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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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checkpoint51k_post |
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o change default to: useNHMTerms=.FALSE. |
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- new output.txt for atmos. exp (NHMTerms were wrong but now turned off): |
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adjustment.128x64x1, aim.5l_Eq_Ch, aim.5l_LatLon, hs94.128x64x5, hs94.1x64x5 |
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- new output.txt for idealized oceanic exp (NHMTerms are now turned off): |
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exp1, ideal_2D_oce |
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- change data file of oceanic exp (leave the results unchanged for now) |
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exp2, global_ocean[90x40x15,pressure,with_exf], lab_sea, natl_box |
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o set gravitySign automatically according to the vertical coordinate used |
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(and change sign: back to "logical" value: +1 when R increases downward) |
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o added an include barrier to the default CPP_OPTIONS.h and |
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removed the #include "PACKAGES_CONFIG.h" from it |
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o fix a bug in mom_fluxform (from chk51j_post) |
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checkpoint51j_post |
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o Added some AD-related initialisations in mom_vecinv/ mom_fluxform/ |
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o adjusted some flow directives (dynamics, thermodynamics) |
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o added cubed-sphere case to test cost function |
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o heckpoint_lev?_directives.h now include |
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pkg-specific directives, whenever those are enabled. |
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o Moving pkg-specific flow directives to corresponding pkg |
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Moving pkg-specific differentiation list to corresponding pkg |
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Moving pkg-specific checkpoint-lev storing to corresponding pkg |
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---> conventions are |
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- pkg_ad.flow |
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- pkg_ad_diff.list |
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- pkg_ad_check_lev?_dir.h |
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checkpoint51i_post |
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o merge of the branch-genmake2 |
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- knowingly breaks the older genmake |
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- automatic generation of all ALLOW_${PKG_NAME} defines |
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- new testreport supersedes older testscript |
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o large number of package inclusion and header cleanups |
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checkpoint51i_pre |
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o new output for adjoin of global ocean vector invariant |
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o fix for checkpoint of thermodynamic seaice and bulk_force |
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o Steph gchem various cleanups |
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checkpoint 51h_pre |
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o fixed some single quotes |
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o modify gchem pkg to be more versatile |
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o modifications to clean up dic pkg |
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o add pkg/cfc |
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checkpoint51g_post |
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o provide links for ARPACK and ADM*TLM |
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o start removing verification/vero/ |
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o update AD-related stuff |
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(in particular some IF-statements in model/src/ routines) |
| 57 |
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o adding to verification/global_ocean.90x40x15/ adjoint of |
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vector invariant setup |
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checkpoint51f_post |
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o update advect_xz/output.txt (left from chekpoint50f_pre, ini_vel modif) |
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o Mods and bug fixes to pkg/cal, pkg/exf, etc., needed for computation |
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of tracer Green's fucntions for ocean inversion project. |
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checkpoint51f_pre |
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o Added on-the-fly spatial interpolation capability |
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"USE_EXF_INTERPOLATION" to pkg/exf. |
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- This is a temporary Cartesian-grid hack until |
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the super-duper ESMF coupler becomes available. |
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- See verification/global_with_exf/README for usage example. |
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- Removed obsolete EXFwindOnBgrid and SEAICEwindOnCgrid |
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flags and modified pkg/seaice accordingly. |
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o Bug fix to pkg/ptracers, pkg/generic_advdiff/gad_calc_rhs.F, |
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and pkg/kpp/kpp_transport_ptr.F for dealing with tracer |
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non-local transport term. |
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checkpoint51e_post |
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o pkg/mom_vecinv: |
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- changes related to hFac: use S/R from aim.5l_cs/code (coriolis & vort.advec) |
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- add time-ave diagnostic of vorticity advection. |
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o add diagnostic (instantaneous) of Shapiro Filter effect for T,S & UV. |
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o atmospheric geopotential: - include water vapor effect; |
| 83 |
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- use p^kappa in p* scaling. |
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o land pkg: read initial state from files. |
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o AIM : add stratospheric drag in the upper level |
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checkpoint51d_post |
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o change function ILNBLNK (=> last non-blank char.) to return zero |
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(instead of the string length) when the string. char is empty |
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o fix bug in dxV,dyU definition of cubed-sphere grid (ini_curvilinear_grid) |
| 91 |
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o modif's to restore TAMC compatibility |
| 92 |
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- avoid "_d" constructs in PARAMETER declarations |
| 93 |
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- avoid interrupting lines by comment lines |
| 94 |
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o Use cluster local disks for purely local I/O |
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vs. globally visible disks needed for ctrl stuff |
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(merged from ecco-branch) |
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- new active_file_loc... and mdsio_..._loc routines |
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- affected packages: autodiff, ctrl, grdchk, mdsio |
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checkpoint51c_post |
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o introducing integer flag debugLevel |
| 102 |
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- debLevZero: suppress all output |
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- debLevA: standard |
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- debLevB: equivalent to current debugMode=.TRUE. |
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o introducing pathname variable mdsioLocalDir for mdsio |
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that can be specified at runtime |
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(relevant for cluster I/O to local disk) |
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` |
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>>>checkpoint51b_post |
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adjoint of ptracers |
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o disentangled ALLOW_PTRACERS using new ALLOW_GCHEM |
| 112 |
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o extended state in checkpoint_lev?, etc. |
| 113 |
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o alternative ctrl/cost with tr1 or ptracer |
| 114 |
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o new comlev1_bibj_ptracers |
| 115 |
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o new ptracers.flow |
| 116 |
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o made ptracers_forcing same as external_forcing_s |
| 117 |
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o added verification for adjoint with ptracers |
| 118 |
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- adm. grdchk fail so far |
| 119 |
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- tlm. grdchk OK |
| 120 |
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- checked tapelev/comlev recomputations: OK |
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<<<checkpoint51b_pre |
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checkpoint51a_post |
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o added code for biogeochemistry package |
| 125 |
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- new pkgs: dic, gchem |
| 126 |
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- new subroutine in ptracers |
| 127 |
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o modify code for biogeo packages |
| 128 |
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- in model/src and pkg/ptracers |
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checkpoint51 |
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o merged improved packages from ecco-branch (ecco_c51_e34) to MAIN |
| 132 |
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- autodiff, ctrl, exf, grdchk, seaice |
| 133 |
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kept separate packages |
| 134 |
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- cost, ecco, obcs |
| 135 |
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o updating verification/internal_wave, verification/lab_sea |
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(all verif's pass on faulks.lcs.mit.edu RH7.3, g77) |
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| 138 |
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checkpoint50i_post |
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o Preparing next differentiable checkpoint and sync |
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of MAIN vs. ecco-branch |
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- 1st step: this one is differentiable |
| 142 |
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- 2nd step: next(! not this) checkpoint will have updated packages |
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from ecco-branch) |
| 144 |
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checkpoint50h_post |
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o new package "land": provide surface BC for AIM. |
| 147 |
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o pkg/ptracers: apply exchange to all tracers after reading a pickup. |
| 148 |
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o AIM: use true log-P extrapolation for near surface temp (= as in |
| 149 |
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F.Molteni paper) ; update aim.5l_cs output. |
| 150 |
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o New variable in PARM03 for more flexible pickups |
| 151 |
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o somewhat cleaned package initialisation sequence for |
| 152 |
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ctrl/ cost/ ecco/ in packages_... routines |
| 153 |
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| 154 |
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checkpoint50g_post |
| 155 |
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o merged with release1_p17 (pkg/seaice and verification/lab_sea) |
| 156 |
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- added SEAICE_MULTILEVEL for 8-category sea-ice thermodynamics |
| 157 |
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- LSR sea-ice dynamic solver moved to SouthWest B-grid location and |
| 158 |
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made the default because of faster convergence than ADI |
| 159 |
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| 160 |
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checkpoint50f_post |
| 161 |
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o exf totally restructured |
| 162 |
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- replaced all exf_set_ routines by one generic exf_set_gen.F |
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and made sure it's still differentiable |
| 164 |
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- split exf_getffields.F into new exf_bulkformulae.F |
| 165 |
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- exf_inscal_/exf_outscal_ suffixes consistent with field names |
| 166 |
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- updated adjoint/makefile and relevant verif. accordingly |
| 167 |
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| 168 |
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checkpoint50f_pre |
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o AIM: near surface temp evaluated from Pot.Temp: fixed for Part Cell ; |
| 170 |
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+ change Evap over land. (update aim.5l_cs output) |
| 171 |
o added missing .cvsignores and made uniform across expts |
o added missing .cvsignores and made uniform across expts |
| 172 |
o changed configuration of tidal_basin_2d expt |
o changed configuration of tidal_basin_2d expt |
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o added pkg/debug functions for tracing code in fatal crashes |
o added pkg/debug functions for tracing code in fatal crashes |
| 174 |
o tidied pkg/monitor to use MONITOR_OPTIONS.h |
o tidied pkg/monitor to use MONITOR_OPTIONS.h |
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o new fn in pkg/monitor to stop model if solution grows too big |
o new fn in pkg/monitor to stop model if solution grows too big |
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o removed lots of single quotes from comments |
o removed lots of single quotes from comments |
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o fixed gather/scatter inital MPI dialogue in ini_procs.F |
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| 178 |
checkpoint50e_post |
checkpoint50e_post |
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o make KPP work with PTRACERS |
o make KPP work with PTRACERS |
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