3 |
Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
4 |
============================== |
============================== |
5 |
|
|
6 |
|
checkpoint51u_post |
7 |
|
o this is the post-merge tag of the ecco-branch |
8 |
|
(needs another clean checkout and re-testing) |
9 |
|
o various natl_box_adjoint configs and results |
10 |
|
but no input fields |
11 |
|
o obcs adjoint not yet merged! |
12 |
|
o adding ECCO global 1x1 and 2x2 degree configs |
13 |
|
o updated/extended some store directives for seaice |
14 |
|
o pkg/ecco now containes ecco-specific part of cost function |
15 |
|
o top level routines the_main_loop, forward_step |
16 |
|
supersede those in model/src/ |
17 |
|
previous input data.cost now in data.ecco |
18 |
|
(new namelist ecco_cost_nml) |
19 |
|
o in ctrl/ cleaned some cross-dependencies and updated CPP options |
20 |
|
|
21 |
|
checkpoint51t_post |
22 |
|
o this is the pre-merge tag of the ecco-branch |
23 |
|
|
24 |
|
checkpoint51s_post |
25 |
|
o cleanup: removed various obsolete #define-s |
26 |
|
o pkg/grdchk |
27 |
|
- renamed 'ph-grd 3' to 'grad-res' |
28 |
|
- merged from ecco-branch |
29 |
|
(remaining bug fixes for obcs gradient checks) |
30 |
|
- additional high-precision output for testreport |
31 |
|
(grep for 'precision_grdchk_result') |
32 |
|
|
33 |
|
checkpoint51r_post |
34 |
|
o cleaned up or removed CPP_OPTIONS.h files |
35 |
|
o updated results for some of the tests to reflect the new |
36 |
|
optfiles (-ieee: -O0 instead of -O3) |
37 |
|
|
38 |
|
checkpoint51q_post |
39 |
|
o cd_code: |
40 |
|
- moved cd_scheme.F -> cd_code_scheme.F |
41 |
|
- separate read_checkpoint from cd_code_ini_vars.F |
42 |
|
- separated cd_code part from write_checkpoint |
43 |
|
- updated AD_SOURCE, generated .flow |
44 |
|
- added CD_CODE_VARS.h to the_main_loop |
45 |
|
- Moving cd_code specific store dir.s to pkg/cd_code |
46 |
|
o ctrl package totally restructured |
47 |
|
- pack/unpack now optional and decoupled from |
48 |
|
xx_/adxx_ I/O |
49 |
|
- ctrl_pack/unpack cleaned |
50 |
|
(new routines ctrl_init_ctrlvar.F, pkg/ctrl/ctrl_init_wet.F) |
51 |
|
- confined inclusion of AD_CONFIG.h to where necessary. |
52 |
|
o genmake2: changed AD dependencies from SRCFILES to AD_FILES |
53 |
|
|
54 |
|
checkpoint51p_post |
55 |
|
o create initial cd_code package |
56 |
|
- WARNING: the initialization of fields within packages |
57 |
|
is broken because INI_FIELDS (where READ_CHECKPOINT is |
58 |
|
called) is called *before* PACKAGES_INIT_VARIABLES. |
59 |
|
This seems to be backwards since |
60 |
|
1) its important to initially zero the entire field including |
61 |
|
the "halo" region |
62 |
|
2) zeroing needs to be done *before* reading pickup info |
63 |
|
and the pickup call might or might not happen in any |
64 |
|
particular run |
65 |
|
- this needs an overhaul for R2 |
66 |
|
o cleanup verification/*/code/GMREDI_OPTIONS.h |
67 |
|
o cleanup testreport |
68 |
|
|
69 |
|
checkpoint51o_post |
70 |
|
o bringing AD-related verif's up to date with genmake2 |
71 |
|
- carbon/ |
72 |
|
- global_ocean.90x40x15/ |
73 |
|
- hs.94.1x64x5/ |
74 |
|
- (front_relax/ ) |
75 |
|
o (more) consistent directory structure for AD-related verif.'s |
76 |
|
o cleaning ALLOW_GRADIENT_CHECK -> ALLOW_GRDCHK |
77 |
|
o cleaning some ALLOW_TANGENTLINEAR_RUN -> ALLOW_AUTODIFF |
78 |
|
o bug fix in find_alpha.F for MDJWF: |
79 |
|
- modif. to alpha = 1/D*( dN/dT - rho*dD/Dt) to account for |
80 |
|
change rho -> rho-rhoConst |
81 |
|
- replace call find_rho to find_rhonum |
82 |
|
o initialisation of rFlx extended to full array (required by TAF) |
83 |
|
and shifted to thermodynamics |
84 |
|
o removed PTRACERS.h in ptracers routine |
85 |
|
o added surfacetendencyPtr to S/R parameter list pracers_forcing |
86 |
|
o Correcting initialisations for fVerU, fVerV. |
87 |
|
o helping TAF to recognize dependency on kUp for |
88 |
|
fVerU, fVerV |
89 |
|
o Replacing delZ by delR in pkg/ctrl/ |
90 |
|
checkpoint51o_pre |
91 |
|
|
92 |
|
o undid all of cp51 pending some cleanups and discussion |
93 |
|
o added the [#include "AD_CONFIG.h"] statement to all files that need |
94 |
|
it for adjoint/tl #defines |
95 |
|
o re-worked the build logic in genmake2 to support AD_CONFIG.h |
96 |
|
o removed tools/genmake since it no longer works |
97 |
|
|
98 |
|
checkpoint51n_post |
99 |
|
o modifications to make FREEZE flux visible to pkg/kpp |
100 |
|
- moved surfaceTendencyTice from pkg/seaice to main code |
101 |
|
- FREEZE & EXTERNAL_FORCING_SURF moved to FORWARD_STEP |
102 |
|
- subroutine FREEZE now limits only surface temperature |
103 |
|
(this means new output.txt for global_ocean.90x40x15, |
104 |
|
global_ocean.cs32x15, and global_with_exf) |
105 |
|
o added surface flux output variables to TIMEAVE_STATVARS |
106 |
|
|
107 |
|
checkpoint51n_pre |
108 |
|
o added "#undef ALLOW_USE_MPI" support to eesupp/src/gather_2d.F |
109 |
|
o added [#include "AD_CONFIG.h"] to all files that use the following |
110 |
|
defines: |
111 |
|
- ALLOW_ADJOINT_RUN |
112 |
|
- ALLOW_TANGENTLINEAR_RUN |
113 |
|
- ALLOW_ECCO_OPTIMIZATION |
114 |
|
|
115 |
|
checkpoint51m_post |
116 |
|
o incorporating changes to get TAMC/TAF working in genmake2 |
117 |
|
- added new TAMC/TAF targets to the Makefile |
118 |
|
- various cleanups related to package handling |
119 |
|
- these changes should have no impact on the forward model |
120 |
|
|
121 |
|
checkpoint51l_post |
122 |
|
o changes to pkg/cal and pkg/exf that allow and speed-up long integrations |
123 |
|
- faster algorithm for cal_addtime.F |
124 |
|
- higher precision arithmetic, where needed |
125 |
|
- pkg/exf *startdate variables changed from calendar date to |
126 |
|
model integration time |
127 |
|
|
128 |
|
checkpoint51l_pre |
129 |
|
o add salt flux to forcing fields (used when salty sea-ice forms or melts) |
130 |
|
o enable to apply restoring on S & T only in a latitude band. |
131 |
|
o update output (external_forcing_surf modif. change truncation errors) |
132 |
|
global_ocean.cs32x15, global_ocean_pressure, lab_sea, natl_box |
133 |
|
|
134 |
|
checkpoint51k_post |
135 |
|
o change default to: useNHMTerms=.FALSE. |
136 |
|
- new output.txt for atmos. exp (NHMTerms were wrong but now turned off): |
137 |
|
adjustment.128x64x1, aim.5l_Eq_Ch, aim.5l_LatLon, hs94.128x64x5, hs94.1x64x5 |
138 |
|
- new output.txt for idealized oceanic exp (NHMTerms are now turned off): |
139 |
|
exp1, ideal_2D_oce |
140 |
|
- change data file of oceanic exp (leave the results unchanged for now) |
141 |
|
exp2, global_ocean[90x40x15,pressure,with_exf], lab_sea, natl_box |
142 |
|
o set gravitySign automatically according to the vertical coordinate used |
143 |
|
(and change sign: back to "logical" value: +1 when R increases downward) |
144 |
|
o added an include barrier to the default CPP_OPTIONS.h and |
145 |
|
removed the #include "PACKAGES_CONFIG.h" from it |
146 |
|
o fix a bug in mom_fluxform (from chk51j_post) |
147 |
|
|
148 |
|
checkpoint51j_post |
149 |
|
o Added some AD-related initialisations in mom_vecinv/ mom_fluxform/ |
150 |
|
o adjusted some flow directives (dynamics, thermodynamics) |
151 |
|
o added cubed-sphere case to test cost function |
152 |
|
o heckpoint_lev?_directives.h now include |
153 |
|
pkg-specific directives, whenever those are enabled. |
154 |
|
o Moving pkg-specific flow directives to corresponding pkg |
155 |
|
Moving pkg-specific differentiation list to corresponding pkg |
156 |
|
Moving pkg-specific checkpoint-lev storing to corresponding pkg |
157 |
|
---> conventions are |
158 |
|
- pkg_ad.flow |
159 |
|
- pkg_ad_diff.list |
160 |
|
- pkg_ad_check_lev?_dir.h |
161 |
|
|
162 |
|
checkpoint51i_post |
163 |
|
o merge of the branch-genmake2 |
164 |
|
- knowingly breaks the older genmake |
165 |
|
- automatic generation of all ALLOW_${PKG_NAME} defines |
166 |
|
- new testreport supersedes older testscript |
167 |
|
o large number of package inclusion and header cleanups |
168 |
|
checkpoint51i_pre |
169 |
|
|
170 |
|
o new output for adjoin of global ocean vector invariant |
171 |
|
o fix for checkpoint of thermodynamic seaice and bulk_force |
172 |
|
o Steph gchem various cleanups |
173 |
|
|
174 |
|
checkpoint 51h_pre |
175 |
|
o fixed some single quotes |
176 |
|
o modify gchem pkg to be more versatile |
177 |
|
o modifications to clean up dic pkg |
178 |
|
o add pkg/cfc |
179 |
|
|
180 |
|
checkpoint51g_post |
181 |
|
o provide links for ARPACK and ADM*TLM |
182 |
|
o start removing verification/vero/ |
183 |
|
o update AD-related stuff |
184 |
|
(in particular some IF-statements in model/src/ routines) |
185 |
|
o adding to verification/global_ocean.90x40x15/ adjoint of |
186 |
|
vector invariant setup |
187 |
|
|
188 |
|
checkpoint51f_post |
189 |
|
o update advect_xz/output.txt (left from chekpoint50f_pre, ini_vel modif) |
190 |
|
o Mods and bug fixes to pkg/cal, pkg/exf, etc., needed for computation |
191 |
|
of tracer Green's fucntions for ocean inversion project. |
192 |
|
|
193 |
|
checkpoint51f_pre |
194 |
|
o Added on-the-fly spatial interpolation capability |
195 |
|
"USE_EXF_INTERPOLATION" to pkg/exf. |
196 |
|
- This is a temporary Cartesian-grid hack until |
197 |
|
the super-duper ESMF coupler becomes available. |
198 |
|
- See verification/global_with_exf/README for usage example. |
199 |
|
- Removed obsolete EXFwindOnBgrid and SEAICEwindOnCgrid |
200 |
|
flags and modified pkg/seaice accordingly. |
201 |
|
o Bug fix to pkg/ptracers, pkg/generic_advdiff/gad_calc_rhs.F, |
202 |
|
and pkg/kpp/kpp_transport_ptr.F for dealing with tracer |
203 |
|
non-local transport term. |
204 |
|
|
205 |
|
checkpoint51e_post |
206 |
|
o pkg/mom_vecinv: |
207 |
|
- changes related to hFac: use S/R from aim.5l_cs/code (coriolis & vort.advec) |
208 |
|
- add time-ave diagnostic of vorticity advection. |
209 |
|
o add diagnostic (instantaneous) of Shapiro Filter effect for T,S & UV. |
210 |
|
o atmospheric geopotential: - include water vapor effect; |
211 |
|
- use p^kappa in p* scaling. |
212 |
|
o land pkg: read initial state from files. |
213 |
|
o AIM : add stratospheric drag in the upper level |
214 |
|
|
215 |
|
checkpoint51d_post |
216 |
|
o change function ILNBLNK (=> last non-blank char.) to return zero |
217 |
|
(instead of the string length) when the string. char is empty |
218 |
|
o fix bug in dxV,dyU definition of cubed-sphere grid (ini_curvilinear_grid) |
219 |
|
o modif's to restore TAMC compatibility |
220 |
|
- avoid "_d" constructs in PARAMETER declarations |
221 |
|
- avoid interrupting lines by comment lines |
222 |
|
o Use cluster local disks for purely local I/O |
223 |
|
vs. globally visible disks needed for ctrl stuff |
224 |
|
(merged from ecco-branch) |
225 |
|
- new active_file_loc... and mdsio_..._loc routines |
226 |
|
- affected packages: autodiff, ctrl, grdchk, mdsio |
227 |
|
|
228 |
|
checkpoint51c_post |
229 |
|
o introducing integer flag debugLevel |
230 |
|
- debLevZero: suppress all output |
231 |
|
- debLevA: standard |
232 |
|
- debLevB: equivalent to current debugMode=.TRUE. |
233 |
|
o introducing pathname variable mdsioLocalDir for mdsio |
234 |
|
that can be specified at runtime |
235 |
|
(relevant for cluster I/O to local disk) |
236 |
|
` |
237 |
|
>>>checkpoint51b_post |
238 |
|
adjoint of ptracers |
239 |
|
o disentangled ALLOW_PTRACERS using new ALLOW_GCHEM |
240 |
|
o extended state in checkpoint_lev?, etc. |
241 |
|
o alternative ctrl/cost with tr1 or ptracer |
242 |
|
o new comlev1_bibj_ptracers |
243 |
|
o new ptracers.flow |
244 |
|
o made ptracers_forcing same as external_forcing_s |
245 |
|
o added verification for adjoint with ptracers |
246 |
|
- adm. grdchk fail so far |
247 |
|
- tlm. grdchk OK |
248 |
|
- checked tapelev/comlev recomputations: OK |
249 |
|
<<<checkpoint51b_pre |
250 |
|
|
251 |
checkpoint51a_post |
checkpoint51a_post |
252 |
o added code for biogeochemistry package |
o added code for biogeochemistry package |
253 |
- new pkgs: dic, gchem |
- new pkgs: dic, gchem |