2 |
|
|
3 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
4 |
============================== |
============================== |
5 |
|
o thermodynamics sea-ice (thsice) is now tested with testreport. |
6 |
|
o test exp. advect_cs: use the standard cs32 grid ; update output. |
7 |
|
|
8 |
|
checkpoint52l_post |
9 |
|
o new land formulation: |
10 |
|
a) use ground enthalpy as prognostic variable to ensure exact |
11 |
|
energy conservation. |
12 |
|
b) account for water temperature and for latent heat of freezing |
13 |
|
in all processes (rain, run-off, ground storage) |
14 |
|
c) compute surface and ground temperature implicitly. |
15 |
|
o aim_v23 modification for new land model: |
16 |
|
a) Treat separately land / ocean / sea-ice surface fluxes |
17 |
|
to allow implicit computation of land & sea-ice surface temp. |
18 |
|
b) add snow precipitation. |
19 |
|
checkpoint52l_pre |
20 |
|
|
21 |
|
o fix problem (when 1 tile is empty) in min/max monitor. |
22 |
|
o fix bug in timeAve (u,vZetatave in common block) |
23 |
|
o no restoring terms under ice for pkg/seaice |
24 |
|
o moved SEAICE_DO_DIAGS to S/R do_the_model_io |
25 |
|
o bug fix for pkg/seaice pickups |
26 |
|
o change MNC call locations and add coordinate attributes |
27 |
|
o mask vorticity at the corner ; affects global_ocean.cs output |
28 |
|
o fix ini_curvilinear_grid ; test CS experiments with mpi |
29 |
|
o aim.5l_cs: modify sea-ice fraction input file ; update output |
30 |
|
o exf: Adding simple range check routine for exf fields after read |
31 |
|
|
32 |
|
checkpoint52k_post |
33 |
|
o removed top-level directory "diags" |
34 |
|
- we migrated these functions to pkg/timeave a long time ago |
35 |
|
o fixed bug introduced in pkg/monitor |
36 |
|
o accuracy ctrlprec = 32 insuffient for gradient checks using |
37 |
|
averaged fields (I/O via cost_averages) |
38 |
|
-> use ctrl.h in active_file*.F to control I/O precision. |
39 |
|
o paramter list of CALL ADTHE_MAIN_LOOP |
40 |
|
o added initial do_the_model_io to ecco |
41 |
|
o set all ...Freq to zero after cost_final |
42 |
|
taveFreq, dumpFreq, pChkptFreq |
43 |
|
o MAIN and ECCO differentiability restored |
44 |
|
|
45 |
|
checkpoint52j_post |
46 |
|
o fix nchklev in tamc.h for global_ocean... |
47 |
|
o Bringing flow and store directives up-to-date |
48 |
|
o Really weird thing! |
49 |
|
call do_the_model_io from the_main_loop with parameters |
50 |
|
starttime, niter0, instead of mytime, myiter, screws up the adjoint: |
51 |
|
TAF places a faulty re-call of initialise_varia |
52 |
|
after cost_final call which should not be there! |
53 |
|
checkpoint52j_pre |
54 |
|
|
55 |
|
o tweaked pkg/mdsio/mdsio_readfield.F to have more useful logic and |
56 |
|
error messages |
57 |
|
o fix errorMessageUnit problem. remove old version of mdsio from eesup/src |
58 |
|
o modified pkg/mdsio/mdsio_readfield.F -- commented out diskspace-eating |
59 |
|
debug output |
60 |
|
o modfied mdsio_writefield.F to handle non-global files under exch2 |
61 |
|
o update AIM Cubed-Sphere exp (aim.5l_cs): |
62 |
|
use land, p*, and Franco.M forcing fields with fractional land-sea mask. |
63 |
|
o update AIM Equatorial Channel exp: |
64 |
|
use standard aim_v23 pkg and change the SST fields to be more realistic. |
65 |
|
o globalFile now works with exch2 |
66 |
|
o merged mom_vi_calc_relvort3.F, mom_vi_del2uv.F and |
67 |
|
mon_vort3.F to make exch2 friendly with >1 tile per cube face |
68 |
|
o limit timeave output for hi-res integrations |
69 |
|
|
70 |
|
checkpoint52i_post |
71 |
|
o removed CPP_EEOPTIONS.h from verification/*/code |
72 |
|
o updated the tiling for global_ocean_pressure |
73 |
|
checkpoint52i_pre |
74 |
|
|
75 |
|
o update aim.5l_LatLon using the standard aim_v23 pkg (instead of |
76 |
|
the old pkg/aim). |
77 |
|
|
78 |
|
checkpoint52h_pre |
79 |
|
o shortened offending lines in exch2_send_rx?.template |
80 |
|
o modified W2_EXCH2_TOPOLOGY.h to reflect current topology generator |
81 |
|
o genmake2: add build & execute test for NetCDF code |
82 |
|
o modded aim.5l_cs and global_ocean.cs32x15 to use exch2, removed |
83 |
|
old grid files, moved CPP_EEMACROS.h to pkg/exch2 |
84 |
|
o added useSingleCPUIO flag to monitor.F and mon_out.F |
85 |
|
o added temporary hack for sea-ice dynamics on the cube: |
86 |
|
metric terms are ignored and it is assumed that |
87 |
|
there is no sea-ice on cube faces 1, 2, 4, and 5. |
88 |
|
|
89 |
|
checkpoint52f_post |
90 |
|
o added exch2 cube routines to pkg/exch2 |
91 |
|
o modified hs94.cs-32x32x5 to use it |
92 |
|
o added new grid files to hs94.cs-32x32x5 |
93 |
|
checkpoint52f_pre |
94 |
|
|
95 |
|
checkpoint52e_post |
96 |
|
o first attempt to solve vertical advection (momemtum & T,S) Implicitly |
97 |
|
for now, only implemented with Lax-Wendroff (tracer) and VectInv (mom) |
98 |
|
o step.1 : rewrite (as in MultiDimAdvec) explicit tracer stepping (gad_calc_rhs.F) |
99 |
|
to work with implicit vertical advection and AB ; |
100 |
|
o Implic. vert. advect. implemented with flux-limiter, c2, u3 and c4 scheme. |
101 |
|
o update output (gad_calc_rhs.F changes affect truncation error) of exp: |
102 |
|
front_relax, global_ocean .cs32x15 & _pressure, internal_wave, lab_sea, natl_box |
103 |
|
checkpoint52e_pre |
104 |
|
|
105 |
|
o fix bug in impldiff when Nr=1 or Nr=2. |
106 |
|
o change the albedo in pkg/thsice (as GISS model); update output_thsice.txt |
107 |
|
o little changes (fftpack, aim/phy_suflux ...) to pass the "checkbounds" test. |
108 |
|
o fix deltaTfreesurf in update_cg2d.F (left from c45d_post): affects 2 |
109 |
|
ocean exp. that use NLFS: global_ocean.cs32x15 & global_ocean_pressure |
110 |
|
o added exf_offset_atemp for Celsius to Kelvin conversion of atemp |
111 |
|
o eesupp/inc/EEPARAMS.h: MAX_NO_PROCS=1024 |
112 |
|
o pkg/cal/cal_toseconds.F fix for long (>60 years) integrations |
113 |
|
|
114 |
|
checkpoint52d_post |
115 |
|
o re-tiled many expts to allow comparison in multi-processor mode |
116 |
|
- updated output accordingly |
117 |
|
- changed hs94.128x64x5 to use intial T from file rather than use the |
118 |
|
random number generator |
119 |
|
o add infrastructure in model routines for fizhi and gridalt packages |
120 |
|
o change global_ocean.cs32x15 because of Pb with GM on CS-grid. |
121 |
|
o changes to permit hi-res, cubed-sphere, configuration |
122 |
|
- added useSingleCpuIO capability to mdsio_readfield.F and exf_interp.F |
123 |
|
- added "#undef ALLOW_USE_MPI" support to eesupp/src/scatter_2d.F |
124 |
|
- added pkg/exf/exf_set_uv.F for on-the-fly interpolation and rotation |
125 |
|
of surface winds for the cube |
126 |
|
(A verification experiment, based on global_ocean.cs32x15, but with |
127 |
|
pkg/seaice turned on and with on-the-fly interpolation from the NCEP |
128 |
|
Gaussian grid is described in MITgcm_contrib/high_res_cube/README_ice, |
129 |
|
complete with example surface forcing files and matlab scripts to look |
130 |
|
at the output and compare it with that of global_ocean.cs32x15.) |
131 |
|
o packages pickup: $PKG_write_pickup called from packages_write_pickup ; |
132 |
|
but call to $PKG_read_pickup remains in $PKG_ini_vars: change CD_code |
133 |
|
to conform to the common rule. |
134 |
|
o check-in the first version of the coupler + interfaces for multi-components |
135 |
|
set-up (Chris's version, adapted to work on cubed-sphere grid); use MPI. |
136 |
|
- imply modification in eesupp (MPI_COMM_MODEL < MPI_COMM_WORLD). |
137 |
|
- atmosphere: use pkg aim_v23 ; no sea-ice for now. |
138 |
|
- ocean and atmos. share the same horizontal grid (no interpolation). |
139 |
|
- exchanges between component and coupler is done in forward_step |
140 |
|
o new verification experiment, cpl_aim+ocn: |
141 |
|
coupled ocean - AIM atmosphere on cs32 grid. |
142 |
|
|
143 |
|
checkpoint52d_pre |
144 |
|
o surface flux time-av diagnostic modified for NLFS & RealFreshWater |
145 |
|
o add call to AIM pendant S/R in external_forcing & external_fields_load.F |
146 |
|
|
147 |
|
checkpoint52c_post |
148 |
|
o Fixing OPTIONS files for use of exf: |
149 |
|
- ALLOW_ECCO not needed |
150 |
|
- ECCO_CPPOPTIONS.h should not be included from |
151 |
|
EXF_OPTIONS.h/CAL_OPTIONS.h, but from CPP_OPTIONS.h |
152 |
|
as has been the case in the past |
153 |
|
- All cal/exf related options are currently set in |
154 |
|
single header file. Should remain so until we |
155 |
|
agree on a consistent new policy. |
156 |
|
o Removed all CPP options for cal package. |
157 |
|
cal has no more CPP options. |
158 |
|
o modified STOREs in GAD_ADVECTION |
159 |
|
o corrected key comp. for passkey |
160 |
|
|
161 |
|
checkpoint52b_post |
162 |
|
o new version: "thsice" of thermodynamic sea-ice pkg: |
163 |
|
- only 1 call from "forward_step"; conserve energy, fresh-water & salt. |
164 |
|
- modify fluxes but do not change theta directly; |
165 |
|
- light cleaning of bulk_force pkg (still needed with thsice). |
166 |
|
- add forcing fields + data files in global_ocean.cs32x15/inp_thsice |
167 |
|
+ output_thsice.txt to test thsice & bulk_force pkgs. |
168 |
|
o put back grid & coriolis monitor output. |
169 |
|
checkpoint52b_pre |
170 |
|
|
171 |
|
o call "do_the_model_io" at the beginning (=> dump initial state) |
172 |
|
o use rhoConstFresh to define convertEmP2rUnit (was done only in ocean-P) |
173 |
|
o sort out interplay between tamc.h and PTRACERS_OPTIONS.h |
174 |
|
(need info on NUMBER_OF_PTRACERS) |
175 |
|
o missing PTRACERS headers in some routines |
176 |
|
o default tamc.h in pkg/autodiff supposed to crash |
177 |
|
to ensure proper customization |
178 |
|
|
179 |
|
checkpoint52a_post |
180 |
|
o modifications to make FREEZE (_SURFACE) flux visible to pkg/kpp |
181 |
|
- moved surfaceTendencyTice from pkg/seaice to main code |
182 |
|
- subroutine FREEZE_SURFACE now limits only surface temperature |
183 |
|
and is called in FORWARD_STEP (if allowFreezing=.TRUE.) |
184 |
|
=> new output.txt for global_ocean.cs32x15 & global_with_exf |
185 |
|
- keep the old version of FREEZE for backward compatibility; |
186 |
|
global_ocean.90x40x15 left unchanged using useOldFreezing=.TRUE. |
187 |
|
- corresponding modifs for TAF directives |
188 |
|
o added surface flux output variables to TIMEAVE_STATVARS |
189 |
|
o time-averaged output for pkg/ptracers |
190 |
|
o fix problem with ECCO-related divided adjoint |
191 |
|
snapshot file was missing some ad-variables, |
192 |
|
but no warning issued by TAF |
193 |
|
|
194 |
|
checkpoint52a_pre |
195 |
|
o some bug fixes for #undef REAL4_IS_SLOW |
196 |
|
|
197 |
|
checkpoint52 = ecco_c52_e35 |
198 |
|
o after testing adjoints of checkpoint51u_post |
199 |
|
|
200 |
|
checkpoint51u_post |
201 |
|
o this is the post-merge tag of the ecco-branch |
202 |
|
(needs another clean checkout and re-testing) |
203 |
|
o various natl_box_adjoint configs and results |
204 |
|
but no input fields |
205 |
|
o obcs adjoint not yet merged! |
206 |
|
o adding ECCO global 1x1 and 2x2 degree configs |
207 |
|
o updated/extended some store directives for seaice |
208 |
|
o pkg/ecco now containes ecco-specific part of cost function |
209 |
|
o top level routines the_main_loop, forward_step |
210 |
|
supersede those in model/src/ |
211 |
|
previous input data.cost now in data.ecco |
212 |
|
(new namelist ecco_cost_nml) |
213 |
|
o in ctrl/ cleaned some cross-dependencies and updated CPP options |
214 |
|
|
215 |
|
checkpoint51t_post |
216 |
|
o this is the pre-merge tag of the ecco-branch |
217 |
|
|
218 |
|
checkpoint51s_post |
219 |
|
o cleanup: removed various obsolete #define-s |
220 |
|
o pkg/grdchk |
221 |
|
- renamed 'ph-grd 3' to 'grad-res' |
222 |
|
- merged from ecco-branch |
223 |
|
(remaining bug fixes for obcs gradient checks) |
224 |
|
- additional high-precision output for testreport |
225 |
|
(grep for 'precision_grdchk_result') |
226 |
|
|
227 |
|
checkpoint51r_post |
228 |
|
o cleaned up or removed CPP_OPTIONS.h files |
229 |
|
o updated results for some of the tests to reflect the new |
230 |
|
optfiles (-ieee: -O0 instead of -O3) |
231 |
|
|
232 |
|
checkpoint51q_post |
233 |
|
o cd_code: |
234 |
|
- moved cd_scheme.F -> cd_code_scheme.F |
235 |
|
- separate read_checkpoint from cd_code_ini_vars.F |
236 |
|
- separated cd_code part from write_checkpoint |
237 |
|
- updated AD_SOURCE, generated .flow |
238 |
|
- added CD_CODE_VARS.h to the_main_loop |
239 |
|
- Moving cd_code specific store dir.s to pkg/cd_code |
240 |
|
o ctrl package totally restructured |
241 |
|
- pack/unpack now optional and decoupled from |
242 |
|
xx_/adxx_ I/O |
243 |
|
- ctrl_pack/unpack cleaned |
244 |
|
(new routines ctrl_init_ctrlvar.F, pkg/ctrl/ctrl_init_wet.F) |
245 |
|
- confined inclusion of AD_CONFIG.h to where necessary. |
246 |
|
o genmake2: changed AD dependencies from SRCFILES to AD_FILES |
247 |
|
|
248 |
|
checkpoint51p_post |
249 |
o create initial cd_code package |
o create initial cd_code package |
250 |
- WARNING: the initialization of fields within packages |
- WARNING: the initialization of fields within packages |
251 |
is broken because INI_FIELDS (where READ_CHECKPOINT is |
is broken because INI_FIELDS (where READ_CHECKPOINT is |