3 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
4 |
============================== |
============================== |
5 |
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|
6 |
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untagged |
7 |
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o improve "ini_p_ground" when using finite difference form for calc_phi_hyd |
8 |
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o Added net flux to downward flux conversion to pkg/exf/exf_getffields.F |
9 |
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o Added SEAICE_initialHEFF to pkg/seaice |
10 |
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o SEAICE_WRITE_PICKUP needs to be called before WRITE_CHECKPOINT |
11 |
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|
12 |
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checkpoint48g_post |
13 |
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--- EOS: |
14 |
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o compute locally the pressure for use in EOS: UNESCO, JMD95P, MDJWF |
15 |
|
store total Potential in totPhyHyd for diagnostics & EOS. |
16 |
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o fix restart and overlap Pb when using Z-coord and EOS funct. of P |
17 |
|
--- Pressure/geopotential gradient: |
18 |
|
o use Ro_surf & R_low instead of hFac in cal_phi_hyd: |
19 |
|
o NLFS + p-coord.: eta*Alpha' is not longer lagging 1.time-step behind |
20 |
|
( changes results of global_ocean_pressure ) |
21 |
|
o NLFS + z-coord.: add eta*Rho' contribution. |
22 |
|
o accurate phiHyd when using interface-W at the middle between 2 centers |
23 |
|
( changes results of ideal_2D_oce ) |
24 |
|
o includes r* 2nd term in potential gradient. |
25 |
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|
26 |
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checkpoint48f_post |
27 |
|
Merging from release1_p12: |
28 |
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o Modifications for using pkg/exf with pkg/seaice |
29 |
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- improved description of the various forcing configurations |
30 |
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- added basic radiation bulk formulae to pkg/exf |
31 |
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- units/sign fix for evap computation in exf_getffields.F |
32 |
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- updated verification/global_with_exf/results/output.txt |
33 |
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o Added pkg/sbo for computing IERS Special Bureau for the Oceans |
34 |
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(SBO) core products, including oceanic mass, center-of-mass, |
35 |
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angular, and bottom pressure (see pkg/sbo/README.sbo). |
36 |
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o Lower bound for viscosity/diffusivity in pkg/kpp/kpp_routines.F |
37 |
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to avoid negative values in shallow regions. |
38 |
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- updated verification/natl_box/results/output.txt |
39 |
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- updated verification/lab_sea/results/output.txt |
40 |
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o MPI gather, scatter: eesupp/src/gather_2d.F and scatter_2d.F |
41 |
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o Added useSingleCpuIO option (see PARAMS.h). |
42 |
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o Updated useSingleCpuIO option in mdsio_writefield.F to |
43 |
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work with multi-field files, e.g., for single-file pickup. |
44 |
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o pkg/seaice: |
45 |
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- bug fix in growth.F: QNET for no shortwave case |
46 |
|
- added HeffFile for specifying initial sea-ice thickness |
47 |
|
- changed SEAICE_EXTERNAL_FLUXES wind stress implementation |
48 |
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o Added missing /* */ to CPP comments in pkg/seaice, pkg/exf, |
49 |
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kpp_transport_t.F, forward_step.F, and the_main_loop.F |
50 |
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o pkg/seaice: |
51 |
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- adjoint-friendly modifications |
52 |
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- added a SEAICE_WRITE_PICKUP at end of the_model_main.F |
53 |
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|
54 |
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checkpoint48e_post |
55 |
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o New S/R for diagnostic of bottom pressure (phi0surf was missing in c48d_post) |
56 |
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o dynamics: change definition of computational domain & adapt mom_fluxform |
57 |
|
accordingly ; when viscA4=0, allows to run the dynamics with Olx=Oly=2. |
58 |
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o following exp works with Olx=Oly=2 (and pass through checkbounds option): |
59 |
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adjust_nlfs.cs-32x32x1 adjustment.128x64x1 adjustment.cs-32x32x1 |
60 |
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exp0 exp1 exp2 exp4 exp5 hs94.cs-32x32x5 hs94.128x64x5 hs94.1x64x5 |
61 |
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global_ocean.90x40x15 global_with_exf global_ocean_pressure |
62 |
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inverted_barometer solid-body.cs-32x32x1 |
63 |
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(high order AdvScheme and/or multiDimAd works with Olx=Oly=2 ? not sure) |
64 |
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|
65 |
|
checkpoint48d_post |
66 |
|
o in preparation for r*: |
67 |
|
a) use pre-computed gradient of hydrostatic potential: |
68 |
|
changes in timestep.F & mom_cdscheme.F affects results of ideal_2D_oce |
69 |
|
b) move phi0surf from calc_phi_hyd to calc_grad_phi_hyd: |
70 |
|
=> affects results of glob_oce_pressure (different truncation error) |
71 |
|
update output.txt of ideal_2D_oce & global_ocean_pressure |
72 |
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|
73 |
|
checkpoint48d_pre |
74 |
|
o in preparation for r*: |
75 |
|
new S/R (calc_grad_phi_hyd.F) to compute Hydrostatic potential gradient. |
76 |
|
pass the 2 comp. of the grad. as arguments to momentum S/R. |
77 |
|
but for the moment, only used if it does not change the results. |
78 |
|
o add finite volume form of calc_phi_hyd for buoyancyRelation OCEANIC & OCEANICP |
79 |
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|
80 |
|
checkpoint48c_post |
81 |
|
Modifications in treatment of initial flux forcing controls |
82 |
|
to avoid extra storing of flux fields. |
83 |
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|
84 |
|
checkpoint48c_pre |
85 |
|
o Added tidal_basin_2d experiment (currently 1D!) |
86 |
|
o can use r* Coordinate with OBC (but Orlanski Rad. BC not yet implemented) |
87 |
|
|
88 |
|
checkpoint48b_post |
89 |
|
o r* coordinate added in #ifdef NONLIN_FRSURF block. |
90 |
|
(modification to pressure gradient not yet implemented) |
91 |
|
o mom_fluxform: new S/R mom_calc_rtrans.F computes vertical transports |
92 |
|
(for U & V) that are used for vertical advection of momentum. |
93 |
|
|
94 |
|
checkpoint48a_post |
95 |
|
o In preparation for r*, use temp. array to compute vertical transport |
96 |
|
in flux-form momentum pkg. => change results of few test-exp. |
97 |
|
Update output of: exp4, exp5, front_relax, global_ocean_pressure, |
98 |
|
lab_sea, natl_box & plume_on_slope |
99 |
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|
100 |
|
checkpoint48 |
101 |
|
o fix small bug that was causing lot of warning (TIMER_STOP 'UPDATE_CG2D') |
102 |
|
|
103 |
|
checkpoint47j_post |
104 |
|
o add new exp. (ideal_2D_oce) to test "exotic" parameters and options. |
105 |
|
o moved adexch from forward_step to addummy_in_stepping |
106 |
|
o added exch in ctrl_map_... |
107 |
|
o aveFreq.=0. at end of cost_final to avoid overwrite in |
108 |
|
reverse checkpointing loop |
109 |
|
o Yet more changes in gmredi: |
110 |
|
* adgmredi_calc_tensor |
111 |
|
avoiding all recomputation of gmredi_slope_limit |
112 |
|
* adgmredi_x/y/rtransport |
113 |
|
added flag for excessive storing to avoid recomp. of |
114 |
|
u/v/rtans, dTdx/y/z |
115 |
|
-> this is not really necessary and very memory-consuming |
116 |
|
* adgmredi_slope_psi: |
117 |
|
consistency with gmredi_slope_limit in treatment of GM_slopeSqCutoff |
118 |
|
* gmredi_slope_limit |
119 |
|
re-activated full calculation of taperfct for case 'ac02' |
120 |
|
o updating verification/ adjoints of carbon, global_ocean.90x40x15 |
121 |
|
|
122 |
|
checkpoint47i_post |
123 |
|
o GM_EXCLUDE_() replace GM_TAPER_(): by default, all the code is compiled. |
124 |
|
o add GM_Small_Number & GM_slopeSqCutoff as run-time parameters (data.gmredi) |
125 |
|
default values = 1.D-12 & 1.D+48 (=> give same results as checkpoint47f_post) |
126 |
|
o cg2dTargetResWunit: define tolerance using deltaTmom (and not deltaTfreesurf) |
127 |
|
o gmredi: fix few bugs. |
128 |
|
|
129 |
|
checkpoint47h_post (duplicate tag for PH's c48 tag, in order to move c48) |
130 |
|
This will be a good checkpoint to plug into the ecco-branch. |
131 |
|
o few modif.'s to get latest version adjointed |
132 |
|
(mainly kick out code in ini_linear_phisurf) |
133 |
|
o modif's to run adjoint with exactConserv |
134 |
|
o case GM_BOLUS_ADVEC should be cleaned |
135 |
|
S/R gmredi_slope_psi should be cleaned |
136 |
|
o verification/carbon now has exactConserv=.TRUE. |
137 |
|
|
138 |
|
checkpoint47g_post |
139 |
|
o time-average AIM output: becomes independent from statvars time-average |
140 |
|
(can be used with #undef ALLOW_TIMEAVE) ; add new variables (e.g., RH) |
141 |
|
o After TAF bug fix: |
142 |
|
Tested adjoint of gmredi package. |
143 |
|
Tests were done with checkpoint47 rather than with latest |
144 |
|
checkpoint47f_post since the latter is broken for the adjoint |
145 |
|
verification/carbon/ contains both ADM and TLM gradient checks. |
146 |
|
Here they are, before they get changed/lost/stolen. |
147 |
|
Mostly modif.'s to fix numerical sensitivities. |
148 |
|
Gradient checks OK for |
149 |
|
- GM_taper_scheme: |
150 |
|
* clipping |
151 |
|
* ac02 |
152 |
|
* linear |
153 |
|
* glw91 |
154 |
|
* dm95 |
155 |
|
* ldd97 |
156 |
|
- GMREDI_OPTIONS: |
157 |
|
* GM_VISBECK_VARIABLE_K |
158 |
|
* GM_NON_UNITY_DIAGONAL |
159 |
|
* GM_EXTRA_DIAGONAL |
160 |
|
* GM_BOLUS_ADVEC |
161 |
|
in conjunction with data.gmredi parameters to be checked in |
162 |
|
in a few minutes under verification/carbon/code/ |
163 |
|
|
164 |
|
checkpoint47f_post |
165 |
|
Merging from release1_p10: |
166 |
|
o modifications for using pkg/exf with pkg/seaice |
167 |
|
- pkg/seaice CPP options SEAICE_EXTERNAL_FORCING |
168 |
|
and SEAICE_EXTERNAL_FLUXES |
169 |
|
- pkg/exf CPP options EXF_READ_EVAP and |
170 |
|
EXF_NO_BULK_COMPUTATIONS |
171 |
|
- usage examples are Experiments 8 and 9 in |
172 |
|
verification/lab_sea/README |
173 |
|
- verification/lab_sea default experiment now uses |
174 |
|
pkg/gmredi, pkg/kpp, pkg/seaice, and pkg/exf |
175 |
|
|
176 |
|
checkpoint47e_post |
177 |
|
o created a tag prior to creating a branch |
178 |
|
|
179 |
|
checkpoint47d_post |
180 |
|
o fixed bug in the oceanic pressure coordinates code: vertical viscosity |
181 |
|
at the bottom boundary had an erroneous half slip boundary condition |
182 |
|
o added bottom drag and no slip boundary condition capabilities to |
183 |
|
oceanic pressure coordinates code |
184 |
|
o added new verification experiment global_ocean_pressure, this experiment is |
185 |
|
also described in the tutorial section of the manual |
186 |
|
checkpoint47d_pre |
187 |
|
|
188 |
|
checkpoint47c_post |
189 |
|
o Added a verification experiment for a global cubed-sphere ocean run |
190 |
|
- verification/global_ocean.cubed32x32x30 |
191 |
|
- uses pkg/therm_seaice and pkg/bulk_forcing |
192 |
|
|
193 |
|
o allow to run AIM physics with SPEEDY input files (from Franco Molteni) |
194 |
|
o allow a more accurate definition of Ro_Surf (selectFindRoSurf=1) |
195 |
|
when using P-coordinate; only implemented for atmospheric config. |
196 |
|
o OCEANICP & realFreshWater: include P-E direct effect on wVel ; |
197 |
|
NOTES: requires option NONLIN_FRSURF to be "#define". |
198 |
|
o update advect_xz/results/output.txt (left from checkpoint44g_post) |
199 |
|
|
200 |
|
checkpoint47b_post |
201 |
|
Merging from release1_p9: |
202 |
|
o pkg/seaice |
203 |
|
- removed GOTO's and added taf directives |
204 |
|
- double precision constants to reduce the g77 (Linux) |
205 |
|
to F77 (SGI) differences reported in release1_p8 |
206 |
|
o tools/genmake |
207 |
|
- added SGI options |
208 |
|
o verification/testscript |
209 |
|
- updated to that of checkpoint47a_post |
210 |
|
o verification/global_ocean.90x40x15/input/eedata |
211 |
|
- modified for SGI f77 compatibility |
212 |
|
o verification/lab_sea |
213 |
|
- added description of sea-ice model |
214 |
|
- added missing matlab routines |
215 |
|
- added test of thermodynamics parallelization |
216 |
|
|
217 |
|
checkpoint47a_post |
218 |
|
o new pkg: aim_v23 |
219 |
|
= F. Molteni atmos.physics (SPEEDY, ver23) adapted to MITgcm. |
220 |
|
for now, keep the same surface forcing as before. |
221 |
|
- Part-Cell implemented into AIM; check that Heat & Water are conserved |
222 |
|
- aim.5l_cs: use new aim pkg (run 10yr & get better results than before) |
223 |
|
- aim.5l_LatLon & aim.5l_Equatorial_Channel are still using old aim pkg |
224 |
|
o add diagnostic of surface correction term in monitor output |
225 |
|
|
226 |
|
o bulk_force and therm_seaice |
227 |
|
- Two packages: bulk_force (Bulk forcing) |
228 |
|
and therm_seaice (thermodynamic_seaice) - adopted from LANL CICE.v2.0.2 |
229 |
|
- Earlier integration from Stephaine Dutkiewicz |
230 |
|
and Patrick Heimbach. |
231 |
|
- Two ifdef statements for compile time, |
232 |
|
ALLOW_THERM_SEAICE and ALLOW_BULK_FORCE |
233 |
|
|
234 |
|
checkpoint47 |
235 |
|
differentiable version of checkpoint46n_post |
236 |
|
o bug fix in quasihydrostaticterms |
237 |
|
o * "clean" adjoint code (in terms of extensive recomputations) |
238 |
|
can now be obtained for all GMREDI options (i.e. for |
239 |
|
- GM_VISBECK_VARIABLE_K |
240 |
|
- GM_NON_UNITY_DIAGONAL |
241 |
|
- GM_EXTRA_DIAGONAL |
242 |
|
- GM_BOLUS_ADVEC ) |
243 |
|
* However, wrong gradient check problem remains unsolved. |
244 |
|
* New CPP options have been introduced for different |
245 |
|
tapering schemes |
246 |
|
o external_fields_load now part of differentiation list |
247 |
|
o pressure needs multiple storing; |
248 |
|
would be nice to have store_pressure at beginning or |
249 |
|
end of forward_step, e.g. by having phiHyd global (5-dim.) |
250 |
|
(NB: pressure is needed for certain cases in find_rho, |
251 |
|
which is also invoked through convective_adjustment). |
252 |
|
o recomputations in find_rho for cases |
253 |
|
'JMD95'/'UNESCO' or 'MDJWF' are OK. |
254 |
|
o #define ATMOSPHERIC_LOADING should be differentiable |
255 |
|
o ini_forcing shifted to begining of initialise_varia |
256 |
|
o Incorporating QNVS line search routines into MITgcm |
257 |
|
(this is separate code, and therefore not under pkg) |
258 |
|
lsopt/, optim/ |
259 |
|
o Updated verification/carbon/ |
260 |
|
- #define GM_VISBECK_VARIABLE_K |
261 |
|
- GM_taper_scheme = 'ldd97' |
262 |
|
|
263 |
|
checkpoint46n_post |
264 |
|
Merging from release1_p8: |
265 |
|
o verification/natl_box: |
266 |
|
updating new external_fields_load routine |
267 |
|
o New package: pkg/seaice |
268 |
|
Sea ice model by D. Menemenlis (JPL) and Jinlun Zhang (Seattle). |
269 |
|
The sea-ice code is based on Hibler (1979-1980). |
270 |
|
Two sea-ice dynamic solvers, ADI and LSR, are included. |
271 |
|
In addition to computing prognostic sea-ice variables and diagnosing |
272 |
|
the forcing/external data fields that drive the ocean model, |
273 |
|
SEAICE_MODEL also sets theta to the freezing point under sea-ice. |
274 |
|
The implied surface heat flux is then stored in variable |
275 |
|
surfaceTendencyTice, which is needed by KPP package (kpp_calc.F and |
276 |
|
kpp_transport_t.F) to diagnose surface buoyancy fluxes and for the |
277 |
|
non-local transport term. Because this call precedes model |
278 |
|
thermodynamics, temperature under sea-ice may not be "exactly" at |
279 |
|
the freezing point by the time theta is dumped or time-averaged. |
280 |
|
N.B.: fairly large differences in accuracy occur across |
281 |
|
different platforms/compilers; comparison between |
282 |
|
g77 (Linux) and F77 (SGI Origin 2000/MIPSpro) |
283 |
|
generated output gives: |
284 |
|
T S U V |
285 |
|
C D M c m s m s m s m s |
286 |
|
n p a R g m m e . m m e . m m e . m m e . |
287 |
|
f n k u 2 i a a d i a a d i a a d i a a d |
288 |
|
g d e n d n x n . n x n . n x n . n x n . |
289 |
|
|
290 |
|
Y Y Y Y 5 5 7 7 7 8 10 9 6 6 6 6 7 5 7 5 7 FAIL lab_sea |
291 |
|
o GAD: |
292 |
|
- generated new common blocks to account for call of |
293 |
|
same gad routines with differing traceridentities |
294 |
|
(needed to modify tracerIdentity indices in GAD.h) |
295 |
|
- generated separate common blocks for case useCubedSphereExchange |
296 |
|
(Department of Futurology) |
297 |
|
- parameter lists to gmredi_?transport: added tracerIdentity |
298 |
|
- added new key indices to tamc.h |
299 |
|
o external_fields_load: |
300 |
|
- added this routine to TAF list |
301 |
|
- needed to make some common blocks global and additional storing |
302 |
|
along the same lines as exf package (checkpoint_lev?_directives.h) |
303 |
|
o exf: |
304 |
|
updated external forcing package |
305 |
|
- bug fixes carried over from ecco-branch |
306 |
|
(missing OBCS_OPTIONS.h in two routines) |
307 |
|
- enable easy to use "no forcing". |
308 |
|
- added exf I/O for atmospheric loading |
309 |
|
- added exf I/O for runoff data |
310 |
|
- transfered scaling between exf <-> MITgcm to exf namelist |
311 |
|
o Adding new verification experiment global_with_exf. |
312 |
|
This verification experiment is almost identical to the |
313 |
|
global_ocean.90x40x15 experiment, except that it uses |
314 |
|
the exf (and cal) package instead of the |
315 |
|
external_fields_load routine (cf README file). |
316 |
|
|
317 |
|
checkpoint46m_post |
318 |
|
o modified testscript to return -- when there are no lines of "%MON" output |
319 |
|
o added new flag "quasiHydrostatic" for QH mode |
320 |
|
and new routine quasihydrostaticterms() |
321 |
|
o added 2*Omega*Cos(phi)*W to u equations (non-hydrostatic Coriolis term) |
322 |
|
New routine: mom_u_coriolis_nh() |
323 |
|
o fixed sign of non-hydrostatic metric terms in u and v equations. |
324 |
|
Depend on correct sign of gravitySign. |
325 |
|
o added work.pc* to .cvsignore in aim directories using ifc |
326 |
|
o introduced flag for controllin non-hydrostatic metric terms |
327 |
|
o removed gravitySign from PARM04 |
328 |
|
o switched to g77/ifc from pgf77 in aim experiments |
329 |
|
|
330 |
|
checkpoint46l_post |
331 |
|
o made convective adjustment work with pressure coordinates: |
332 |
|
- changed the direction of k-loop in convective_adjustment.F for the |
333 |
|
case of pressure coordinates (OCEANICP,ATMOSPHERIC buoyancyRelation) |
334 |
|
- adjusted the reference pressure k-index in convective_adjustment.F |
335 |
|
- adjusted the convection condition in convect.F (in analogy to |
336 |
|
calc_ivdc.F) |
337 |
|
- convective_adjustment no longer computes anything on the halos |
338 |
|
- removed the warnings about negative salinity from find_rho.F and |
339 |
|
find_alpha.F; instead the new routine look_for_neg_salinity, called |
340 |
|
at the beginning of find_rho, find_alpha, and find_beta, does a |
341 |
|
check of the entire slice, if CPP-option |
342 |
|
CHECK_SALINITY_FOR_NEGATIVE_VALUES is defined |
343 |
|
checkpoint46l_pre |
344 |
|
|
345 |
|
checkpoint46k_post |
346 |
|
o fixed the verification/global_ocean.90x40x15 experiment: |
347 |
|
- new bathymetry (the world according to A., JMC, and M.) |
348 |
|
- new initial fields and forcing fields (*.bin files) |
349 |
|
- new POLY3.COEFFS (for the next release one should switch to a full |
350 |
|
equation of state: JMD95P or MDJWF) |
351 |
|
- fixed several errors and redundancies in the data file |
352 |
|
- experiment uses looped cells |
353 |
|
- added matlab directory with diagnostic scripts for plotting of output |
354 |
|
|
355 |
|
o S/R aim_initialise.F replace S/R aim_init from file aim_do_inphys.F: |
356 |
|
- read AIM physics parameters from a file (data.aimphys) |
357 |
|
- set defaults values = F.Molteni paper (Clim.Dyn., 2002) |
358 |
|
|
359 |
|
checkpoint46j_post |
360 |
|
o split calc_exact_eta in 2 S/R : integr_continuity & update_etaH |
361 |
|
o move wVel computation at the end of the time step, in S/R integr_continuity |
362 |
|
o create specific S/R to exchange T,S before DYNAMICS (for stagger time step) |
363 |
|
o update timeave pkg for wVel diagnostic. |
364 |
|
checkpoint46j_pre |
365 |
|
|
366 |
|
checkpoint46i_post |
367 |
|
o Clean up AIM package (and keep the results unchanged): |
368 |
|
include CPP_OPTION and use IMPLICT NONE in all routines ; |
369 |
|
declare all the variables _RL ; use _d 0 for all numerical constants. |
370 |
|
use ifdef ALLOW_AIM everywhere. And now AIM can be used with g77 ! |
371 |
|
|
372 |
|
checkpoint46h_post |
373 |
|
o cleaned up the use of rhoNil and rhoConst. |
374 |
|
- rhoNil should only appear in the LINEAR equation of state, everywhere |
375 |
|
else rhoNil is replaced by rhoConst, e.g. find_rho computes rho-rhoConst |
376 |
|
and the dynamical equations are all divided by rhoConst |
377 |
|
o introduced new parameter rhoConstFresh, a reference density of fresh |
378 |
|
water, to remove the fresh water flux's dependence on rhoNil. The default |
379 |
|
value is 999.8 kg/m^3 |
380 |
|
o cleanup up external_forcing.F and external_forcing_surf.F |
381 |
|
- can now be used by both OCEANIC and OCEANICP |
382 |
|
checkpoint46h_pre |
383 |
|
|
384 |
|
Added code to convert surface volume flux (fresh water) into |
385 |
|
a mass flux when using P coordinates in the ocean (OCEANICP). |
386 |
|
Note: It assumes you have set rho0=rhoConst=density of fresh water. |
387 |
|
|
388 |
|
checkpoint46g_post |
389 |
|
o Include a new diagnostic variable phiHydLow for the ocean model |
390 |
|
- in z-coordinates, it is the bottom pressure anomaly |
391 |
|
- in p-coordinates, it is the sea surface elevation |
392 |
|
- in both cases, these variable have global drift, reflecting the mass |
393 |
|
drift in z-coordinates and the volume drift in p-coordinates |
394 |
|
- included time averaging for phiHydLow, be aware of the drift! |
395 |
|
o depth-dependent computation of Bo_surf for pressure coordinates |
396 |
|
in the ocean (buoyancyRelation='OCEANICP') |
397 |
|
- requires a new routine (FIND_RHO_SCALAR) to compute density with only |
398 |
|
Theta, Salinity, and Pressure in the parameter list. This routine is |
399 |
|
presently contained in find_rho.F. This routine does not give the |
400 |
|
correct density for 'POLY3', which would be a z-dependent reference |
401 |
|
density. |
402 |
|
o cleaned up find_rho |
403 |
|
- removed obsolete 'eqn' from the parameter list. |
404 |
|
o added two new verification experiments: gop and goz |
405 |
|
(4x4 degree global ocean, 15 layers in pressure and height coordinates) |
406 |
|
checkpoint46g_pre |
407 |
|
|
408 |
|
checkpoint46f_post |
409 |
|
o Enable tangent linear (forward mode) gradient checks: |
410 |
|
- extended active file handling to g_... files |
411 |
|
- added TANGENT_SIMULATION to theSimulationMode |
412 |
|
- extended grdchk package accordingly |
413 |
|
o added tangent linear setup in verification/carbon/code_ftl |
414 |
|
o added adjoint setup in verification/front_relax/code_ad |
415 |
|
|
416 |
|
checkpoint46e_post |
417 |
|
o Added new equation of state -> MDJWF |
418 |
|
- EOS of McDougall et al., 2002, JAOT, submitted |
419 |
|
- caveat: the equation of state is only valid for a smaller (more |
420 |
|
realistic?) range of values than JMD95P/Z and UNESCO |
421 |
|
- added masks to the calculation of pressure in store_pressure |
422 |
|
- added more check values for density in check_eos (ini_eos.F), some of |
423 |
|
the old check values are out of the range of the MDJWF-eos, so don't |
424 |
|
expect perfect matches for those |
425 |
|
checkpoint46e_pre |
426 |
|
|
427 |
|
checkpoint46d_post |
428 |
|
o fixed store_pressure to work with both buoyancy relation = 'OCEANIC' and |
429 |
|
'OCEANICP', also initialised field pressure correctly in ini_eos in the |
430 |
|
case of pressure coordinates. eosType='JMD95Z' in |
431 |
|
combination with buoyancyRelation='OCEANICP' now causes an error. |
432 |
|
o Changed p = pressure(i,j,k,bi,bj) to p = pressure(i,j,kRef,bi,bj) |
433 |
|
in find_alpha/beta. |
434 |
|
checkpoint46d_pre |
435 |
|
|
436 |
|
o Changed p = pressure(i,j,k,bi,bj) to p = pressure(i,j,kRef,bi,bj) |
437 |
|
so that JMD95Z and JMD95P give approptiate static stability in find_rho. |
438 |
|
|
439 |
|
checkpoint46c_post |
440 |
|
o Changes necessary for ocean in p-coordinates |
441 |
|
- Added new buoyancy relation = 'OCEANICP' |
442 |
|
- Added new parameters = gravitySign (this used to be contained inside |
443 |
|
the factor dRdZ which I added when we first switched to R coordinates). |
444 |
|
X GM/Redi is not compatible (yet) |
445 |
|
X bottom drag and no-slip need to be debugged. |
446 |
|
checkpoint46c_pre |
447 |
|
|
448 |
|
checkpoint46b_post |
449 |
|
o Added new equation of state -> JMD95Z and JMD95P |
450 |
|
- EOS of Jackett and McDougall, 1995, JAOT |
451 |
|
- moved all EOS parameters into EOS.h |
452 |
|
- new routines ini_eos.F, store_pressure.F |
453 |
|
o Added UNESCO EOS, but not recommended because it requires |
454 |
|
in-situ temperature (see JMD95) |
455 |
|
o Modified formatting for knudsen2.f in utils/knudsen2 and added |
456 |
|
unesco.f to be used with POLY3 |
457 |
|
checkpoint46b_pre |
458 |
|
|
459 |
|
checkpoint46a_post |
460 |
|
o Added (atmospheric) pressure loading |
461 |
|
- new field in FFIELDS.h, etc... |
462 |
|
- new cpp flag ATMOSPHERIC_LOADING |
463 |
|
o Changed hFacC to _hFacC in calc_phi_hyd.F |
464 |
|
o Added SHORTWAVE_HEATING to some files for consistency |
465 |
|
checkpoint46a_pre |
466 |
|
|
467 |
|
checkpoint46 |
468 |
|
further merges from release1_p5 |
469 |
|
o new ctrl package |
470 |
|
- adopted from ECCO environment to enable optimization |
471 |
|
- added Eliassen Palm fluxes to controls |
472 |
|
o added Eliassen Palm flux controls to gradient check package |
473 |
|
o cost package |
474 |
|
- Compatible with new ctrl package |
475 |
|
- added Eliassen Palm cost hooks |
476 |
|
- modif's of existing cost functions |
477 |
|
o Adjoint-related bug fixes in kpp: |
478 |
|
- kpp_calc: sore of kpphbl avoids recomputation/call to S/R kppmix |
479 |
|
- kpp_routines: store of Rib avoids partial recomputation bug of TAF. |
480 |
|
o autodiff package |
481 |
|
- flow directives: |
482 |
|
+ new for S/R do_the_model_io |
483 |
|
+ enhanced for S/R checkpoint |
484 |
|
+ new gmredi.flow |
485 |
|
- Introduced CPP option ALLOW_AUTODIFF_MONITOR to |
486 |
|
disable adcommon.h/g_common.h by default. |
487 |
|
- fixed problem for adjoint of global_max |
488 |
|
o modified verification/carbon/ |
489 |
|
o New setup for adjoint of global_ocean |
490 |
|
o added hooks for Eliassen Palm fluxes (dynamics.F, ini_fields.F) |
491 |
|
o cleaned TAF keys iikey, idkey (dynamics.F, thermodynamics.F) |
492 |
|
o incorporated hooks for sponge layer code (external_forcing.F) |
493 |
|
|
494 |
|
checkpoint45d_post |
495 |
|
o import 2 fixes from release1_p5 (CG2D.h & packages_readparms.F) |
496 |
|
o use recip_dx*,recip_dy* instead of /dx*,/dy* in orlanski_E,W,N,S |
497 |
|
(affects plume_on_slope "cg2d" output) |
498 |
|
o add new parameter deltaTfreesurf for free-surface time stepping |
499 |
|
o exchange gT,gS when using staggerTimeStep & GM & Oly<4 |
500 |
|
o NONLIN_FRSURF: rescale gNm1 to get a better conservation with A-B |
501 |
|
o change phiMin in exp1 (to agree with documentation) |
502 |
|
o add new flags: |
503 |
|
- T,S forcing inside/outside Adams-Bashforth |
504 |
|
- turn off temp,salt advection and/or forcing |
505 |
|
- for each tracer, define internal flag for multiDimAdvection & A-B |
506 |
|
o monitor: change definition of KE to check conservation of Energy |
507 |
|
|
508 |
|
checkpoint45c_post |
509 |
|
o Removed f90 comments ("!") |
510 |
|
o Modified initialisations to enable exf package for MITgcm |
511 |
|
(without invoking ECCO_PACKAGE). |
512 |
|
o modifications to gradient check package (Martin Losch) |
513 |
|
- enable centered differences |
514 |
|
- modified format of standard output |
515 |
|
|
516 |
|
checkpoint45b_post |
517 |
|
o cleaned exchange calls in cg2d |
518 |
|
o Included CPP option ALLOW_AUTODIFF_MONITOR in forward_step |
519 |
|
o included CPP option SINGLE_LAYER_MODE in thermodynamics |
520 |
|
to configure barotropic setup (Martin Losch) |
521 |
|
o moved some initialisations within bi,bj loop in dynamics |
522 |
|
(TAF flow dependency) |
523 |
|
o in initialise_varia, moved call packages_init_variables |
524 |
|
before convective_adjustment_init |
525 |
|
(corresponding adjustment of TAF tape initialisation). |
526 |
|
o in calc_diffusivity/calc_viscosity extended domain to full overlap. |
527 |
|
|
528 |
|
checkpoint45a_post |
529 |
|
o compute Rho over the whole domain (extend iMin,jMin indices) |
530 |
|
o specific exchange for X-slice domain (case Ny=1) |
531 |
|
o argument futureIter of S/R obcs_calc missing in exp4 & internal_wave /code |
532 |
|
o solve_for_pressure : set cg2d_x to zero where OBCS are applied |
533 |
|
|
534 |
|
checkpoint44h_post = checkpoint45 |
535 |
|
o Fix to restore differentiability: |
536 |
|
place at which packages_init_variables is called in |
537 |
|
initialise_varia is crucial for reverse control flow. |
538 |
|
o modifications in GMRedi to enable stable adjoint |
539 |
|
(corresponding modif's in thermodynamics, dynamics) |
540 |
|
o added missing hook for sponge layer code in external_forcing |
541 |
|
o modified test cost functions |
542 |
|
o storing in gad_advection (plus removal of write(0,*)! |
543 |
|
o missing headers TR1.h added in convective_adjustment routines |
544 |
|
o errorMessageUnit set non-equal zero in eeboot |
545 |
|
(conflict on some platforms, e.g. IBM SP3) |
546 |
|
o modified carbon verif. |
547 |
|
|
548 |
|
checkpoint44h_pre |
549 |
|
o vertical grid option: allow to put the Interface at the middle between |
550 |
|
2 cell-centers ; replace delZ in pkg/kpp by drF. |
551 |
|
o GM Advective form: Tracers are advected using the residual transport (= |
552 |
|
Euler+GM-bolus); set param GM_AdvSeparate=T to return to previous form. |
553 |
|
|
554 |
|
checkpoint44g_post |
555 |
|
o fix surface correction term in multiDimAdvection (affects plume_on_slope |
556 |
|
results) ; ifdef missing in thermodynamics.F |
557 |
|
|
558 |
|
checkpoint44f_pre,checkpoint44f_post |
559 |
|
o added PTRACERS package |
560 |
|
This allows an arbitrary number of passive tracers to be integrated |
561 |
|
forward simultaneously with the dynamicaly model. |
562 |
|
+ Implemented so far: |
563 |
|
- basic forward algorithm (time-stepping, advection, diffusion, convection) |
564 |
|
- I/O and checkpointing |
565 |
|
- GM/Redi *but* using the GM/Redi coefficient of Salt |
566 |
|
+ Not implemented so far: |
567 |
|
- KPP |
568 |
|
- OBCS |
569 |
|
+ No specific example supplied (yet) but global_ocean.90x40x15 has the |
570 |
|
necessary data.ptracer file. Simply use -enable=ptracers and uncomment |
571 |
|
line in data.pkg. |
572 |
|
+ This package is disabled by default since it increases storage. |
573 |
|
|
574 |
|
|
575 |
|
o testscript: added -cleanup option |
576 |
|
o Shap_filt: a) new shap_filt S/R to use no-slip BC with S2 filter |
577 |
|
b) enable to filter 2D fields. |
578 |
|
|
579 |
|
checkpoint44e_pre,post |
580 |
|
o re-wrote convective adjustment to use pre-calculated weights |
581 |
|
Affects: model/src/convective_adjustment.F, convective_adjustment_ini.F |
582 |
|
Adds: model/src/convective_weights.F, convectively_mixtracer.F |
583 |
|
Original calls to convect() still in place. |
584 |
|
|
585 |
|
chkpt44d_pre,post |
586 |
|
o added missing EXCLUDE_MONITOR flags |
587 |
|
o changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi |
588 |
|
(incompatible typ in MIN/MAX expressions caused problems |
589 |
|
on IBM SP3) |
590 |
|
o in genmake added variable MAKEDEPEND |
591 |
|
plus resetting for case SunOS |
592 |
|
o added timer_stats.c routine for IBM SP3 |
593 |
|
o removed variables in dynamics |
594 |
|
!!! I forgot to create tag chkpt44d_pre !!! |
595 |
|
!!! But chkpt44d_pre = chkpt44c_post !!! |
596 |
|
|
597 |
|
o real fresh water flux implemented with non-linear free-surface. |
598 |
|
|
599 |
|
chkpt44c_pre,post |
600 |
|
o few fix (mask in shap_s2, EmPmR in external_field_load, |
601 |
|
USE_NATURAL_BCS in solve_for_P); |
602 |
|
o add arguments myIter & myTime to S/R obcs_calc & solve_for_P |
603 |
|
|
604 |
|
checkpoint44b_pre/_post |
605 |
|
o merge of relevant stuff from the ecco-branch: |
606 |
|
- genmake: removed $S64 overwrite for case SunOS |
607 |
|
- pkg/exf: update and corrections for field swapping and obcs |
608 |
|
- pkg/ecco: parameter lists for the_model_main, the_main_loop |
609 |
|
harmonized between ECCO and MITgcm |
610 |
|
- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice |
611 |
|
updated checkpointing_lev... lists for obcs |
612 |
|
- model/src: minor changes in forward_step, plot_field |
613 |
|
added directive for divided adjoint in the_main_loop |
614 |
|
- pkg/mdsio: added mdsio_gl_slice |
615 |
|
|
616 |
|
o check parameters & config (chkpt44a_pre,post) |
617 |
|
o OBC and NonLin_FrSurf. |
618 |
|
|
619 |
|
checkpoint44 |
620 |
|
o fix bug in mom_vi_del2uv |
621 |
|
o select when filters are applied ; add options to zonal_filter (data.zonfilt) |
622 |
|
o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection) |
623 |
|
o update AIM experiments (NCEP input files) |
624 |
|
o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf) |
625 |
|
o added some stuff for AD |
626 |
|
|
627 |
|
checkpoint43 |
628 |
|
o added two new advection tests |
629 |
|
o added global 4x4 degree ocean test |
630 |
|
o added test of H&S94 with free surface on cube |
631 |
|
o some final mods for gradient check, adjoint,... |
632 |
|
|
633 |
|
checkpoint42 |
634 |
|
Fixed AD-related problems: |
635 |
|
o Store directives up-to-date with re-arranged Adams-Bashforth |
636 |
|
(mainly thermodynamics.F) |
637 |
|
o New store directives for multi-dim. advection schemes |
638 |
|
* new CPP flag ALLOW_MULTI_DIM_ADVECTION |
639 |
|
* new common block and key passkey |
640 |
|
(mainly gad_advection.F) |
641 |
|
o Modified store directives for split of dynamics/thermodynamics |
642 |
|
for the case ALLOW_KPP |
643 |
|
o Cleaned argument list for timestep_tracer.F |
644 |
|
|
645 |
|
checkpoint41 |
646 |
|
o re-formatted/added comments in prologues of key subroutines |
647 |
|
to work with protex |
648 |
|
|
649 |
|
checkpoint40 |
650 |
|
o moved calc_gs, calc_gt and calc_tr1 back to model/src |
651 |
|
o added FLT (floats) package from Arne along with demo. experiment |
652 |
|
o re-arranged Adams-Bashforth scheme for tracers to allow easier |
653 |
|
implementation of forward-in-time forcing terms |
654 |
|
o more mods for non-linear free-surface including new variable |
655 |
|
o modified multi-dim method to work on cube |
656 |
|
o bug fix in KPP (from DM) |
657 |
|
|
658 |
|
checkpoint40pre9 |
659 |
|
o added DST advection schemes |
660 |
|
o fix MPI bug on SGI's |
661 |
|
o modifications for non-linear free-surface |
662 |
|
o fixed conditionals for fixed flow/passive tracer only mode |
663 |
|
o added tension/strain form of stress tensor |
664 |
|
o changes to commenting of arguments for TAF/TAMC |
665 |
|
o added/updated many matlab scripts |
666 |
|
o added multi-dimensional advection method for tracers |
667 |
|
|
668 |
|
checkpoint40pre8 |
669 |
|
o new package rw/ |
670 |
|
Added method for dumping intermediate local arrays: |
671 |
|
mdsio_writetile - same as mdsio_writefield except works from inside |
672 |
|
bi,bj loop |
673 |
|
mdsio_writelocal - same as mdsio_writetile except works for local |
674 |
|
arrays |
675 |
|
write_local_r? - higher-level wrapper for mdsio_writelocal |
676 |
|
Controlled by diagFreq. Defaults to zero (ie. no dumps) |
677 |
|
Example given at end of mom_vecinv.F that dumps some local arrays. |
678 |
|
o replaced calc_mom_rhs.F by mom_fluxform.F/mom_vecinc.F to |
679 |
|
control flux-form versus vector invariant code. |
680 |
|
Switch is runtime flag vectorInvariantMomentum (defaults to false) |
681 |
|
or genmake -DISABLE ... |
682 |
|
o TAMC-related update to cope with mom_fluxform.F/mom_vecinc.F |
683 |
|
(additional storing is now needed for case vecinv; |
684 |
|
currently nothing implemented to switch this storing off |
685 |
|
in case fluxform is used since no CPP flag available). |
686 |
|
|
687 |
|
checkpoint40pre7 |
688 |
|
o bug fix in dynamics.F |
689 |
|
calc_viscosity called before k=1,Nr loop. |
690 |
|
o added some #ifdef's ALLOW_PASSIVE_TRACER |
691 |
|
o cleaned initialisations in ctrl_map_ini |
692 |
|
related to TAF |
693 |
|
|
694 |
|
checkpoint40pre6 |
695 |
|
o split dynamics into thermodynamics & dynamics |
696 |
|
o corresponding split of calc_diffusivity into |
697 |
|
calc_diffusivity, calc_viscosity |
698 |
|
(kpp_calc_diff, kpp_calc_visc). |
699 |
|
o Added diffkr, kapgm to control variables |
700 |
|
o bug fix in gmredi_slope_limit for ldd97 |
701 |
|
|
702 |
|
checkpoint40pre5 |
703 |
|
o proper initialization of Adams-Bashforth time stepping |
704 |
|
+ uses forward step for very first step of model (iter=0) |
705 |
|
o re-generated *all* output since almost all output is modified by this |
706 |
|
change (sorry but we've been putting this one off for about 2 years) |
707 |
|
+ natl_box, aim.5l_Equatorial_Channel and aim.5l_zon-ave were |
708 |
|
*not* regenerated since they are already out of date and I don't |
709 |
|
want to create the impression that they are suddenly working. |
710 |
|
o removed KAP stuff for DEC's |
711 |
|
o modified/added many .cvsignore files in */code and */input |
712 |
|
o added new expt "solid-body.cs-32x32x1" |
713 |
|
+ this uses an alternative form of ini_curvilinear_grid.F which |
714 |
|
is not necessarily any better than the current one... |
715 |
|
|
716 |
|
checkpoint40pre4 |
717 |
|
o added re-initialisations of utrans,vtrans,rtrans in |
718 |
|
calc_common_factors which are crucial for TAF. |
719 |
|
o extended iMin,jMin range for calc_common_factors, |
720 |
|
calc_diffusivity |
721 |
|
o added option ALLOW_PASSIVE_TRACER |
722 |
|
o a few minor updates and fixes |
723 |
|
|
724 |
|
checkpoint40pre3 |
725 |
|
o created calc_gtr1.F for gad package |
726 |
|
o split the_main_loop and re-introduced forward_step |
727 |
|
o some recomputations of nIter0 for TAMC |
728 |
|
|
729 |
|
checkpoint40pre2 |
730 |
|
o Updated to latest branch of AJA, JMC |
731 |
|
o Added gradient check package |
732 |
|
o Added routines for passive tracer handling |
733 |
|
o Added carbon sequestration sensitivity experiment |
734 |
|
|
735 |
|
checkpoint39 |
736 |
|
o Modifications and fixes to support TAMC |
737 |
|
(mainly missing or wrong directives) |
738 |
|
o Corrected common blocks when fooling TAMC to produce adjoint I/O |
739 |
|
in addummy_in_stepping |
740 |
|
o Updated verification/vero/ (bug fixes in code/, correct pickups in input/) |
741 |
|
o Enabled "sliced" (xz-,yz-) exchanges, needed for obcs. |
742 |
|
o Included following packages: |
743 |
|
cal: calendar |
744 |
|
exf: external forcing |
745 |
|
ecco: essential routines to control use of cal, exf |
746 |
|
(NB: this is not the full ECCO environment) |
747 |
|
o disabled some packages by default in genmake |
748 |
|
|
749 |
|
checkpoint38 |
750 |
|
o see notes_c37_adj.txt |
751 |
|
o corrected wrong layer index in external_forcing_t |
752 |
|
o replaced the_main_loop/forward_step by the_main_loop |
753 |
|
o removed forceoutput from write_state |
754 |
|
(replaced criteria for initial/final state) |
755 |
|
o added runtime flag for pre-C35 pickups: usePickupBeforeC35 |
756 |
|
|
757 |
|
checkpoint37 |
758 |
|
o mdsio.F routine split and packaged in pkg/mdsio |
759 |
|
(mdsio.F and mdsio_gl.F still exist in eesupp/src but are not |
760 |
|
used unless genmake -disable=mdsio) |
761 |
|
o allow a more precise surface-geopotential gradient for the atmosphere |
762 |
|
taking into account the change in space of Alpha (=1/rho) at the surface. |
763 |
|
o variable "etaN" (replace cg2d_x) is the surface R-anomaly [r unit] |
764 |
|
(ocean: sea surface height [m] / atmos: surface pressure anomaly [Pa]) |
765 |
|
o Change units: Phi_Hydrostatic (=phiHyd), Phi_Surface(=cg2d_x) and |
766 |
|
Phi_NonHydrostatic (=cg3d_x), all have now the dimension of a potential |
767 |
|
[m2/s2] (pressure/rhoConst in the ocean ; Geo-Potential in the atmosphere). |
768 |
|
o Time-Average diagnostics defined as a pseudo package "timeave". |
769 |
|
o pickup files : old pickup (before c35) did not work with new code (c35 |
770 |
|
and after) unless activating 2 commented lines in initialise-varia. |
771 |
|
o Non-Hydrostatic pickup file Pb fixed. |
772 |
|
o bug with Rigid-lid version (since c35) fixed. |
773 |
|
|
774 |
|
checkpoint36 |
775 |
|
o implement Crank-Nickelson barotropic time-stepping |
776 |
|
o recover Time-Average diagnostics |
777 |
|
o fix Pb in checkpoint (PR#19) |
778 |
|
o AIM become a standard package ; clean unused CPP_kees |
779 |
|
|
780 |
|
checkpoint35 |
781 |
|
o subtantial rewrite of dynamics.f |
782 |
|
o allows staggered time-stepping |
783 |
|
o packaged obcs, aim (Atmospheric Physics), zonal_filt, shap_filt |
784 |
|
o added bottom drag (linear + quadratic) |
785 |
|
|
786 |
|
checkpoint34 |
787 |
|
o Modified exchange routines for correct reverse simulation. |
788 |
|
o Added verification output to comply with bug fix in impldiff.F |
789 |
|
as of c33 (exp2, natl_box). |
790 |
|
o Corrected store directives in dynamics.F |
791 |
|
o Corrected array boundaries in impldiff.F |
792 |
|
o Corrected array dimensions in gmredi. |
793 |
|
Added temporary scalars to avoid storage by TAMC (gmredi, kpp). |
794 |
|
o Added routine GLOBAL_SUM_INT to global_sum.F |
795 |
|
o Added mdsio_gl.F for ECCO purposes. |
796 |
|
|
797 |
|
checkpoint33 |
798 |
|
o Fixed bug in lower BC in impldiff.F |
799 |
|
o Fixed confusion about units of forcing arrays in FFIELDS.h |
800 |
|
namely Fu,Fv,Qnet,Qsw,EmPmR: |
801 |
|
- Removed verification/natl_box/code/external_fields_scale.F |
802 |
|
(did not differ from that in model/src) |
803 |
|
- Changed units of fu,fv,Qnet,Qsw,EmPmR back to proper units |
804 |
|
(see FFIELDS.h for description) |
805 |
|
- Scale fu,fv,Qnet,Qsw,EmPmR when used in external_forcing_surf.F, |
806 |
|
kpp_calc.F and kpp_transport_t.F |
807 |
|
- Removed model/src/external_fields_scale.F and calls to it |
808 |
|
- verification/natl_box uses flux data with "atmospheric" sign so |
809 |
|
a special version of external_fields_load.F is used to |
810 |
|
change the data as it's read in. This way, the arrays |
811 |
|
have the right units and signs at all times tha a user could |
812 |
|
possibly use them. |
813 |
|
o Corrected genmake to delete a temporary file during configuration |
814 |
|
|
815 |
|
checkpoint32 |
816 |
|
o Scaling of forcing fields moved from external_forcing.F to |
817 |
|
external_fields_scale.F, called directly after loading fields. |
818 |
|
o Surface relaxation terms added to surface tendency fields in |
819 |
|
extra subroutine. |
820 |
|
o impldiff.F changed to avoid storing by TAMC of huge intermediate |
821 |
|
fields. |
822 |
|
o Changes in GMRedi to comply with packaging structure. |
823 |
|
o Modifications and bug fixes in KPP package. |
824 |
|
o Verification experiment for KPP added (verification/nat_box/) |
825 |
|
|
826 |
|
checkpoint31 |
827 |
|
o Packages interface brought in line with defined standard |
828 |
|
-> new routines packages_...F |
829 |
|
-> changes in initialise_fixed.F, initialise_varia.F |
830 |
|
-> enables initialisation interface for ECCO package |
831 |
|
o Rescaling of external forcing fields immediately after read |
832 |
|
(removed from external_forcing.F) |
833 |
|
-> new: surface_fields_scale.F |
834 |
|
-> affects ini_foorcing.F, external_fields_load.F |
835 |
|
o Computation of surface tendencies before tendency updates. |
836 |
|
-> new: external_forcing_surf.F |
837 |
|
o Change of variable names useGMRedi, useKPP, useECCO |
838 |
|
o Further changes in dynamics.F, impldiff.F for TAMC |
839 |
|
o Tested for experiments 0, 2, 4. |
840 |
|
- not yet tested for GMRedi. |
841 |
|
- not yet tested for KPP. |
842 |
|
|
843 |
|
checkpoint30 |
844 |
|
o Updates for OBCs |
845 |
|
o New experiment for test OBCs (internal_wave) |
846 |
|
o New output.txt in verification/exp4/results/ |
847 |
|
o Updates for KPP: calculation of viscosity corrected, new variables |
848 |
|
kpp_dumpFreq and kpp_taveFreq |
849 |
|
o CPP'd calls to system routines for TARGET_CRAY_VECTOR (P.H.) |
850 |
|
and entry for T90 in genmake |
851 |
|
|
852 |
|
checkpoint29 |
853 |
|
o packaged KPP and GM/Redi |
854 |
|
|
855 |
|
checkpoint28 |
856 |
|
o Corrected initialization of hFacMin for difference vertical coordinates |
857 |
|
o Modified calculation of partial cell thickness to more robust algorithm |
858 |
|
o config_summary.F: replaced write_1D_... by write_0D_... |
859 |
|
read_write.F: added subroutines write_0D_... |
860 |
|
o routines calc_common_factors, calc_gs, calc_gt, calc_phi_hyd, find_rho: |
861 |
|
included some initialisations required for TAMC. |
862 |
|
o routine calc_isoslopes: modified sqrt computation to make it |
863 |
|
differentiable for zero argument. |
864 |
|
o routines dynamics, impldiff: |
865 |
|
included store directives and tape key computations required for TAMC. |
866 |
|
o ALL TAMC related changes are between ifdef ALLOW_AUTODIFF_TAMC |
867 |
|
|
868 |
|
checkpoint27 |
869 |
|
o fixed calc_isoslopes() to so that cancellation of terms in tensor |
870 |
|
formulation works properly with variable resolution. |
871 |
|
o restructured the calling tree between the_model_main() and dynamics() |
872 |
|
o split initialise() into initialise_fixed() and initialise_varia() |
873 |
|
o introduced initialization file pSurfInitFile for free surface (cg2d_x) |
874 |
|
in new routine ini_psurf() |
875 |
|
|
876 |
|
checkpoint26 |
877 |
|
o moved some #ifdef in optional routines to encompass everything |
878 |
|
except the argument declarations. This was using up some memory. |
879 |
|
o fixed macros like _ADT to work with both versions of Linux cpp |
880 |
|
o cleaned up some unused and uninitialized variables |
881 |
|
(helps when debugging with strict compile options) |
882 |
|
o split up CPP_EEOPTIONS.h into options and macros |
883 |
|
(macros are now in eesupp/inc/CPP_EEMACROS.h) |
884 |
|
o patch for 2 processor JAM mode |
885 |
|
|
886 |
|
checkpoint25 |
887 |
|
o updates for OBCs and NH |
888 |
|
o dramatically reduced memory usage |
889 |
|
o added "JAM" routines for use on Artic network |
890 |
|
o parameterization of convection by implicit vertical diffusion |
891 |
|
o added a diagnostic of convective index |
892 |
|
o moved call to calc_divg_hat() from dynamics() to solve_for_pressure() |
893 |
|
(this is was partly for OBCs and NH but also in anticipation of |
894 |
|
an explicit free-surface option) |
895 |
|
o initial state input files for U and V |
896 |
|
|
897 |
|
checkpoint24 |
898 |
|
o Removed some spurious "REAL"s |
899 |
|
o Updated KPP to latest version from JPL |
900 |
|
o Added a COS(latitude) in horizontal viscosity |
901 |
|
|
902 |
|
checkpoint23 |
903 |
|
o Added del^4 diffusion for salt and temperature |
904 |
|
o Multiple minor fixes (implicit none's, arguments to global_sum, etc.) |
905 |
|
|
906 |
|
checkpoint22 |
907 |
|
o Made many small changes: implicit none, format(i5), etc... |
908 |
|
o Introduced KPP mixing scheme (compiles and runs but *not* tested) |
909 |
|
|
910 |
|
checkpoint21 |
911 |
|
o Introduced new I/O package that supports direct-access records (mdsio.F) |
912 |
|
o Split-up mid-level I/O routines |
913 |
|
o Updated input data for experiments 0,1,2,4 and 5 |
914 |
|
o Finally removed the genmake.* scripts (everyone seems happy with genmake) |
915 |
|
|
916 |
|
checkpoint20 |
917 |
|
o Tidied up open-boundaries some more |
918 |
|
o Added non-hydrostatic code |
919 |
|
o Fixed some input data |
920 |
|
o Modified MPI start-up to work in "coupled" context. |
921 |
|
|
922 |
|
checkpoint19 |
923 |
|
o Tidied up directory structure for verification experiments. |
924 |
|
o Added new code for open boundaries. |
925 |
|
o Corrected advective terms near boundaries. |
926 |
|
o Added CPP flag for "old UV" geometry and corrected spherical geometry. |
927 |
|
o Implemented free-slip/no-slip BCs and del^4 dissipation. |
928 |
|
o Split default parameters out of ini_parms.F into set_defaults.F. |
929 |
|
|
930 |
|
checkpoint18 |
931 |
|
o Further changes for optional code generation with |
932 |
|
CPP - ugh! |
933 |
|
|
934 |
|
checkpoint17 |
935 |
|
o Beginning to incorporating modularity |
936 |
|
for supporting atmos. and ocean configs. |
937 |
|
o Small changes for TAMC complinace |
938 |
|
o New ultra simple test case. Barotropic box |
939 |
|
configuration "exp0". |
940 |
|
|
941 |
|
checkpoint16 |
942 |
|
o Minor changes to exchange routines to support |
943 |
|
accumulation in reverse mode. Adjoint of an |
944 |
|
assignment is an addition. |
945 |
|
o Changes to support compilation by TAMC (LR(1) |
946 |
|
syntax) and by g77 under Linux ( 72 character |
947 |
|
limit ). |
948 |
|
|
949 |
|
checkpoint15 |
950 |
|
Rewrote exchange routines to allow |
951 |
|
o General tile <-> tile connectivity. |
952 |
|
o TAMC reverse mode flag ( is this really needed? ) |
953 |
|
o Variable width overlap and exchange region widths. |
954 |
|
o Hooks for sharing data via DMA, Arctic, Memory Channel, |
955 |
|
shmput/shmget, VIA, SYSV shmem and every other cool |
956 |
|
communication method. |
957 |
|
|
958 |
|
checkpoint14 |
959 |
|
Consistent isomorphism chages made. These allow dynamical core |
960 |
|
to support both pressure and meters as a vertical coordinate. |
961 |
|
|
962 |
checkpoint13 |
checkpoint13 |
963 |
Release which corrects global_max problem and a couple |
Release which corrects global_max problem and a couple |
964 |
of KGM time-averaging diagnostic errors. Also contains |
of KGM time-averaging diagnostic errors. Also contains |