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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
4 |
============================== |
============================== |
5 |
o gmredi: fix few bugs and restore parameter values (e.g., Small_Number=1.D-12) |
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6 |
and scheme (e.g., Large_SlopeSqr=1.D+48) of checkpoint47f_post |
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7 |
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untagged |
8 |
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o some bug fixes for #undef REAL4_IS_SLOW |
9 |
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10 |
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checkpoint52 = ecco_c52_e35 |
11 |
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o after testing adjoints of checkpoint51u_post |
12 |
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13 |
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checkpoint51u_post |
14 |
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o this is the post-merge tag of the ecco-branch |
15 |
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(needs another clean checkout and re-testing) |
16 |
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o various natl_box_adjoint configs and results |
17 |
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but no input fields |
18 |
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o obcs adjoint not yet merged! |
19 |
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o adding ECCO global 1x1 and 2x2 degree configs |
20 |
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o updated/extended some store directives for seaice |
21 |
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o pkg/ecco now containes ecco-specific part of cost function |
22 |
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o top level routines the_main_loop, forward_step |
23 |
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supersede those in model/src/ |
24 |
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previous input data.cost now in data.ecco |
25 |
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(new namelist ecco_cost_nml) |
26 |
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o in ctrl/ cleaned some cross-dependencies and updated CPP options |
27 |
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28 |
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checkpoint51t_post |
29 |
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o this is the pre-merge tag of the ecco-branch |
30 |
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31 |
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checkpoint51s_post |
32 |
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o cleanup: removed various obsolete #define-s |
33 |
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o pkg/grdchk |
34 |
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- renamed 'ph-grd 3' to 'grad-res' |
35 |
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- merged from ecco-branch |
36 |
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(remaining bug fixes for obcs gradient checks) |
37 |
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- additional high-precision output for testreport |
38 |
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(grep for 'precision_grdchk_result') |
39 |
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40 |
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checkpoint51r_post |
41 |
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o cleaned up or removed CPP_OPTIONS.h files |
42 |
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o updated results for some of the tests to reflect the new |
43 |
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optfiles (-ieee: -O0 instead of -O3) |
44 |
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45 |
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checkpoint51q_post |
46 |
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o cd_code: |
47 |
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- moved cd_scheme.F -> cd_code_scheme.F |
48 |
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- separate read_checkpoint from cd_code_ini_vars.F |
49 |
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- separated cd_code part from write_checkpoint |
50 |
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- updated AD_SOURCE, generated .flow |
51 |
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- added CD_CODE_VARS.h to the_main_loop |
52 |
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- Moving cd_code specific store dir.s to pkg/cd_code |
53 |
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o ctrl package totally restructured |
54 |
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- pack/unpack now optional and decoupled from |
55 |
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xx_/adxx_ I/O |
56 |
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- ctrl_pack/unpack cleaned |
57 |
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(new routines ctrl_init_ctrlvar.F, pkg/ctrl/ctrl_init_wet.F) |
58 |
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- confined inclusion of AD_CONFIG.h to where necessary. |
59 |
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o genmake2: changed AD dependencies from SRCFILES to AD_FILES |
60 |
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61 |
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checkpoint51p_post |
62 |
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o create initial cd_code package |
63 |
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- WARNING: the initialization of fields within packages |
64 |
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is broken because INI_FIELDS (where READ_CHECKPOINT is |
65 |
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called) is called *before* PACKAGES_INIT_VARIABLES. |
66 |
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This seems to be backwards since |
67 |
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1) its important to initially zero the entire field including |
68 |
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the "halo" region |
69 |
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2) zeroing needs to be done *before* reading pickup info |
70 |
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and the pickup call might or might not happen in any |
71 |
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particular run |
72 |
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- this needs an overhaul for R2 |
73 |
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o cleanup verification/*/code/GMREDI_OPTIONS.h |
74 |
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o cleanup testreport |
75 |
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76 |
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checkpoint51o_post |
77 |
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o bringing AD-related verif's up to date with genmake2 |
78 |
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- carbon/ |
79 |
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- global_ocean.90x40x15/ |
80 |
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- hs.94.1x64x5/ |
81 |
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- (front_relax/ ) |
82 |
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o (more) consistent directory structure for AD-related verif.'s |
83 |
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o cleaning ALLOW_GRADIENT_CHECK -> ALLOW_GRDCHK |
84 |
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o cleaning some ALLOW_TANGENTLINEAR_RUN -> ALLOW_AUTODIFF |
85 |
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o bug fix in find_alpha.F for MDJWF: |
86 |
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- modif. to alpha = 1/D*( dN/dT - rho*dD/Dt) to account for |
87 |
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change rho -> rho-rhoConst |
88 |
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- replace call find_rho to find_rhonum |
89 |
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o initialisation of rFlx extended to full array (required by TAF) |
90 |
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and shifted to thermodynamics |
91 |
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o removed PTRACERS.h in ptracers routine |
92 |
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o added surfacetendencyPtr to S/R parameter list pracers_forcing |
93 |
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o Correcting initialisations for fVerU, fVerV. |
94 |
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o helping TAF to recognize dependency on kUp for |
95 |
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fVerU, fVerV |
96 |
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o Replacing delZ by delR in pkg/ctrl/ |
97 |
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checkpoint51o_pre |
98 |
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99 |
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o undid all of cp51 pending some cleanups and discussion |
100 |
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o added the [#include "AD_CONFIG.h"] statement to all files that need |
101 |
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it for adjoint/tl #defines |
102 |
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o re-worked the build logic in genmake2 to support AD_CONFIG.h |
103 |
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o removed tools/genmake since it no longer works |
104 |
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105 |
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checkpoint51n_post |
106 |
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o modifications to make FREEZE flux visible to pkg/kpp |
107 |
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- moved surfaceTendencyTice from pkg/seaice to main code |
108 |
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- FREEZE & EXTERNAL_FORCING_SURF moved to FORWARD_STEP |
109 |
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- subroutine FREEZE now limits only surface temperature |
110 |
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(this means new output.txt for global_ocean.90x40x15, |
111 |
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global_ocean.cs32x15, and global_with_exf) |
112 |
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o added surface flux output variables to TIMEAVE_STATVARS |
113 |
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114 |
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checkpoint51n_pre |
115 |
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o added "#undef ALLOW_USE_MPI" support to eesupp/src/gather_2d.F |
116 |
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o added [#include "AD_CONFIG.h"] to all files that use the following |
117 |
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defines: |
118 |
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- ALLOW_ADJOINT_RUN |
119 |
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- ALLOW_TANGENTLINEAR_RUN |
120 |
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- ALLOW_ECCO_OPTIMIZATION |
121 |
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122 |
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checkpoint51m_post |
123 |
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o incorporating changes to get TAMC/TAF working in genmake2 |
124 |
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- added new TAMC/TAF targets to the Makefile |
125 |
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- various cleanups related to package handling |
126 |
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- these changes should have no impact on the forward model |
127 |
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128 |
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checkpoint51l_post |
129 |
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o changes to pkg/cal and pkg/exf that allow and speed-up long integrations |
130 |
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- faster algorithm for cal_addtime.F |
131 |
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- higher precision arithmetic, where needed |
132 |
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- pkg/exf *startdate variables changed from calendar date to |
133 |
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model integration time |
134 |
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135 |
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checkpoint51l_pre |
136 |
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o add salt flux to forcing fields (used when salty sea-ice forms or melts) |
137 |
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o enable to apply restoring on S & T only in a latitude band. |
138 |
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o update output (external_forcing_surf modif. change truncation errors) |
139 |
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global_ocean.cs32x15, global_ocean_pressure, lab_sea, natl_box |
140 |
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141 |
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checkpoint51k_post |
142 |
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o change default to: useNHMTerms=.FALSE. |
143 |
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- new output.txt for atmos. exp (NHMTerms were wrong but now turned off): |
144 |
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adjustment.128x64x1, aim.5l_Eq_Ch, aim.5l_LatLon, hs94.128x64x5, hs94.1x64x5 |
145 |
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- new output.txt for idealized oceanic exp (NHMTerms are now turned off): |
146 |
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exp1, ideal_2D_oce |
147 |
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- change data file of oceanic exp (leave the results unchanged for now) |
148 |
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exp2, global_ocean[90x40x15,pressure,with_exf], lab_sea, natl_box |
149 |
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o set gravitySign automatically according to the vertical coordinate used |
150 |
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(and change sign: back to "logical" value: +1 when R increases downward) |
151 |
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o added an include barrier to the default CPP_OPTIONS.h and |
152 |
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removed the #include "PACKAGES_CONFIG.h" from it |
153 |
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o fix a bug in mom_fluxform (from chk51j_post) |
154 |
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155 |
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checkpoint51j_post |
156 |
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o Added some AD-related initialisations in mom_vecinv/ mom_fluxform/ |
157 |
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o adjusted some flow directives (dynamics, thermodynamics) |
158 |
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o added cubed-sphere case to test cost function |
159 |
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o heckpoint_lev?_directives.h now include |
160 |
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pkg-specific directives, whenever those are enabled. |
161 |
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o Moving pkg-specific flow directives to corresponding pkg |
162 |
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Moving pkg-specific differentiation list to corresponding pkg |
163 |
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Moving pkg-specific checkpoint-lev storing to corresponding pkg |
164 |
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---> conventions are |
165 |
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- pkg_ad.flow |
166 |
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- pkg_ad_diff.list |
167 |
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- pkg_ad_check_lev?_dir.h |
168 |
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169 |
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checkpoint51i_post |
170 |
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o merge of the branch-genmake2 |
171 |
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- knowingly breaks the older genmake |
172 |
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- automatic generation of all ALLOW_${PKG_NAME} defines |
173 |
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- new testreport supersedes older testscript |
174 |
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o large number of package inclusion and header cleanups |
175 |
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checkpoint51i_pre |
176 |
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|
177 |
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o new output for adjoin of global ocean vector invariant |
178 |
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o fix for checkpoint of thermodynamic seaice and bulk_force |
179 |
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o Steph gchem various cleanups |
180 |
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181 |
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checkpoint 51h_pre |
182 |
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o fixed some single quotes |
183 |
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o modify gchem pkg to be more versatile |
184 |
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o modifications to clean up dic pkg |
185 |
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o add pkg/cfc |
186 |
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187 |
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checkpoint51g_post |
188 |
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o provide links for ARPACK and ADM*TLM |
189 |
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o start removing verification/vero/ |
190 |
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o update AD-related stuff |
191 |
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(in particular some IF-statements in model/src/ routines) |
192 |
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o adding to verification/global_ocean.90x40x15/ adjoint of |
193 |
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vector invariant setup |
194 |
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|
195 |
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checkpoint51f_post |
196 |
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o update advect_xz/output.txt (left from chekpoint50f_pre, ini_vel modif) |
197 |
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o Mods and bug fixes to pkg/cal, pkg/exf, etc., needed for computation |
198 |
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of tracer Green's fucntions for ocean inversion project. |
199 |
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|
200 |
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checkpoint51f_pre |
201 |
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o Added on-the-fly spatial interpolation capability |
202 |
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"USE_EXF_INTERPOLATION" to pkg/exf. |
203 |
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- This is a temporary Cartesian-grid hack until |
204 |
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the super-duper ESMF coupler becomes available. |
205 |
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- See verification/global_with_exf/README for usage example. |
206 |
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- Removed obsolete EXFwindOnBgrid and SEAICEwindOnCgrid |
207 |
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flags and modified pkg/seaice accordingly. |
208 |
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o Bug fix to pkg/ptracers, pkg/generic_advdiff/gad_calc_rhs.F, |
209 |
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and pkg/kpp/kpp_transport_ptr.F for dealing with tracer |
210 |
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non-local transport term. |
211 |
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212 |
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checkpoint51e_post |
213 |
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o pkg/mom_vecinv: |
214 |
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- changes related to hFac: use S/R from aim.5l_cs/code (coriolis & vort.advec) |
215 |
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- add time-ave diagnostic of vorticity advection. |
216 |
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o add diagnostic (instantaneous) of Shapiro Filter effect for T,S & UV. |
217 |
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o atmospheric geopotential: - include water vapor effect; |
218 |
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- use p^kappa in p* scaling. |
219 |
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o land pkg: read initial state from files. |
220 |
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o AIM : add stratospheric drag in the upper level |
221 |
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222 |
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checkpoint51d_post |
223 |
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o change function ILNBLNK (=> last non-blank char.) to return zero |
224 |
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(instead of the string length) when the string. char is empty |
225 |
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o fix bug in dxV,dyU definition of cubed-sphere grid (ini_curvilinear_grid) |
226 |
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o modif's to restore TAMC compatibility |
227 |
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- avoid "_d" constructs in PARAMETER declarations |
228 |
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- avoid interrupting lines by comment lines |
229 |
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o Use cluster local disks for purely local I/O |
230 |
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vs. globally visible disks needed for ctrl stuff |
231 |
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(merged from ecco-branch) |
232 |
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- new active_file_loc... and mdsio_..._loc routines |
233 |
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- affected packages: autodiff, ctrl, grdchk, mdsio |
234 |
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235 |
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checkpoint51c_post |
236 |
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o introducing integer flag debugLevel |
237 |
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- debLevZero: suppress all output |
238 |
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- debLevA: standard |
239 |
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- debLevB: equivalent to current debugMode=.TRUE. |
240 |
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o introducing pathname variable mdsioLocalDir for mdsio |
241 |
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that can be specified at runtime |
242 |
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(relevant for cluster I/O to local disk) |
243 |
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` |
244 |
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>>>checkpoint51b_post |
245 |
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adjoint of ptracers |
246 |
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o disentangled ALLOW_PTRACERS using new ALLOW_GCHEM |
247 |
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o extended state in checkpoint_lev?, etc. |
248 |
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o alternative ctrl/cost with tr1 or ptracer |
249 |
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o new comlev1_bibj_ptracers |
250 |
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o new ptracers.flow |
251 |
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o made ptracers_forcing same as external_forcing_s |
252 |
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o added verification for adjoint with ptracers |
253 |
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- adm. grdchk fail so far |
254 |
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- tlm. grdchk OK |
255 |
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- checked tapelev/comlev recomputations: OK |
256 |
|
<<<checkpoint51b_pre |
257 |
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258 |
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checkpoint51a_post |
259 |
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o added code for biogeochemistry package |
260 |
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- new pkgs: dic, gchem |
261 |
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- new subroutine in ptracers |
262 |
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o modify code for biogeo packages |
263 |
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- in model/src and pkg/ptracers |
264 |
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|
265 |
|
checkpoint51 |
266 |
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o merged improved packages from ecco-branch (ecco_c51_e34) to MAIN |
267 |
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- autodiff, ctrl, exf, grdchk, seaice |
268 |
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kept separate packages |
269 |
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- cost, ecco, obcs |
270 |
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o updating verification/internal_wave, verification/lab_sea |
271 |
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(all verif's pass on faulks.lcs.mit.edu RH7.3, g77) |
272 |
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|
273 |
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checkpoint50i_post |
274 |
|
o Preparing next differentiable checkpoint and sync |
275 |
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of MAIN vs. ecco-branch |
276 |
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- 1st step: this one is differentiable |
277 |
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- 2nd step: next(! not this) checkpoint will have updated packages |
278 |
|
from ecco-branch) |
279 |
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|
280 |
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checkpoint50h_post |
281 |
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o new package "land": provide surface BC for AIM. |
282 |
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o pkg/ptracers: apply exchange to all tracers after reading a pickup. |
283 |
|
o AIM: use true log-P extrapolation for near surface temp (= as in |
284 |
|
F.Molteni paper) ; update aim.5l_cs output. |
285 |
|
o New variable in PARM03 for more flexible pickups |
286 |
|
o somewhat cleaned package initialisation sequence for |
287 |
|
ctrl/ cost/ ecco/ in packages_... routines |
288 |
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|
289 |
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checkpoint50g_post |
290 |
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o merged with release1_p17 (pkg/seaice and verification/lab_sea) |
291 |
|
- added SEAICE_MULTILEVEL for 8-category sea-ice thermodynamics |
292 |
|
- LSR sea-ice dynamic solver moved to SouthWest B-grid location and |
293 |
|
made the default because of faster convergence than ADI |
294 |
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|
295 |
|
checkpoint50f_post |
296 |
|
o exf totally restructured |
297 |
|
- replaced all exf_set_ routines by one generic exf_set_gen.F |
298 |
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and made sure it's still differentiable |
299 |
|
- split exf_getffields.F into new exf_bulkformulae.F |
300 |
|
- exf_inscal_/exf_outscal_ suffixes consistent with field names |
301 |
|
- updated adjoint/makefile and relevant verif. accordingly |
302 |
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|
303 |
|
checkpoint50f_pre |
304 |
|
o AIM: near surface temp evaluated from Pot.Temp: fixed for Part Cell ; |
305 |
|
+ change Evap over land. (update aim.5l_cs output) |
306 |
|
o added missing .cvsignores and made uniform across expts |
307 |
|
o changed configuration of tidal_basin_2d expt |
308 |
|
o added pkg/debug functions for tracing code in fatal crashes |
309 |
|
o tidied pkg/monitor to use MONITOR_OPTIONS.h |
310 |
|
o new fn in pkg/monitor to stop model if solution grows too big |
311 |
|
o removed lots of single quotes from comments |
312 |
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|
313 |
|
checkpoint50e_post |
314 |
|
o make KPP work with PTRACERS |
315 |
|
- fix gad_calc_rhs to call new routine kpp_transport_ptr, which is |
316 |
|
nearly a copy of kpp_transport_s |
317 |
|
- there is no analogue to SurfaceTendencyS, so I have to use |
318 |
|
gPtr(of the surface layer) instead |
319 |
|
o add a new platform SunFire+mpi (SunFire 15000) to genmake |
320 |
|
checkpoint50e_pre |
321 |
|
|
322 |
|
checkpoint50d_post |
323 |
|
o change kpp output from multiple-record state files to single-record state |
324 |
|
files analogous to write_state.F |
325 |
|
o reduce the output frequency of cg3d-related stuff to the monitor frequency, |
326 |
|
analogous to the cg2d-related output. |
327 |
|
o fix small problem with in ptracers_write_checkpoint.F: len(suff)=512, |
328 |
|
so that writing to internal file fn (with length 512) fails. |
329 |
|
checkpoint50d_pre |
330 |
|
|
331 |
|
checkpoint50c_post |
332 |
|
o fix problem in ini_procs.F when using MPI (was there since checkpoint48f) |
333 |
|
o add monitor diagnostic of vorticity (mon_vort3.F) and potential energy. |
334 |
|
o add time-average diagnostic of U*V and vertical diffusive flux for theta. |
335 |
|
o bug fixed in convective adjustment diagnostic (multi-tile set-up). |
336 |
|
o 4th Order Adv scheme: return to previous (c40pre7) masking near boundaries. |
337 |
|
|
338 |
|
checkpoint50c_pre |
339 |
|
Merging from release1_p13: |
340 |
|
o bug fix for pkg/seaice dynamic solver |
341 |
|
o Added SEAICE_initialHEFF to pkg/seaice |
342 |
|
|
343 |
|
checkpoint50b_post |
344 |
|
o store u*,v* in gU,V instead of in guNm1,gvNm1 |
345 |
|
o in order to put the momForcing out of the Adams-Bashforth: |
346 |
|
move forcing & CD-scheme calls from mom_fluxform & mom_vecinv |
347 |
|
to timestep.F |
348 |
|
o new flag "useCDscheme" (default=F); replace guCD,gvCD by local arrays |
349 |
|
o re-generate output for highly sensitive test-exp: |
350 |
|
global_ocean_pressure, ideal_2D_oce, lab_sea, natl_box |
351 |
|
|
352 |
|
checkpoint50b_pre |
353 |
|
o restore the use of momAdvection & useCoriolis flags (mom_vecinv) |
354 |
|
o corrected CPP option mismatch in exf_Bulk... functions for case |
355 |
|
#define ALLOW_ATM_WIND && #undef ALLOW_ATM_TEMP |
356 |
|
|
357 |
|
checkpoint50a_post |
358 |
|
o Bug fix for merging between c50 and KPP. |
359 |
|
ikey was passed from thermodynamics to kpp_calc via |
360 |
|
common block rather than being recomputed in kpp_calc, |
361 |
|
in contradiction with new key itdkey. |
362 |
|
New key ikppkey created, and tamc.h headers updated. |
363 |
|
|
364 |
|
checkpoint50 |
365 |
|
- 2nd step of merge with ecco-branch: |
366 |
|
merge changes in ecco-branch back into main trunk |
367 |
|
- bug fix in find_alpha |
368 |
|
- more storing in gmredi_calc_tensor.F, kpp_routines.F |
369 |
|
- avoid iterative loop in ini_pressure for ALLOW_AUTODIFF_TAMC |
370 |
|
- merged some sliced AD support routines |
371 |
|
|
372 |
|
checkpoint49 |
373 |
|
merged from ecco-branch: |
374 |
|
o exf: |
375 |
|
- Enable initialisation of forcing fields to constant |
376 |
|
(runtime) values. |
377 |
|
- in exf_getffields.F |
378 |
|
Reduce i-/j-loop to interior domain, discarding overlaps. |
379 |
|
That also fixes wrong TAF-key computations for key_1, key_2 |
380 |
|
with bulf formulae. |
381 |
|
- exf_init.F modify #ifdef for exf_init_evap |
382 |
|
- exf_getffieldrec.F, ctrl_getrec.F |
383 |
|
The following INT-usages are not safe: |
384 |
|
fldsecs = int(fldsecs/fldperiod)*fldperiod |
385 |
|
fldcount = int(fldsecs/fldperiod) + 1 |
386 |
|
and were modified. |
387 |
|
o autodiff: checkpoint_lev... |
388 |
|
- updated storing for bulk formulae (some arrays were missing) |
389 |
|
- added state for seaice package |
390 |
|
- synchronized with main branch |
391 |
|
o DIVA: |
392 |
|
Modif.s in |
393 |
|
- the_main_loop.F |
394 |
|
- the_model_main.F |
395 |
|
and added cost_final_restore.F cost_final_store.F |
396 |
|
o With these changes, it is possible to fully separate |
397 |
|
the first forward run to compute the cost function (mdthe_main_loop) |
398 |
|
and adjoint runs over individual DIVA intervals (adthe_main_loop) |
399 |
|
into separate model executions. |
400 |
|
This enables better tuning of DIVA to given queue sizes. |
401 |
|
o Loss of cost function value in consecutive DIVA runs is |
402 |
|
fixed by storing to 'costfinal' file. |
403 |
|
o Appropriate call of ctrl_unpack/_pack,grdchk_main at |
404 |
|
beginning/end of adjoint integration is accounted for. |
405 |
|
The current changes apply to TAF-1.4.26. |
406 |
|
TAF has one remaining bug, requiring one manual change |
407 |
|
(see MITgcm manual). |
408 |
|
o cal: synchronized between MAIN and ecco-branch |
409 |
|
|
410 |
|
checkpoint48i_post |
411 |
|
o Changes to restore differentiability of code w.r.t. previous tag |
412 |
|
(mostly adding new routines to make list and replacing |
413 |
|
pressure by totPhiHyd). |
414 |
|
o Updated and merged grdchk package |
415 |
|
- has both ADM and TLM checks |
416 |
|
- works for single- and multi-proc. |
417 |
|
- output cleaned |
418 |
|
- worked successfully for parallel DIVA |
419 |
|
o genmake: |
420 |
|
- Adding -platform=SP4 |
421 |
|
- Modif. for DEC Alpha (many don't have makedepend; use mkdep instead). |
422 |
|
o Modif. for DIVA: |
423 |
|
ctrl_unpack should not be called in intermediate DIVA interval. |
424 |
|
(similar thing would apply for active files such as |
425 |
|
tbar, sbar, psbar, which should not be reinitialised; |
426 |
|
only relevant for ecco-branch) |
427 |
|
|
428 |
|
checkpoint48h_post |
429 |
|
o improve "ini_p_ground" when using finite difference form for calc_phi_hyd |
430 |
|
o Added net flux to downward flux conversion to pkg/exf/exf_getffields.F |
431 |
|
o Added SEAICE_initialHEFF to pkg/seaice |
432 |
|
o ecco_the_model_main.F: SEAICE_WRITE_PICKUP must precede WRITE_CHECKPOINT |
433 |
|
|
434 |
|
checkpoint48g_post |
435 |
|
--- EOS: |
436 |
|
o compute locally the pressure for use in EOS: UNESCO, JMD95P, MDJWF |
437 |
|
store total Potential in totPhyHyd for diagnostics & EOS. |
438 |
|
o fix restart and overlap Pb when using Z-coord and EOS funct. of P |
439 |
|
--- Pressure/geopotential gradient: |
440 |
|
o use Ro_surf & R_low instead of hFac in cal_phi_hyd: |
441 |
|
o NLFS + p-coord.: eta*Alpha' is not longer lagging 1.time-step behind |
442 |
|
( changes results of global_ocean_pressure ) |
443 |
|
o NLFS + z-coord.: add eta*Rho' contribution. |
444 |
|
o accurate phiHyd when using interface-W at the middle between 2 centers |
445 |
|
( changes results of ideal_2D_oce ) |
446 |
|
o includes r* 2nd term in potential gradient. |
447 |
|
|
448 |
|
checkpoint48f_post |
449 |
|
Merging from release1_p12: |
450 |
|
o Modifications for using pkg/exf with pkg/seaice |
451 |
|
- improved description of the various forcing configurations |
452 |
|
- added basic radiation bulk formulae to pkg/exf |
453 |
|
- units/sign fix for evap computation in exf_getffields.F |
454 |
|
- updated verification/global_with_exf/results/output.txt |
455 |
|
o Added pkg/sbo for computing IERS Special Bureau for the Oceans |
456 |
|
(SBO) core products, including oceanic mass, center-of-mass, |
457 |
|
angular, and bottom pressure (see pkg/sbo/README.sbo). |
458 |
|
o Lower bound for viscosity/diffusivity in pkg/kpp/kpp_routines.F |
459 |
|
to avoid negative values in shallow regions. |
460 |
|
- updated verification/natl_box/results/output.txt |
461 |
|
- updated verification/lab_sea/results/output.txt |
462 |
|
o MPI gather, scatter: eesupp/src/gather_2d.F and scatter_2d.F |
463 |
|
o Added useSingleCpuIO option (see PARAMS.h). |
464 |
|
o Updated useSingleCpuIO option in mdsio_writefield.F to |
465 |
|
work with multi-field files, e.g., for single-file pickup. |
466 |
|
o pkg/seaice: |
467 |
|
- bug fix in growth.F: QNET for no shortwave case |
468 |
|
- added HeffFile for specifying initial sea-ice thickness |
469 |
|
- changed SEAICE_EXTERNAL_FLUXES wind stress implementation |
470 |
|
o Added missing /* */ to CPP comments in pkg/seaice, pkg/exf, |
471 |
|
kpp_transport_t.F, forward_step.F, and the_main_loop.F |
472 |
|
o pkg/seaice: |
473 |
|
- adjoint-friendly modifications |
474 |
|
- added a SEAICE_WRITE_PICKUP at end of the_model_main.F |
475 |
|
|
476 |
|
checkpoint48e_post |
477 |
|
o New S/R for diagnostic of bottom pressure (phi0surf was missing in c48d_post) |
478 |
|
o dynamics: change definition of computational domain & adapt mom_fluxform |
479 |
|
accordingly ; when viscA4=0, allows to run the dynamics with Olx=Oly=2. |
480 |
|
o following exp works with Olx=Oly=2 (and pass through checkbounds option): |
481 |
|
adjust_nlfs.cs-32x32x1 adjustment.128x64x1 adjustment.cs-32x32x1 |
482 |
|
exp0 exp1 exp2 exp4 exp5 hs94.cs-32x32x5 hs94.128x64x5 hs94.1x64x5 |
483 |
|
global_ocean.90x40x15 global_with_exf global_ocean_pressure |
484 |
|
inverted_barometer solid-body.cs-32x32x1 |
485 |
|
(high order AdvScheme and/or multiDimAd works with Olx=Oly=2 ? not sure) |
486 |
|
|
487 |
|
checkpoint48d_post |
488 |
|
o in preparation for r*: |
489 |
|
a) use pre-computed gradient of hydrostatic potential: |
490 |
|
changes in timestep.F & mom_cdscheme.F affects results of ideal_2D_oce |
491 |
|
b) move phi0surf from calc_phi_hyd to calc_grad_phi_hyd: |
492 |
|
=> affects results of glob_oce_pressure (different truncation error) |
493 |
|
update output.txt of ideal_2D_oce & global_ocean_pressure |
494 |
|
|
495 |
|
checkpoint48d_pre |
496 |
|
o in preparation for r*: |
497 |
|
new S/R (calc_grad_phi_hyd.F) to compute Hydrostatic potential gradient. |
498 |
|
pass the 2 comp. of the grad. as arguments to momentum S/R. |
499 |
|
but for the moment, only used if it does not change the results. |
500 |
|
o add finite volume form of calc_phi_hyd for buoyancyRelation OCEANIC & OCEANICP |
501 |
|
|
502 |
|
checkpoint48c_post |
503 |
|
Modifications in treatment of initial flux forcing controls |
504 |
|
to avoid extra storing of flux fields. |
505 |
|
|
506 |
|
checkpoint48c_pre |
507 |
|
o Added tidal_basin_2d experiment (currently 1D!) |
508 |
|
o can use r* Coordinate with OBC (but Orlanski Rad. BC not yet implemented) |
509 |
|
|
510 |
|
checkpoint48b_post |
511 |
|
o r* coordinate added in #ifdef NONLIN_FRSURF block. |
512 |
|
(modification to pressure gradient not yet implemented) |
513 |
|
o mom_fluxform: new S/R mom_calc_rtrans.F computes vertical transports |
514 |
|
(for U & V) that are used for vertical advection of momentum. |
515 |
|
|
516 |
|
checkpoint48a_post |
517 |
|
o In preparation for r*, use temp. array to compute vertical transport |
518 |
|
in flux-form momentum pkg. => change results of few test-exp. |
519 |
|
Update output of: exp4, exp5, front_relax, global_ocean_pressure, |
520 |
|
lab_sea, natl_box & plume_on_slope |
521 |
|
|
522 |
checkpoint48 |
checkpoint48 |
523 |
|
o fix small bug that was causing lot of warning (TIMER_STOP 'UPDATE_CG2D') |
524 |
|
|
525 |
|
checkpoint47j_post |
526 |
|
o add new exp. (ideal_2D_oce) to test "exotic" parameters and options. |
527 |
|
o moved adexch from forward_step to addummy_in_stepping |
528 |
|
o added exch in ctrl_map_... |
529 |
|
o aveFreq.=0. at end of cost_final to avoid overwrite in |
530 |
|
reverse checkpointing loop |
531 |
|
o Yet more changes in gmredi: |
532 |
|
* adgmredi_calc_tensor |
533 |
|
avoiding all recomputation of gmredi_slope_limit |
534 |
|
* adgmredi_x/y/rtransport |
535 |
|
added flag for excessive storing to avoid recomp. of |
536 |
|
u/v/rtans, dTdx/y/z |
537 |
|
-> this is not really necessary and very memory-consuming |
538 |
|
* adgmredi_slope_psi: |
539 |
|
consistency with gmredi_slope_limit in treatment of GM_slopeSqCutoff |
540 |
|
* gmredi_slope_limit |
541 |
|
re-activated full calculation of taperfct for case 'ac02' |
542 |
|
o updating verification/ adjoints of carbon, global_ocean.90x40x15 |
543 |
|
|
544 |
|
checkpoint47i_post |
545 |
|
o GM_EXCLUDE_() replace GM_TAPER_(): by default, all the code is compiled. |
546 |
|
o add GM_Small_Number & GM_slopeSqCutoff as run-time parameters (data.gmredi) |
547 |
|
default values = 1.D-12 & 1.D+48 (=> give same results as checkpoint47f_post) |
548 |
|
o cg2dTargetResWunit: define tolerance using deltaTmom (and not deltaTfreesurf) |
549 |
|
o gmredi: fix few bugs. |
550 |
|
|
551 |
|
checkpoint47h_post (duplicate tag for PH's c48 tag, in order to move c48) |
552 |
This will be a good checkpoint to plug into the ecco-branch. |
This will be a good checkpoint to plug into the ecco-branch. |
553 |
o few modif.'s to get latest version adjointed |
o few modif.'s to get latest version adjointed |
554 |
(mainly kick out code in ini_linear_phisurf) |
(mainly kick out code in ini_linear_phisurf) |