/[MITgcm]/MITgcm/doc/tag-index
ViewVC logotype

Diff of /MITgcm/doc/tag-index

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.141 by heimbach, Fri Feb 28 05:21:22 2003 UTC revision 1.207 by dimitri, Thu Nov 13 06:35:13 2003 UTC
# Line 3  $Header$ Line 3  $Header$
3      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
4      ==============================      ==============================
5    
6    o modifications to make FREEZE flux visible to pkg/kpp
7      - moved surfaceTendencyTice from pkg/seaice to main code
8      - FREEZE moved to FORWARD_STEP
9      - subroutine FREEZE now limits only surface temperature
10        this means new output.txt for global_ocean.90x40x15,
11        global_ocean.cs32x15, and global_with_exf, but note
12        that results for these three experiments remain
13        bit-identical to before if allowFreezing=.FALSE.
14    o added surface flux output variables to TIMEAVE_STATVARS
15    o time-averaged output for pkg/ptracers
16    
17    checkpoint52a_pre
18    o some bug fixes for #undef REAL4_IS_SLOW
19    
20    checkpoint52 = ecco_c52_e35
21    o after testing adjoints of checkpoint51u_post
22    
23    checkpoint51u_post
24    o this is the post-merge tag of the ecco-branch
25      (needs another clean checkout and re-testing)
26    o various natl_box_adjoint configs and results
27      but no input fields
28    o obcs adjoint not yet merged!
29    o adding ECCO global 1x1 and 2x2 degree configs
30    o updated/extended some store directives for seaice
31    o pkg/ecco now containes ecco-specific part of cost function
32    o top level routines the_main_loop, forward_step
33      supersede those in model/src/
34      previous input data.cost now in data.ecco
35      (new namelist ecco_cost_nml)
36    o in ctrl/ cleaned some cross-dependencies and updated CPP options
37    
38    checkpoint51t_post
39    o this is the pre-merge tag of the ecco-branch
40    
41    checkpoint51s_post
42    o cleanup: removed various obsolete #define-s
43    o pkg/grdchk
44      - renamed 'ph-grd 3' to 'grad-res'
45      - merged from ecco-branch
46        (remaining bug fixes for obcs gradient checks)
47      - additional high-precision output for testreport
48        (grep for 'precision_grdchk_result')
49    
50    checkpoint51r_post
51    o cleaned up or removed CPP_OPTIONS.h files
52    o updated results for some of the tests to reflect the new
53      optfiles (-ieee: -O0 instead of -O3)
54    
55    checkpoint51q_post
56    o cd_code:
57      - moved cd_scheme.F -> cd_code_scheme.F
58      - separate read_checkpoint from cd_code_ini_vars.F
59      - separated cd_code part from write_checkpoint
60      - updated AD_SOURCE, generated .flow
61      - added CD_CODE_VARS.h to the_main_loop
62      - Moving cd_code specific store dir.s to pkg/cd_code
63    o ctrl package totally restructured
64      - pack/unpack now optional and decoupled from
65        xx_/adxx_ I/O
66      - ctrl_pack/unpack cleaned
67        (new routines ctrl_init_ctrlvar.F, pkg/ctrl/ctrl_init_wet.F)
68      - confined inclusion of AD_CONFIG.h to where necessary.
69    o genmake2: changed AD dependencies from SRCFILES to AD_FILES
70    
71    checkpoint51p_post
72    o create initial cd_code package
73      - WARNING: the initialization of fields within packages
74        is broken because INI_FIELDS (where READ_CHECKPOINT is
75        called) is called *before* PACKAGES_INIT_VARIABLES.
76        This seems to be backwards since
77        1) its important to initially zero the entire field including
78           the "halo" region
79        2) zeroing needs to be done *before* reading pickup info
80           and the pickup call might or might not happen in any
81           particular run
82      - this needs an overhaul for R2
83    o cleanup verification/*/code/GMREDI_OPTIONS.h
84    o cleanup testreport
85    
86    checkpoint51o_post
87    o bringing AD-related verif's up to date with genmake2
88      - carbon/
89      - global_ocean.90x40x15/
90      - hs.94.1x64x5/
91      - (front_relax/ )
92    o (more) consistent directory structure for AD-related verif.'s
93    o cleaning ALLOW_GRADIENT_CHECK -> ALLOW_GRDCHK
94    o cleaning some ALLOW_TANGENTLINEAR_RUN -> ALLOW_AUTODIFF
95    o bug fix in find_alpha.F for MDJWF:
96      - modif. to alpha = 1/D*( dN/dT - rho*dD/Dt) to account for
97        change rho -> rho-rhoConst
98      - replace call find_rho to find_rhonum
99    o initialisation of rFlx extended to full array (required by TAF)
100      and shifted to thermodynamics
101    o removed PTRACERS.h in ptracers routine
102    o added surfacetendencyPtr to S/R parameter list pracers_forcing
103    o Correcting initialisations for fVerU, fVerV.
104    o helping TAF to recognize dependency on kUp for
105      fVerU, fVerV
106    o Replacing delZ by delR in pkg/ctrl/
107    checkpoint51o_pre
108    
109    o undid all of cp51 pending some cleanups and discussion
110    o added the [#include "AD_CONFIG.h"] statement to all files that need
111       it for adjoint/tl #defines
112     o re-worked the build logic in genmake2 to support AD_CONFIG.h
113     o removed tools/genmake since it no longer works
114    
115    checkpoint51n_post
116    o modifications to make FREEZE flux visible to pkg/kpp
117      - moved surfaceTendencyTice from pkg/seaice to main code
118      - FREEZE & EXTERNAL_FORCING_SURF moved to FORWARD_STEP
119      - subroutine FREEZE now limits only surface temperature
120        (this means new output.txt for global_ocean.90x40x15,
121         global_ocean.cs32x15, and global_with_exf)
122    o added surface flux output variables to TIMEAVE_STATVARS
123    
124    checkpoint51n_pre
125    o added "#undef ALLOW_USE_MPI" support to eesupp/src/gather_2d.F
126    o added [#include "AD_CONFIG.h"] to all files that use the following
127      defines:
128      - ALLOW_ADJOINT_RUN
129      - ALLOW_TANGENTLINEAR_RUN
130      - ALLOW_ECCO_OPTIMIZATION
131    
132    checkpoint51m_post
133    o incorporating changes to get TAMC/TAF working in genmake2
134      - added new TAMC/TAF targets to the Makefile
135      - various cleanups related to package handling
136      - these changes should have no impact on the forward model
137    
138    checkpoint51l_post
139    o changes to pkg/cal and pkg/exf that allow and speed-up long integrations
140     - faster algorithm for cal_addtime.F
141     - higher precision arithmetic, where needed
142     - pkg/exf *startdate variables changed from calendar date to
143       model integration time
144    
145    checkpoint51l_pre
146    o add salt flux to forcing fields (used when salty sea-ice forms or melts)
147    o enable to apply restoring on S & T only in a latitude band.
148    o update output (external_forcing_surf modif. change truncation errors)
149       global_ocean.cs32x15, global_ocean_pressure, lab_sea, natl_box
150    
151    checkpoint51k_post
152    o change default to: useNHMTerms=.FALSE.
153     - new output.txt for atmos. exp (NHMTerms were wrong but now turned off):
154       adjustment.128x64x1, aim.5l_Eq_Ch, aim.5l_LatLon, hs94.128x64x5, hs94.1x64x5
155     - new output.txt for idealized oceanic exp (NHMTerms are now turned off):
156        exp1, ideal_2D_oce
157     - change data file of oceanic exp (leave the results unchanged for now)
158       exp2, global_ocean[90x40x15,pressure,with_exf], lab_sea, natl_box
159    o set gravitySign automatically according to the vertical coordinate used
160      (and change sign: back to "logical" value: +1 when R increases downward)
161    o added an include barrier to the default CPP_OPTIONS.h and
162      removed the #include "PACKAGES_CONFIG.h" from it
163    o fix a bug in mom_fluxform (from chk51j_post)
164    
165    checkpoint51j_post
166    o Added some AD-related initialisations in mom_vecinv/ mom_fluxform/
167    o adjusted some flow directives (dynamics, thermodynamics)
168    o added cubed-sphere case to test cost function
169    o heckpoint_lev?_directives.h now include
170      pkg-specific directives, whenever those are enabled.
171    o Moving pkg-specific flow directives to corresponding pkg
172      Moving pkg-specific differentiation list to corresponding pkg
173      Moving pkg-specific checkpoint-lev storing to corresponding pkg
174      ---> conventions are
175           - pkg_ad.flow
176           - pkg_ad_diff.list
177           - pkg_ad_check_lev?_dir.h
178    
179    checkpoint51i_post
180    o merge of the branch-genmake2
181      - knowingly breaks the older genmake
182      - automatic generation of all ALLOW_${PKG_NAME} defines
183      - new testreport supersedes older testscript
184    o large number of package inclusion and header cleanups
185    checkpoint51i_pre
186    
187    o new output for adjoin of global ocean vector invariant
188    o fix for checkpoint of thermodynamic seaice and bulk_force
189    o Steph gchem various cleanups
190    
191    checkpoint 51h_pre
192    o fixed some single quotes
193    o modify gchem pkg to be more versatile
194    o modifications to clean up dic pkg
195    o add pkg/cfc
196    
197    checkpoint51g_post
198    o provide links for ARPACK and ADM*TLM
199    o start removing verification/vero/
200    o update AD-related stuff
201      (in particular some IF-statements in model/src/ routines)
202    o adding to verification/global_ocean.90x40x15/ adjoint of
203      vector invariant setup
204    
205    checkpoint51f_post
206    o update advect_xz/output.txt (left from chekpoint50f_pre, ini_vel modif)
207    o Mods and bug fixes to pkg/cal, pkg/exf, etc., needed for computation
208      of tracer Green's fucntions for ocean inversion project.
209    
210    checkpoint51f_pre
211    o Added on-the-fly spatial interpolation capability
212        "USE_EXF_INTERPOLATION" to pkg/exf.
213      - This is a temporary Cartesian-grid hack until
214        the super-duper ESMF coupler becomes available.
215      - See verification/global_with_exf/README for usage example.
216      - Removed obsolete EXFwindOnBgrid and SEAICEwindOnCgrid
217        flags and modified pkg/seaice accordingly.
218    o Bug fix to pkg/ptracers, pkg/generic_advdiff/gad_calc_rhs.F,
219        and pkg/kpp/kpp_transport_ptr.F for dealing with tracer
220        non-local transport term.
221    
222    checkpoint51e_post
223    o pkg/mom_vecinv:
224      - changes related to hFac: use S/R from aim.5l_cs/code (coriolis & vort.advec)
225      - add time-ave diagnostic of vorticity advection.
226    o add diagnostic (instantaneous) of Shapiro Filter effect for T,S & UV.
227    o atmospheric geopotential: - include water vapor effect;
228                                - use p^kappa in p* scaling.
229    o land pkg: read initial state from files.
230    o AIM : add stratospheric drag in the upper level
231    
232    checkpoint51d_post
233    o change function ILNBLNK (=> last non-blank char.) to return zero
234      (instead of the string length) when the string. char is empty
235    o fix bug in dxV,dyU definition of cubed-sphere grid (ini_curvilinear_grid)
236    o modif's to restore TAMC compatibility
237      - avoid "_d" constructs in PARAMETER declarations
238      - avoid interrupting lines by comment lines
239    o Use cluster local disks for purely local I/O
240      vs. globally visible disks needed for ctrl stuff
241      (merged from ecco-branch)
242      - new active_file_loc... and mdsio_..._loc routines
243      - affected packages: autodiff, ctrl, grdchk, mdsio
244    
245    checkpoint51c_post
246    o introducing integer flag debugLevel
247      - debLevZero: suppress all output
248      - debLevA: standard
249      - debLevB: equivalent to current debugMode=.TRUE.
250    o introducing pathname variable mdsioLocalDir for mdsio
251      that can be specified at runtime
252      (relevant for cluster I/O to local disk)
253    `
254    >>>checkpoint51b_post
255    adjoint of ptracers
256    o disentangled ALLOW_PTRACERS using new ALLOW_GCHEM
257    o extended state in checkpoint_lev?, etc.
258    o alternative ctrl/cost with tr1 or ptracer
259    o new comlev1_bibj_ptracers
260    o new ptracers.flow
261    o made ptracers_forcing same as external_forcing_s
262    o added verification for adjoint with ptracers
263      - adm. grdchk fail so far
264      - tlm. grdchk OK
265      - checked tapelev/comlev recomputations: OK
266    <<<checkpoint51b_pre
267    
268    checkpoint51a_post
269    o added code for biogeochemistry package
270      - new pkgs: dic, gchem
271      - new subroutine in ptracers
272    o modify code for biogeo packages
273      - in model/src and pkg/ptracers
274    
275    checkpoint51
276    o merged improved packages from ecco-branch (ecco_c51_e34) to MAIN
277      - autodiff, ctrl, exf, grdchk, seaice
278      kept separate packages
279      - cost, ecco, obcs
280    o updating verification/internal_wave, verification/lab_sea
281      (all verif's pass on faulks.lcs.mit.edu RH7.3, g77)
282    
283    checkpoint50i_post
284    o Preparing next differentiable checkpoint and sync
285      of MAIN vs. ecco-branch
286      - 1st step: this one is differentiable
287      - 2nd step: next(! not this) checkpoint will have updated packages
288                  from ecco-branch)
289    
290    checkpoint50h_post
291    o new package "land": provide surface BC for AIM.
292    o pkg/ptracers: apply exchange to all tracers after reading a pickup.
293    o AIM: use true log-P extrapolation for near surface temp (= as in
294        F.Molteni paper) ; update aim.5l_cs output.
295    o New variable in PARM03 for more flexible pickups
296    o somewhat cleaned package initialisation sequence for
297      ctrl/ cost/ ecco/ in packages_... routines
298    
299    checkpoint50g_post
300    o merged with release1_p17 (pkg/seaice and verification/lab_sea)
301      - added SEAICE_MULTILEVEL for 8-category sea-ice thermodynamics
302      - LSR sea-ice dynamic solver moved to SouthWest B-grid location and
303        made the default because of faster convergence than ADI
304    
305    checkpoint50f_post
306    o exf totally restructured
307      - replaced all exf_set_ routines by one generic exf_set_gen.F
308        and made sure it's still differentiable
309      - split exf_getffields.F into new exf_bulkformulae.F
310      - exf_inscal_/exf_outscal_ suffixes consistent with field names
311      - updated adjoint/makefile and relevant verif. accordingly
312    
313    checkpoint50f_pre
314     o AIM: near surface temp evaluated from Pot.Temp: fixed for Part Cell ;
315          + change Evap over land. (update aim.5l_cs output)
316     o added missing .cvsignores and made uniform across expts
317     o changed configuration of tidal_basin_2d expt
318     o added pkg/debug functions for tracing code in fatal crashes
319     o tidied pkg/monitor to use MONITOR_OPTIONS.h
320     o new fn in pkg/monitor to stop model if solution grows too big
321     o removed lots of single quotes from comments
322    
323    checkpoint50e_post
324    o make KPP work with PTRACERS
325     - fix gad_calc_rhs to call new routine kpp_transport_ptr, which is
326       nearly a copy of kpp_transport_s
327     - there is no analogue to SurfaceTendencyS, so I have to use
328       gPtr(of the surface layer) instead
329    o add a new platform SunFire+mpi (SunFire 15000) to genmake
330    checkpoint50e_pre
331    
332    checkpoint50d_post
333    o change kpp output from multiple-record state files to single-record state
334      files analogous to write_state.F
335    o reduce the output frequency of cg3d-related stuff to the monitor frequency,
336      analogous to the cg2d-related output.
337    o fix small problem with in ptracers_write_checkpoint.F: len(suff)=512,
338      so that writing to internal file fn (with length 512) fails.
339    checkpoint50d_pre
340    
341    checkpoint50c_post
342    o fix problem in ini_procs.F when using MPI (was there since checkpoint48f)
343    o add monitor diagnostic of vorticity (mon_vort3.F) and potential energy.
344    o add time-average diagnostic of U*V and vertical diffusive flux for theta.
345    o bug fixed in convective adjustment diagnostic (multi-tile set-up).
346    o 4th Order Adv scheme: return to previous (c40pre7) masking near boundaries.
347    
348    checkpoint50c_pre
349    Merging from release1_p13:
350    o bug fix for pkg/seaice dynamic solver
351    o Added SEAICE_initialHEFF to pkg/seaice
352    
353    checkpoint50b_post
354    o store u*,v* in gU,V instead of in guNm1,gvNm1
355    o in order to put the momForcing out of the Adams-Bashforth:
356      move forcing & CD-scheme calls from mom_fluxform & mom_vecinv
357      to timestep.F
358    o new flag "useCDscheme" (default=F); replace guCD,gvCD by local arrays
359    o re-generate output for highly sensitive test-exp:
360       global_ocean_pressure, ideal_2D_oce, lab_sea, natl_box
361    
362    checkpoint50b_pre
363    o restore the use of momAdvection & useCoriolis flags (mom_vecinv)
364    o corrected CPP option mismatch in exf_Bulk... functions for case
365      #define ALLOW_ATM_WIND && #undef ALLOW_ATM_TEMP
366    
367    checkpoint50a_post
368    o Bug fix for merging between c50 and KPP.
369      ikey was passed from thermodynamics to kpp_calc via
370      common block rather than being recomputed in kpp_calc,
371      in contradiction with new key itdkey.
372      New key ikppkey created, and tamc.h headers updated.
373    
374    checkpoint50
375    - 2nd step of merge with ecco-branch:
376      merge changes in ecco-branch back into main trunk
377    - bug fix in find_alpha
378    - more storing in gmredi_calc_tensor.F, kpp_routines.F
379    - avoid iterative loop in ini_pressure for ALLOW_AUTODIFF_TAMC
380    - merged some sliced AD support routines
381    
382  checkpoint49  checkpoint49
383    merged from ecco-branch:
384    o exf:
385      - Enable initialisation of forcing fields to constant
386        (runtime) values.
387      - in exf_getffields.F
388        Reduce i-/j-loop to interior domain, discarding overlaps.
389        That also fixes wrong TAF-key computations for key_1, key_2
390        with bulf formulae.
391      - exf_init.F modify #ifdef for exf_init_evap
392      - exf_getffieldrec.F, ctrl_getrec.F
393        The following INT-usages are not safe:
394          fldsecs  = int(fldsecs/fldperiod)*fldperiod
395          fldcount = int(fldsecs/fldperiod) + 1
396        and were modified.
397    o autodiff: checkpoint_lev...
398      - updated storing for bulk formulae (some arrays were missing)
399      - added state for seaice package
400      - synchronized with main branch
401    o DIVA:
402      Modif.s in
403      - the_main_loop.F
404      - the_model_main.F
405      and added cost_final_restore.F cost_final_store.F
406      o With these changes, it is possible to fully separate
407        the first forward run to compute the cost function (mdthe_main_loop)
408        and adjoint runs over individual DIVA intervals (adthe_main_loop)
409        into separate model executions.
410        This enables better tuning of DIVA to given queue sizes.
411      o Loss of cost function value in consecutive DIVA runs is
412        fixed by storing to 'costfinal' file.
413      o Appropriate call of ctrl_unpack/_pack,grdchk_main at
414        beginning/end of adjoint integration is accounted for.
415      The current changes apply to TAF-1.4.26.
416      TAF has one remaining bug, requiring one manual change
417      (see MITgcm manual).
418    o cal: synchronized between MAIN and ecco-branch
419    
420    checkpoint48i_post
421  o Changes to restore differentiability of code w.r.t. previous tag  o Changes to restore differentiability of code w.r.t. previous tag
422    (mostly adding new routines to make list and replacing    (mostly adding new routines to make list and replacing
423    pressure by totPhiHyd).    pressure by totPhiHyd).

Legend:
Removed from v.1.141  
changed lines
  Added in v.1.207

  ViewVC Help
Powered by ViewVC 1.1.22