3 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
4 |
============================== |
============================== |
5 |
|
|
6 |
|
checkpoint48a_post |
7 |
|
o In preparation for r*, use temp. array to compute vertical transport |
8 |
|
in flux-form momentum pkg. => change results of few test-exp. |
9 |
|
Update output of: exp4, exp5, front_relax, global_ocean_pressure, |
10 |
|
lab_sea, natl_box & plume_on_slope |
11 |
|
|
12 |
|
checkpoint48 |
13 |
|
o fix small bug that was causing lot of warning (TIMER_STOP 'UPDATE_CG2D') |
14 |
|
|
15 |
|
checkpoint47j_post |
16 |
|
o add new exp. (ideal_2D_oce) to test "exotic" parameters and options. |
17 |
|
o moved adexch from forward_step to addummy_in_stepping |
18 |
|
o added exch in ctrl_map_... |
19 |
|
o aveFreq.=0. at end of cost_final to avoid overwrite in |
20 |
|
reverse checkpointing loop |
21 |
|
o Yet more changes in gmredi: |
22 |
|
* adgmredi_calc_tensor |
23 |
|
avoiding all recomputation of gmredi_slope_limit |
24 |
|
* adgmredi_x/y/rtransport |
25 |
|
added flag for excessive storing to avoid recomp. of |
26 |
|
u/v/rtans, dTdx/y/z |
27 |
|
-> this is not really necessary and very memory-consuming |
28 |
|
* adgmredi_slope_psi: |
29 |
|
consistency with gmredi_slope_limit in treatment of GM_slopeSqCutoff |
30 |
|
* gmredi_slope_limit |
31 |
|
re-activated full calculation of taperfct for case 'ac02' |
32 |
|
o updating verification/ adjoints of carbon, global_ocean.90x40x15 |
33 |
|
|
34 |
|
checkpoint47i_post |
35 |
|
o GM_EXCLUDE_() replace GM_TAPER_(): by default, all the code is compiled. |
36 |
|
o add GM_Small_Number & GM_slopeSqCutoff as run-time parameters (data.gmredi) |
37 |
|
default values = 1.D-12 & 1.D+48 (=> give same results as checkpoint47f_post) |
38 |
|
o cg2dTargetResWunit: define tolerance using deltaTmom (and not deltaTfreesurf) |
39 |
|
o gmredi: fix few bugs. |
40 |
|
|
41 |
|
checkpoint47h_post (duplicate tag for PH's c48 tag, in order to move c48) |
42 |
|
This will be a good checkpoint to plug into the ecco-branch. |
43 |
|
o few modif.'s to get latest version adjointed |
44 |
|
(mainly kick out code in ini_linear_phisurf) |
45 |
|
o modif's to run adjoint with exactConserv |
46 |
|
o case GM_BOLUS_ADVEC should be cleaned |
47 |
|
S/R gmredi_slope_psi should be cleaned |
48 |
|
o verification/carbon now has exactConserv=.TRUE. |
49 |
|
|
50 |
|
checkpoint47g_post |
51 |
|
o time-average AIM output: becomes independent from statvars time-average |
52 |
|
(can be used with #undef ALLOW_TIMEAVE) ; add new variables (e.g., RH) |
53 |
|
o After TAF bug fix: |
54 |
|
Tested adjoint of gmredi package. |
55 |
|
Tests were done with checkpoint47 rather than with latest |
56 |
|
checkpoint47f_post since the latter is broken for the adjoint |
57 |
|
verification/carbon/ contains both ADM and TLM gradient checks. |
58 |
|
Here they are, before they get changed/lost/stolen. |
59 |
|
Mostly modif.'s to fix numerical sensitivities. |
60 |
|
Gradient checks OK for |
61 |
|
- GM_taper_scheme: |
62 |
|
* clipping |
63 |
|
* ac02 |
64 |
|
* linear |
65 |
|
* glw91 |
66 |
|
* dm95 |
67 |
|
* ldd97 |
68 |
|
- GMREDI_OPTIONS: |
69 |
|
* GM_VISBECK_VARIABLE_K |
70 |
|
* GM_NON_UNITY_DIAGONAL |
71 |
|
* GM_EXTRA_DIAGONAL |
72 |
|
* GM_BOLUS_ADVEC |
73 |
|
in conjunction with data.gmredi parameters to be checked in |
74 |
|
in a few minutes under verification/carbon/code/ |
75 |
|
|
76 |
|
checkpoint47f_post |
77 |
|
Merging from release1_p10: |
78 |
|
o modifications for using pkg/exf with pkg/seaice |
79 |
|
- pkg/seaice CPP options SEAICE_EXTERNAL_FORCING |
80 |
|
and SEAICE_EXTERNAL_FLUXES |
81 |
|
- pkg/exf CPP options EXF_READ_EVAP and |
82 |
|
EXF_NO_BULK_COMPUTATIONS |
83 |
|
- usage examples are Experiments 8 and 9 in |
84 |
|
verification/lab_sea/README |
85 |
|
- verification/lab_sea default experiment now uses |
86 |
|
pkg/gmredi, pkg/kpp, pkg/seaice, and pkg/exf |
87 |
|
|
88 |
|
checkpoint47e_post |
89 |
|
o created a tag prior to creating a branch |
90 |
|
|
91 |
|
checkpoint47d_post |
92 |
|
o fixed bug in the oceanic pressure coordinates code: vertical viscosity |
93 |
|
at the bottom boundary had an erroneous half slip boundary condition |
94 |
|
o added bottom drag and no slip boundary condition capabilities to |
95 |
|
oceanic pressure coordinates code |
96 |
|
o added new verification experiment global_ocean_pressure, this experiment is |
97 |
|
also described in the tutorial section of the manual |
98 |
|
checkpoint47d_pre |
99 |
|
|
100 |
|
checkpoint47c_post |
101 |
|
o Added a verification experiment for a global cubed-sphere ocean run |
102 |
|
- verification/global_ocean.cubed32x32x30 |
103 |
|
- uses pkg/therm_seaice and pkg/bulk_forcing |
104 |
|
|
105 |
|
o allow to run AIM physics with SPEEDY input files (from Franco Molteni) |
106 |
|
o allow a more accurate definition of Ro_Surf (selectFindRoSurf=1) |
107 |
|
when using P-coordinate; only implemented for atmospheric config. |
108 |
|
o OCEANICP & realFreshWater: include P-E direct effect on wVel ; |
109 |
|
NOTES: requires option NONLIN_FRSURF to be "#define". |
110 |
|
o update advect_xz/results/output.txt (left from checkpoint44g_post) |
111 |
|
|
112 |
|
checkpoint47b_post |
113 |
|
Merging from release1_p9: |
114 |
|
o pkg/seaice |
115 |
|
- removed GOTO's and added taf directives |
116 |
|
- double precision constants to reduce the g77 (Linux) |
117 |
|
to F77 (SGI) differences reported in release1_p8 |
118 |
|
o tools/genmake |
119 |
|
- added SGI options |
120 |
|
o verification/testscript |
121 |
|
- updated to that of checkpoint47a_post |
122 |
|
o verification/global_ocean.90x40x15/input/eedata |
123 |
|
- modified for SGI f77 compatibility |
124 |
|
o verification/lab_sea |
125 |
|
- added description of sea-ice model |
126 |
|
- added missing matlab routines |
127 |
|
- added test of thermodynamics parallelization |
128 |
|
|
129 |
|
checkpoint47a_post |
130 |
|
o new pkg: aim_v23 |
131 |
|
= F. Molteni atmos.physics (SPEEDY, ver23) adapted to MITgcm. |
132 |
|
for now, keep the same surface forcing as before. |
133 |
|
- Part-Cell implemented into AIM; check that Heat & Water are conserved |
134 |
|
- aim.5l_cs: use new aim pkg (run 10yr & get better results than before) |
135 |
|
- aim.5l_LatLon & aim.5l_Equatorial_Channel are still using old aim pkg |
136 |
|
o add diagnostic of surface correction term in monitor output |
137 |
|
|
138 |
|
o bulk_force and therm_seaice |
139 |
|
- Two packages: bulk_force (Bulk forcing) |
140 |
|
and therm_seaice (thermodynamic_seaice) - adopted from LANL CICE.v2.0.2 |
141 |
|
- Earlier integration from Stephaine Dutkiewicz |
142 |
|
and Patrick Heimbach. |
143 |
|
- Two ifdef statements for compile time, |
144 |
|
ALLOW_THERM_SEAICE and ALLOW_BULK_FORCE |
145 |
|
|
146 |
|
checkpoint47 |
147 |
|
differentiable version of checkpoint46n_post |
148 |
|
o bug fix in quasihydrostaticterms |
149 |
|
o * "clean" adjoint code (in terms of extensive recomputations) |
150 |
|
can now be obtained for all GMREDI options (i.e. for |
151 |
|
- GM_VISBECK_VARIABLE_K |
152 |
|
- GM_NON_UNITY_DIAGONAL |
153 |
|
- GM_EXTRA_DIAGONAL |
154 |
|
- GM_BOLUS_ADVEC ) |
155 |
|
* However, wrong gradient check problem remains unsolved. |
156 |
|
* New CPP options have been introduced for different |
157 |
|
tapering schemes |
158 |
|
o external_fields_load now part of differentiation list |
159 |
|
o pressure needs multiple storing; |
160 |
|
would be nice to have store_pressure at beginning or |
161 |
|
end of forward_step, e.g. by having phiHyd global (5-dim.) |
162 |
|
(NB: pressure is needed for certain cases in find_rho, |
163 |
|
which is also invoked through convective_adjustment). |
164 |
|
o recomputations in find_rho for cases |
165 |
|
'JMD95'/'UNESCO' or 'MDJWF' are OK. |
166 |
|
o #define ATMOSPHERIC_LOADING should be differentiable |
167 |
|
o ini_forcing shifted to begining of initialise_varia |
168 |
|
o Incorporating QNVS line search routines into MITgcm |
169 |
|
(this is separate code, and therefore not under pkg) |
170 |
|
lsopt/, optim/ |
171 |
|
o Updated verification/carbon/ |
172 |
|
- #define GM_VISBECK_VARIABLE_K |
173 |
|
- GM_taper_scheme = 'ldd97' |
174 |
|
|
175 |
|
checkpoint46n_post |
176 |
|
Merging from release1_p8: |
177 |
|
o verification/natl_box: |
178 |
|
updating new external_fields_load routine |
179 |
|
o New package: pkg/seaice |
180 |
|
Sea ice model by D. Menemenlis (JPL) and Jinlun Zhang (Seattle). |
181 |
|
The sea-ice code is based on Hibler (1979-1980). |
182 |
|
Two sea-ice dynamic solvers, ADI and LSR, are included. |
183 |
|
In addition to computing prognostic sea-ice variables and diagnosing |
184 |
|
the forcing/external data fields that drive the ocean model, |
185 |
|
SEAICE_MODEL also sets theta to the freezing point under sea-ice. |
186 |
|
The implied surface heat flux is then stored in variable |
187 |
|
surfaceTendencyTice, which is needed by KPP package (kpp_calc.F and |
188 |
|
kpp_transport_t.F) to diagnose surface buoyancy fluxes and for the |
189 |
|
non-local transport term. Because this call precedes model |
190 |
|
thermodynamics, temperature under sea-ice may not be "exactly" at |
191 |
|
the freezing point by the time theta is dumped or time-averaged. |
192 |
|
N.B.: fairly large differences in accuracy occur across |
193 |
|
different platforms/compilers; comparison between |
194 |
|
g77 (Linux) and F77 (SGI Origin 2000/MIPSpro) |
195 |
|
generated output gives: |
196 |
|
T S U V |
197 |
|
C D M c m s m s m s m s |
198 |
|
n p a R g m m e . m m e . m m e . m m e . |
199 |
|
f n k u 2 i a a d i a a d i a a d i a a d |
200 |
|
g d e n d n x n . n x n . n x n . n x n . |
201 |
|
|
202 |
|
Y Y Y Y 5 5 7 7 7 8 10 9 6 6 6 6 7 5 7 5 7 FAIL lab_sea |
203 |
|
o GAD: |
204 |
|
- generated new common blocks to account for call of |
205 |
|
same gad routines with differing traceridentities |
206 |
|
(needed to modify tracerIdentity indices in GAD.h) |
207 |
|
- generated separate common blocks for case useCubedSphereExchange |
208 |
|
(Department of Futurology) |
209 |
|
- parameter lists to gmredi_?transport: added tracerIdentity |
210 |
|
- added new key indices to tamc.h |
211 |
|
o external_fields_load: |
212 |
|
- added this routine to TAF list |
213 |
|
- needed to make some common blocks global and additional storing |
214 |
|
along the same lines as exf package (checkpoint_lev?_directives.h) |
215 |
|
o exf: |
216 |
|
updated external forcing package |
217 |
|
- bug fixes carried over from ecco-branch |
218 |
|
(missing OBCS_OPTIONS.h in two routines) |
219 |
|
- enable easy to use "no forcing". |
220 |
|
- added exf I/O for atmospheric loading |
221 |
|
- added exf I/O for runoff data |
222 |
|
- transfered scaling between exf <-> MITgcm to exf namelist |
223 |
|
o Adding new verification experiment global_with_exf. |
224 |
|
This verification experiment is almost identical to the |
225 |
|
global_ocean.90x40x15 experiment, except that it uses |
226 |
|
the exf (and cal) package instead of the |
227 |
|
external_fields_load routine (cf README file). |
228 |
|
|
229 |
|
checkpoint46m_post |
230 |
|
o modified testscript to return -- when there are no lines of "%MON" output |
231 |
|
o added new flag "quasiHydrostatic" for QH mode |
232 |
|
and new routine quasihydrostaticterms() |
233 |
|
o added 2*Omega*Cos(phi)*W to u equations (non-hydrostatic Coriolis term) |
234 |
|
New routine: mom_u_coriolis_nh() |
235 |
|
o fixed sign of non-hydrostatic metric terms in u and v equations. |
236 |
|
Depend on correct sign of gravitySign. |
237 |
|
o added work.pc* to .cvsignore in aim directories using ifc |
238 |
|
o introduced flag for controllin non-hydrostatic metric terms |
239 |
|
o removed gravitySign from PARM04 |
240 |
|
o switched to g77/ifc from pgf77 in aim experiments |
241 |
|
|
242 |
|
checkpoint46l_post |
243 |
|
o made convective adjustment work with pressure coordinates: |
244 |
|
- changed the direction of k-loop in convective_adjustment.F for the |
245 |
|
case of pressure coordinates (OCEANICP,ATMOSPHERIC buoyancyRelation) |
246 |
|
- adjusted the reference pressure k-index in convective_adjustment.F |
247 |
|
- adjusted the convection condition in convect.F (in analogy to |
248 |
|
calc_ivdc.F) |
249 |
|
- convective_adjustment no longer computes anything on the halos |
250 |
|
- removed the warnings about negative salinity from find_rho.F and |
251 |
|
find_alpha.F; instead the new routine look_for_neg_salinity, called |
252 |
|
at the beginning of find_rho, find_alpha, and find_beta, does a |
253 |
|
check of the entire slice, if CPP-option |
254 |
|
CHECK_SALINITY_FOR_NEGATIVE_VALUES is defined |
255 |
|
checkpoint46l_pre |
256 |
|
|
257 |
|
checkpoint46k_post |
258 |
|
o fixed the verification/global_ocean.90x40x15 experiment: |
259 |
|
- new bathymetry (the world according to A., JMC, and M.) |
260 |
|
- new initial fields and forcing fields (*.bin files) |
261 |
|
- new POLY3.COEFFS (for the next release one should switch to a full |
262 |
|
equation of state: JMD95P or MDJWF) |
263 |
|
- fixed several errors and redundancies in the data file |
264 |
|
- experiment uses looped cells |
265 |
|
- added matlab directory with diagnostic scripts for plotting of output |
266 |
|
|
267 |
|
o S/R aim_initialise.F replace S/R aim_init from file aim_do_inphys.F: |
268 |
|
- read AIM physics parameters from a file (data.aimphys) |
269 |
|
- set defaults values = F.Molteni paper (Clim.Dyn., 2002) |
270 |
|
|
271 |
|
checkpoint46j_post |
272 |
|
o split calc_exact_eta in 2 S/R : integr_continuity & update_etaH |
273 |
|
o move wVel computation at the end of the time step, in S/R integr_continuity |
274 |
|
o create specific S/R to exchange T,S before DYNAMICS (for stagger time step) |
275 |
|
o update timeave pkg for wVel diagnostic. |
276 |
|
checkpoint46j_pre |
277 |
|
|
278 |
|
checkpoint46i_post |
279 |
|
o Clean up AIM package (and keep the results unchanged): |
280 |
|
include CPP_OPTION and use IMPLICT NONE in all routines ; |
281 |
|
declare all the variables _RL ; use _d 0 for all numerical constants. |
282 |
|
use ifdef ALLOW_AIM everywhere. And now AIM can be used with g77 ! |
283 |
|
|
284 |
|
checkpoint46h_post |
285 |
|
o cleaned up the use of rhoNil and rhoConst. |
286 |
|
- rhoNil should only appear in the LINEAR equation of state, everywhere |
287 |
|
else rhoNil is replaced by rhoConst, e.g. find_rho computes rho-rhoConst |
288 |
|
and the dynamical equations are all divided by rhoConst |
289 |
|
o introduced new parameter rhoConstFresh, a reference density of fresh |
290 |
|
water, to remove the fresh water flux's dependence on rhoNil. The default |
291 |
|
value is 999.8 kg/m^3 |
292 |
|
o cleanup up external_forcing.F and external_forcing_surf.F |
293 |
|
- can now be used by both OCEANIC and OCEANICP |
294 |
|
checkpoint46h_pre |
295 |
|
|
296 |
|
Added code to convert surface volume flux (fresh water) into |
297 |
|
a mass flux when using P coordinates in the ocean (OCEANICP). |
298 |
|
Note: It assumes you have set rho0=rhoConst=density of fresh water. |
299 |
|
|
300 |
|
checkpoint46g_post |
301 |
|
o Include a new diagnostic variable phiHydLow for the ocean model |
302 |
|
- in z-coordinates, it is the bottom pressure anomaly |
303 |
|
- in p-coordinates, it is the sea surface elevation |
304 |
|
- in both cases, these variable have global drift, reflecting the mass |
305 |
|
drift in z-coordinates and the volume drift in p-coordinates |
306 |
|
- included time averaging for phiHydLow, be aware of the drift! |
307 |
|
o depth-dependent computation of Bo_surf for pressure coordinates |
308 |
|
in the ocean (buoyancyRelation='OCEANICP') |
309 |
|
- requires a new routine (FIND_RHO_SCALAR) to compute density with only |
310 |
|
Theta, Salinity, and Pressure in the parameter list. This routine is |
311 |
|
presently contained in find_rho.F. This routine does not give the |
312 |
|
correct density for 'POLY3', which would be a z-dependent reference |
313 |
|
density. |
314 |
|
o cleaned up find_rho |
315 |
|
- removed obsolete 'eqn' from the parameter list. |
316 |
|
o added two new verification experiments: gop and goz |
317 |
|
(4x4 degree global ocean, 15 layers in pressure and height coordinates) |
318 |
|
checkpoint46g_pre |
319 |
|
|
320 |
|
checkpoint46f_post |
321 |
|
o Enable tangent linear (forward mode) gradient checks: |
322 |
|
- extended active file handling to g_... files |
323 |
|
- added TANGENT_SIMULATION to theSimulationMode |
324 |
|
- extended grdchk package accordingly |
325 |
|
o added tangent linear setup in verification/carbon/code_ftl |
326 |
|
o added adjoint setup in verification/front_relax/code_ad |
327 |
|
|
328 |
|
checkpoint46e_post |
329 |
|
o Added new equation of state -> MDJWF |
330 |
|
- EOS of McDougall et al., 2002, JAOT, submitted |
331 |
|
- caveat: the equation of state is only valid for a smaller (more |
332 |
|
realistic?) range of values than JMD95P/Z and UNESCO |
333 |
|
- added masks to the calculation of pressure in store_pressure |
334 |
|
- added more check values for density in check_eos (ini_eos.F), some of |
335 |
|
the old check values are out of the range of the MDJWF-eos, so don't |
336 |
|
expect perfect matches for those |
337 |
|
checkpoint46e_pre |
338 |
|
|
339 |
|
checkpoint46d_post |
340 |
|
o fixed store_pressure to work with both buoyancy relation = 'OCEANIC' and |
341 |
|
'OCEANICP', also initialised field pressure correctly in ini_eos in the |
342 |
|
case of pressure coordinates. eosType='JMD95Z' in |
343 |
|
combination with buoyancyRelation='OCEANICP' now causes an error. |
344 |
|
o Changed p = pressure(i,j,k,bi,bj) to p = pressure(i,j,kRef,bi,bj) |
345 |
|
in find_alpha/beta. |
346 |
|
checkpoint46d_pre |
347 |
|
|
348 |
|
o Changed p = pressure(i,j,k,bi,bj) to p = pressure(i,j,kRef,bi,bj) |
349 |
|
so that JMD95Z and JMD95P give approptiate static stability in find_rho. |
350 |
|
|
351 |
|
checkpoint46c_post |
352 |
|
o Changes necessary for ocean in p-coordinates |
353 |
|
- Added new buoyancy relation = 'OCEANICP' |
354 |
|
- Added new parameters = gravitySign (this used to be contained inside |
355 |
|
the factor dRdZ which I added when we first switched to R coordinates). |
356 |
|
X GM/Redi is not compatible (yet) |
357 |
|
X bottom drag and no-slip need to be debugged. |
358 |
|
checkpoint46c_pre |
359 |
|
|
360 |
|
checkpoint46b_post |
361 |
|
o Added new equation of state -> JMD95Z and JMD95P |
362 |
|
- EOS of Jackett and McDougall, 1995, JAOT |
363 |
|
- moved all EOS parameters into EOS.h |
364 |
|
- new routines ini_eos.F, store_pressure.F |
365 |
|
o Added UNESCO EOS, but not recommended because it requires |
366 |
|
in-situ temperature (see JMD95) |
367 |
|
o Modified formatting for knudsen2.f in utils/knudsen2 and added |
368 |
|
unesco.f to be used with POLY3 |
369 |
|
checkpoint46b_pre |
370 |
|
|
371 |
|
checkpoint46a_post |
372 |
|
o Added (atmospheric) pressure loading |
373 |
|
- new field in FFIELDS.h, etc... |
374 |
|
- new cpp flag ATMOSPHERIC_LOADING |
375 |
|
o Changed hFacC to _hFacC in calc_phi_hyd.F |
376 |
|
o Added SHORTWAVE_HEATING to some files for consistency |
377 |
|
checkpoint46a_pre |
378 |
|
|
379 |
|
checkpoint46 |
380 |
|
further merges from release1_p5 |
381 |
|
o new ctrl package |
382 |
|
- adopted from ECCO environment to enable optimization |
383 |
|
- added Eliassen Palm fluxes to controls |
384 |
|
o added Eliassen Palm flux controls to gradient check package |
385 |
|
o cost package |
386 |
|
- Compatible with new ctrl package |
387 |
|
- added Eliassen Palm cost hooks |
388 |
|
- modif's of existing cost functions |
389 |
|
o Adjoint-related bug fixes in kpp: |
390 |
|
- kpp_calc: sore of kpphbl avoids recomputation/call to S/R kppmix |
391 |
|
- kpp_routines: store of Rib avoids partial recomputation bug of TAF. |
392 |
|
o autodiff package |
393 |
|
- flow directives: |
394 |
|
+ new for S/R do_the_model_io |
395 |
|
+ enhanced for S/R checkpoint |
396 |
|
+ new gmredi.flow |
397 |
|
- Introduced CPP option ALLOW_AUTODIFF_MONITOR to |
398 |
|
disable adcommon.h/g_common.h by default. |
399 |
|
- fixed problem for adjoint of global_max |
400 |
|
o modified verification/carbon/ |
401 |
|
o New setup for adjoint of global_ocean |
402 |
|
o added hooks for Eliassen Palm fluxes (dynamics.F, ini_fields.F) |
403 |
|
o cleaned TAF keys iikey, idkey (dynamics.F, thermodynamics.F) |
404 |
|
o incorporated hooks for sponge layer code (external_forcing.F) |
405 |
|
|
406 |
|
checkpoint45d_post |
407 |
|
o import 2 fixes from release1_p5 (CG2D.h & packages_readparms.F) |
408 |
|
o use recip_dx*,recip_dy* instead of /dx*,/dy* in orlanski_E,W,N,S |
409 |
|
(affects plume_on_slope "cg2d" output) |
410 |
|
o add new parameter deltaTfreesurf for free-surface time stepping |
411 |
|
o exchange gT,gS when using staggerTimeStep & GM & Oly<4 |
412 |
|
o NONLIN_FRSURF: rescale gNm1 to get a better conservation with A-B |
413 |
|
o change phiMin in exp1 (to agree with documentation) |
414 |
|
o add new flags: |
415 |
|
- T,S forcing inside/outside Adams-Bashforth |
416 |
|
- turn off temp,salt advection and/or forcing |
417 |
|
- for each tracer, define internal flag for multiDimAdvection & A-B |
418 |
|
o monitor: change definition of KE to check conservation of Energy |
419 |
|
|
420 |
|
checkpoint45c_post |
421 |
|
o Removed f90 comments ("!") |
422 |
|
o Modified initialisations to enable exf package for MITgcm |
423 |
|
(without invoking ECCO_PACKAGE). |
424 |
|
o modifications to gradient check package (Martin Losch) |
425 |
|
- enable centered differences |
426 |
|
- modified format of standard output |
427 |
|
|
428 |
|
checkpoint45b_post |
429 |
|
o cleaned exchange calls in cg2d |
430 |
|
o Included CPP option ALLOW_AUTODIFF_MONITOR in forward_step |
431 |
|
o included CPP option SINGLE_LAYER_MODE in thermodynamics |
432 |
|
to configure barotropic setup (Martin Losch) |
433 |
|
o moved some initialisations within bi,bj loop in dynamics |
434 |
|
(TAF flow dependency) |
435 |
|
o in initialise_varia, moved call packages_init_variables |
436 |
|
before convective_adjustment_init |
437 |
|
(corresponding adjustment of TAF tape initialisation). |
438 |
|
o in calc_diffusivity/calc_viscosity extended domain to full overlap. |
439 |
|
|
440 |
|
checkpoint45a_post |
441 |
|
o compute Rho over the whole domain (extend iMin,jMin indices) |
442 |
|
o specific exchange for X-slice domain (case Ny=1) |
443 |
|
o argument futureIter of S/R obcs_calc missing in exp4 & internal_wave /code |
444 |
|
o solve_for_pressure : set cg2d_x to zero where OBCS are applied |
445 |
|
|
446 |
|
checkpoint44h_post = checkpoint45 |
447 |
|
o Fix to restore differentiability: |
448 |
|
place at which packages_init_variables is called in |
449 |
|
initialise_varia is crucial for reverse control flow. |
450 |
|
o modifications in GMRedi to enable stable adjoint |
451 |
|
(corresponding modif's in thermodynamics, dynamics) |
452 |
|
o added missing hook for sponge layer code in external_forcing |
453 |
|
o modified test cost functions |
454 |
|
o storing in gad_advection (plus removal of write(0,*)! |
455 |
|
o missing headers TR1.h added in convective_adjustment routines |
456 |
|
o errorMessageUnit set non-equal zero in eeboot |
457 |
|
(conflict on some platforms, e.g. IBM SP3) |
458 |
|
o modified carbon verif. |
459 |
|
|
460 |
|
checkpoint44h_pre |
461 |
|
o vertical grid option: allow to put the Interface at the middle between |
462 |
|
2 cell-centers ; replace delZ in pkg/kpp by drF. |
463 |
|
o GM Advective form: Tracers are advected using the residual transport (= |
464 |
|
Euler+GM-bolus); set param GM_AdvSeparate=T to return to previous form. |
465 |
|
|
466 |
checkpoint44g_post |
checkpoint44g_post |
467 |
o fix surface correction term in multiDimAdvection (affects plume_on_slope |
o fix surface correction term in multiDimAdvection (affects plume_on_slope |
468 |
results) ; ifdef missing in thermodynamics.F |
results) ; ifdef missing in thermodynamics.F |