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revision 1.211 by jmc, Sun Nov 23 00:44:11 2003 UTC revision 1.258 by heimbach, Mon Feb 23 19:20:16 2004 UTC
# Line 3  $Header$ Line 3  $Header$
3      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
4      ==============================      ==============================
5    
6    checkpoint52k_post
7    o removed top-level directory "diags"
8      - we migrated these functions to pkg/timeave a long time ago
9    o fixed bug introduced in pkg/monitor
10    o accuracy ctrlprec = 32 insuffient for gradient checks using
11      averaged fields (I/O via cost_averages)
12      -> use ctrl.h in active_file*.F to control I/O precision.
13    o paramter list of CALL ADTHE_MAIN_LOOP
14    o added initial do_the_model_io to ecco
15    o set all ...Freq to zero after cost_final
16      taveFreq, dumpFreq, pChkptFreq
17    o MAIN and ECCO differentiability restored
18    
19    checkpoint52j_post
20    o fix nchklev in tamc.h for global_ocean...
21    o Bringing flow and store directives up-to-date
22    o Really weird thing!
23      call do_the_model_io from the_main_loop with parameters
24      starttime, niter0, instead of mytime, myiter, screws up the adjoint:
25      TAF places a faulty re-call of initialise_varia
26      after cost_final call which should not be there!
27    checkpoint52j_pre
28    
29    o tweaked pkg/mdsio/mdsio_readfield.F to have more useful logic and
30      error messages
31    o fix errorMessageUnit problem. remove old version of mdsio from eesup/src
32    o modified pkg/mdsio/mdsio_readfield.F -- commented out diskspace-eating
33      debug output
34    o modfied mdsio_writefield.F to handle non-global files under exch2
35    o update AIM Cubed-Sphere exp (aim.5l_cs):
36      use land, p*, and Franco.M forcing fields with fractional land-sea mask.
37    o update AIM Equatorial Channel exp:
38      use standard aim_v23 pkg and change the SST fields to be more realistic.
39    o globalFile now works with exch2
40    o merged mom_vi_calc_relvort3.F, mom_vi_del2uv.F and
41      mon_vort3.F to make exch2 friendly with >1 tile per cube face
42    o limit timeave output for hi-res integrations
43    
44    checkpoint52i_post
45    o removed CPP_EEOPTIONS.h from verification/*/code
46    o updated the tiling for global_ocean_pressure
47    checkpoint52i_pre
48    
49    o update aim.5l_LatLon using the standard aim_v23 pkg (instead of
50      the old pkg/aim).
51    
52    checkpoint52h_pre
53    o shortened offending lines in exch2_send_rx?.template
54    o modified W2_EXCH2_TOPOLOGY.h to reflect current topology generator
55    o genmake2: add build & execute test for NetCDF code
56    o modded aim.5l_cs and global_ocean.cs32x15 to use exch2, removed
57      old grid files, moved CPP_EEMACROS.h to pkg/exch2
58    o added useSingleCPUIO flag to monitor.F and mon_out.F
59    o added temporary hack for sea-ice dynamics on the cube:
60      metric terms are ignored and it is assumed that
61      there is no sea-ice on cube faces 1, 2, 4, and 5.
62    
63    checkpoint52f_post
64    o added exch2 cube routines to pkg/exch2
65    o modified hs94.cs-32x32x5 to use it
66    o added new grid files to hs94.cs-32x32x5
67    checkpoint52f_pre
68    
69    checkpoint52e_post
70    o first attempt to solve vertical advection (momemtum & T,S) Implicitly
71      for now, only implemented with Lax-Wendroff (tracer) and VectInv (mom)
72    o step.1 : rewrite (as in MultiDimAdvec) explicit tracer stepping (gad_calc_rhs.F)
73      to work with implicit vertical advection and AB ;
74    o Implic. vert. advect. implemented with flux-limiter, c2, u3 and c4 scheme.
75    o update output (gad_calc_rhs.F changes affect truncation error) of exp:
76     front_relax, global_ocean .cs32x15 & _pressure, internal_wave, lab_sea, natl_box
77    checkpoint52e_pre
78    
79    o fix bug in impldiff when Nr=1 or Nr=2.
80    o change the albedo in pkg/thsice (as GISS model); update output_thsice.txt
81    o little changes (fftpack, aim/phy_suflux ...) to pass the "checkbounds" test.
82    o fix deltaTfreesurf in update_cg2d.F (left from c45d_post): affects 2
83      ocean exp. that use NLFS: global_ocean.cs32x15 & global_ocean_pressure
84    o added exf_offset_atemp for Celsius to Kelvin conversion of atemp
85    o eesupp/inc/EEPARAMS.h: MAX_NO_PROCS=1024
86    o pkg/cal/cal_toseconds.F fix for long (>60 years) integrations
87    
88    checkpoint52d_post
89    o re-tiled many expts to allow comparison in multi-processor mode
90      - updated output accordingly
91      - changed hs94.128x64x5 to use intial T from file rather than use the
92        random number generator
93    o add infrastructure in model routines for fizhi and gridalt packages
94    o change global_ocean.cs32x15 because of Pb with GM on CS-grid.
95    o changes to permit hi-res, cubed-sphere, configuration
96      - added useSingleCpuIO capability to mdsio_readfield.F and exf_interp.F
97      - added "#undef ALLOW_USE_MPI" support to eesupp/src/scatter_2d.F
98      - added pkg/exf/exf_set_uv.F for on-the-fly interpolation and rotation
99        of surface winds for the cube
100      (A verification experiment, based on global_ocean.cs32x15, but with
101       pkg/seaice turned on and with on-the-fly interpolation from the NCEP
102       Gaussian grid is described in MITgcm_contrib/high_res_cube/README_ice,
103       complete with example surface forcing files and matlab scripts to look
104       at the output and compare it with that of global_ocean.cs32x15.)
105    o packages pickup: $PKG_write_pickup called from packages_write_pickup ;
106       but call to $PKG_read_pickup remains in $PKG_ini_vars: change CD_code
107       to conform to the common rule.
108    o check-in the first version of the coupler + interfaces for multi-components
109       set-up (Chris's version, adapted to work on cubed-sphere grid); use MPI.
110       - imply modification in eesupp (MPI_COMM_MODEL < MPI_COMM_WORLD).
111       - atmosphere: use pkg aim_v23 ; no sea-ice for now.
112       - ocean and atmos. share the same horizontal grid (no interpolation).
113       - exchanges between component and coupler is done in forward_step
114    o new verification experiment, cpl_aim+ocn:
115       coupled ocean - AIM atmosphere on cs32 grid.
116    
117    checkpoint52d_pre
118    o surface flux time-av diagnostic modified for NLFS & RealFreshWater
119    o add call to AIM pendant S/R in external_forcing & external_fields_load.F
120    
121    checkpoint52c_post
122    o Fixing OPTIONS files for use of exf:
123      - ALLOW_ECCO not needed
124      - ECCO_CPPOPTIONS.h should not be included from
125        EXF_OPTIONS.h/CAL_OPTIONS.h, but from CPP_OPTIONS.h
126        as has been the case in the past
127      - All cal/exf related options are currently set in
128        single header file. Should remain so until we
129        agree on a consistent new policy.
130    o Removed all CPP options for cal package.
131      cal has no more CPP options.
132    o modified STOREs in GAD_ADVECTION
133    o corrected key comp. for passkey
134    
135    checkpoint52b_post
136    o new version: "thsice" of thermodynamic sea-ice pkg:
137     - only 1 call from "forward_step"; conserve energy, fresh-water & salt.
138     - modify fluxes but do not change theta directly;
139     - light cleaning of bulk_force pkg (still needed with thsice).
140     - add forcing fields + data files in global_ocean.cs32x15/inp_thsice
141       + output_thsice.txt to test thsice & bulk_force pkgs.
142    o put back grid & coriolis monitor output.
143  checkpoint52b_pre  checkpoint52b_pre
144    
145  o call "do_the_model_io" at the beginning (=> dump initial state)  o call "do_the_model_io" at the beginning (=> dump initial state)

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