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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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checkpoint51k_post |
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o change default to: useNHMTerms=.FALSE. |
8 |
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- new output.txt for atmos. exp (NHMTerms were wrong but now turned off): |
9 |
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adjustment.128x64x1, aim.5l_Eq_Ch, aim.5l_LatLon, hs94.128x64x5, hs94.1x64x5 |
10 |
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- new output.txt for idealized oceanic exp (NHMTerms are now turned off): |
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exp1, ideal_2D_oce |
12 |
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- change data file of oceanic exp (leave the results unchanged for now) |
13 |
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exp2, global_ocean[90x40x15,pressure,with_exf], lab_sea, natl_box |
14 |
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o set gravitySign automatically according to the vertical coordinate used |
15 |
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(and change sign: back to "logical" value: +1 when R increases downward) |
16 |
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o added an include barrier to the default CPP_OPTIONS.h and |
17 |
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removed the #include "PACKAGES_CONFIG.h" from it |
18 |
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o fix a bug in mom_fluxform (from chk51j_post) |
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checkpoint51j_post |
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o Added some AD-related initialisations in mom_vecinv/ mom_fluxform/ |
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o adjusted some flow directives (dynamics, thermodynamics) |
23 |
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o added cubed-sphere case to test cost function |
24 |
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o heckpoint_lev?_directives.h now include |
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pkg-specific directives, whenever those are enabled. |
26 |
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o Moving pkg-specific flow directives to corresponding pkg |
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Moving pkg-specific differentiation list to corresponding pkg |
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Moving pkg-specific checkpoint-lev storing to corresponding pkg |
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---> conventions are |
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- pkg_ad.flow |
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- pkg_ad_diff.list |
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- pkg_ad_check_lev?_dir.h |
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checkpoint51i_post |
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o merge of the branch-genmake2 |
36 |
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- knowingly breaks the older genmake |
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- automatic generation of all ALLOW_${PKG_NAME} defines |
38 |
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- new testreport supersedes older testscript |
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o large number of package inclusion and header cleanups |
40 |
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checkpoint51i_pre |
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42 |
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o new output for adjoin of global ocean vector invariant |
43 |
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o fix for checkpoint of thermodynamic seaice and bulk_force |
44 |
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o Steph gchem various cleanups |
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46 |
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checkpoint 51h_pre |
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o fixed some single quotes |
48 |
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o modify gchem pkg to be more versatile |
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o modifications to clean up dic pkg |
50 |
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o add pkg/cfc |
51 |
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52 |
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checkpoint51g_post |
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o provide links for ARPACK and ADM*TLM |
54 |
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o start removing verification/vero/ |
55 |
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o update AD-related stuff |
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(in particular some IF-statements in model/src/ routines) |
57 |
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o adding to verification/global_ocean.90x40x15/ adjoint of |
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vector invariant setup |
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60 |
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checkpoint51f_post |
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o update advect_xz/output.txt (left from chekpoint50f_pre, ini_vel modif) |
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o Mods and bug fixes to pkg/cal, pkg/exf, etc., needed for computation |
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of tracer Green's fucntions for ocean inversion project. |
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checkpoint51f_pre |
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o Added on-the-fly spatial interpolation capability |
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"USE_EXF_INTERPOLATION" to pkg/exf. |
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- This is a temporary Cartesian-grid hack until |
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the super-duper ESMF coupler becomes available. |
70 |
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- See verification/global_with_exf/README for usage example. |
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- Removed obsolete EXFwindOnBgrid and SEAICEwindOnCgrid |
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flags and modified pkg/seaice accordingly. |
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o Bug fix to pkg/ptracers, pkg/generic_advdiff/gad_calc_rhs.F, |
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and pkg/kpp/kpp_transport_ptr.F for dealing with tracer |
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non-local transport term. |
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checkpoint51e_post |
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o pkg/mom_vecinv: |
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- changes related to hFac: use S/R from aim.5l_cs/code (coriolis & vort.advec) |
80 |
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- add time-ave diagnostic of vorticity advection. |
81 |
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o add diagnostic (instantaneous) of Shapiro Filter effect for T,S & UV. |
82 |
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o atmospheric geopotential: - include water vapor effect; |
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- use p^kappa in p* scaling. |
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o land pkg: read initial state from files. |
85 |
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o AIM : add stratospheric drag in the upper level |
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checkpoint51d_post |
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o change function ILNBLNK (=> last non-blank char.) to return zero |
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(instead of the string length) when the string. char is empty |
90 |
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o fix bug in dxV,dyU definition of cubed-sphere grid (ini_curvilinear_grid) |
91 |
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o modif's to restore TAMC compatibility |
92 |
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- avoid "_d" constructs in PARAMETER declarations |
93 |
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- avoid interrupting lines by comment lines |
94 |
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o Use cluster local disks for purely local I/O |
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vs. globally visible disks needed for ctrl stuff |
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(merged from ecco-branch) |
97 |
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- new active_file_loc... and mdsio_..._loc routines |
98 |
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- affected packages: autodiff, ctrl, grdchk, mdsio |
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checkpoint51c_post |
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o introducing integer flag debugLevel |
102 |
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- debLevZero: suppress all output |
103 |
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- debLevA: standard |
104 |
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- debLevB: equivalent to current debugMode=.TRUE. |
105 |
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o introducing pathname variable mdsioLocalDir for mdsio |
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that can be specified at runtime |
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(relevant for cluster I/O to local disk) |
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` |
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>>>checkpoint51b_post |
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adjoint of ptracers |
111 |
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o disentangled ALLOW_PTRACERS using new ALLOW_GCHEM |
112 |
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o extended state in checkpoint_lev?, etc. |
113 |
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o alternative ctrl/cost with tr1 or ptracer |
114 |
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o new comlev1_bibj_ptracers |
115 |
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o new ptracers.flow |
116 |
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o made ptracers_forcing same as external_forcing_s |
117 |
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o added verification for adjoint with ptracers |
118 |
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- adm. grdchk fail so far |
119 |
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- tlm. grdchk OK |
120 |
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- checked tapelev/comlev recomputations: OK |
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<<<checkpoint51b_pre |
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checkpoint51a_post |
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o added code for biogeochemistry package |
125 |
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- new pkgs: dic, gchem |
126 |
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- new subroutine in ptracers |
127 |
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o modify code for biogeo packages |
128 |
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- in model/src and pkg/ptracers |
129 |
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130 |
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checkpoint51 |
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o merged improved packages from ecco-branch (ecco_c51_e34) to MAIN |
132 |
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- autodiff, ctrl, exf, grdchk, seaice |
133 |
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kept separate packages |
134 |
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- cost, ecco, obcs |
135 |
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o updating verification/internal_wave, verification/lab_sea |
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(all verif's pass on faulks.lcs.mit.edu RH7.3, g77) |
137 |
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138 |
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checkpoint50i_post |
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o Preparing next differentiable checkpoint and sync |
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of MAIN vs. ecco-branch |
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- 1st step: this one is differentiable |
142 |
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- 2nd step: next(! not this) checkpoint will have updated packages |
143 |
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from ecco-branch) |
144 |
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145 |
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checkpoint50h_post |
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o new package "land": provide surface BC for AIM. |
147 |
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o pkg/ptracers: apply exchange to all tracers after reading a pickup. |
148 |
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o AIM: use true log-P extrapolation for near surface temp (= as in |
149 |
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F.Molteni paper) ; update aim.5l_cs output. |
150 |
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o New variable in PARM03 for more flexible pickups |
151 |
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o somewhat cleaned package initialisation sequence for |
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ctrl/ cost/ ecco/ in packages_... routines |
153 |
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154 |
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checkpoint50g_post |
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o merged with release1_p17 (pkg/seaice and verification/lab_sea) |
156 |
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- added SEAICE_MULTILEVEL for 8-category sea-ice thermodynamics |
157 |
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- LSR sea-ice dynamic solver moved to SouthWest B-grid location and |
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made the default because of faster convergence than ADI |
159 |
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160 |
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checkpoint50f_post |
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o exf totally restructured |
162 |
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- replaced all exf_set_ routines by one generic exf_set_gen.F |
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and made sure it's still differentiable |
164 |
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- split exf_getffields.F into new exf_bulkformulae.F |
165 |
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- exf_inscal_/exf_outscal_ suffixes consistent with field names |
166 |
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- updated adjoint/makefile and relevant verif. accordingly |
167 |
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168 |
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checkpoint50f_pre |
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o AIM: near surface temp evaluated from Pot.Temp: fixed for Part Cell ; |
170 |
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+ change Evap over land. (update aim.5l_cs output) |
171 |
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o added missing .cvsignores and made uniform across expts |
172 |
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o changed configuration of tidal_basin_2d expt |
173 |
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o added pkg/debug functions for tracing code in fatal crashes |
174 |
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o tidied pkg/monitor to use MONITOR_OPTIONS.h |
175 |
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o new fn in pkg/monitor to stop model if solution grows too big |
176 |
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o removed lots of single quotes from comments |
177 |
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178 |
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checkpoint50e_post |
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o make KPP work with PTRACERS |
180 |
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- fix gad_calc_rhs to call new routine kpp_transport_ptr, which is |
181 |
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nearly a copy of kpp_transport_s |
182 |
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- there is no analogue to SurfaceTendencyS, so I have to use |
183 |
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gPtr(of the surface layer) instead |
184 |
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o add a new platform SunFire+mpi (SunFire 15000) to genmake |
185 |
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checkpoint50e_pre |
186 |
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187 |
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checkpoint50d_post |
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o change kpp output from multiple-record state files to single-record state |
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files analogous to write_state.F |
190 |
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o reduce the output frequency of cg3d-related stuff to the monitor frequency, |
191 |
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analogous to the cg2d-related output. |
192 |
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o fix small problem with in ptracers_write_checkpoint.F: len(suff)=512, |
193 |
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so that writing to internal file fn (with length 512) fails. |
194 |
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checkpoint50d_pre |
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196 |
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checkpoint50c_post |
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o fix problem in ini_procs.F when using MPI (was there since checkpoint48f) |
198 |
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o add monitor diagnostic of vorticity (mon_vort3.F) and potential energy. |
199 |
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o add time-average diagnostic of U*V and vertical diffusive flux for theta. |
200 |
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o bug fixed in convective adjustment diagnostic (multi-tile set-up). |
201 |
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o 4th Order Adv scheme: return to previous (c40pre7) masking near boundaries. |
202 |
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203 |
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checkpoint50c_pre |
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Merging from release1_p13: |
205 |
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o bug fix for pkg/seaice dynamic solver |
206 |
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o Added SEAICE_initialHEFF to pkg/seaice |
207 |
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208 |
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checkpoint50b_post |
209 |
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o store u*,v* in gU,V instead of in guNm1,gvNm1 |
210 |
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o in order to put the momForcing out of the Adams-Bashforth: |
211 |
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move forcing & CD-scheme calls from mom_fluxform & mom_vecinv |
212 |
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to timestep.F |
213 |
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o new flag "useCDscheme" (default=F); replace guCD,gvCD by local arrays |
214 |
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o re-generate output for highly sensitive test-exp: |
215 |
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global_ocean_pressure, ideal_2D_oce, lab_sea, natl_box |
216 |
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217 |
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checkpoint50b_pre |
218 |
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o restore the use of momAdvection & useCoriolis flags (mom_vecinv) |
219 |
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o corrected CPP option mismatch in exf_Bulk... functions for case |
220 |
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#define ALLOW_ATM_WIND && #undef ALLOW_ATM_TEMP |
221 |
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222 |
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checkpoint50a_post |
223 |
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o Bug fix for merging between c50 and KPP. |
224 |
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ikey was passed from thermodynamics to kpp_calc via |
225 |
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common block rather than being recomputed in kpp_calc, |
226 |
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in contradiction with new key itdkey. |
227 |
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New key ikppkey created, and tamc.h headers updated. |
228 |
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229 |
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checkpoint50 |
230 |
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- 2nd step of merge with ecco-branch: |
231 |
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merge changes in ecco-branch back into main trunk |
232 |
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- bug fix in find_alpha |
233 |
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- more storing in gmredi_calc_tensor.F, kpp_routines.F |
234 |
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- avoid iterative loop in ini_pressure for ALLOW_AUTODIFF_TAMC |
235 |
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- merged some sliced AD support routines |
236 |
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237 |
checkpoint49 |
checkpoint49 |
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merged from ecco-branch: |
merged from ecco-branch: |
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o exf: |
o exf: |
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- synchronized with main branch |
- synchronized with main branch |
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o DIVA: |
o DIVA: |
257 |
Modif.s in |
Modif.s in |
258 |
- ecco_the_main_loop.F |
- the_main_loop.F |
259 |
- ecco_the_model_main.F |
- the_model_main.F |
260 |
and added cost_final_restore.F cost_final_store.F |
and added cost_final_restore.F cost_final_store.F |
261 |
o With these changes, it is possible to fully separate |
o With these changes, it is possible to fully separate |
262 |
the first forward run to compute the cost function (mdthe_main_loop) |
the first forward run to compute the cost function (mdthe_main_loop) |