/[MITgcm]/MITgcm/doc/tag-index
ViewVC logotype

Diff of /MITgcm/doc/tag-index

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph | View Patch Patch

revision 1.137 by jmc, Wed Feb 26 03:29:08 2003 UTC revision 1.203 by edhill, Tue Nov 4 21:42:15 2003 UTC
# Line 3  $Header$ Line 3  $Header$
3      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
4      ==============================      ==============================
5    
6  untagged  checkpoint51s_post
7    o cleanup: removed various obsolete #define-s
8    
9    checkpoint51r_post
10    o cleaned up or removed CPP_OPTIONS.h files
11    o updated results for some of the tests to reflect the new
12      optfiles (-ieee: -O0 instead of -O3)
13    
14    checkpoint51q_post
15    o cd_code:
16      - moved cd_scheme.F -> cd_code_scheme.F
17      - separate read_checkpoint from cd_code_ini_vars.F
18      - separated cd_code part from write_checkpoint
19      - updated AD_SOURCE, generated .flow
20      - added CD_CODE_VARS.h to the_main_loop
21      - Moving cd_code specific store dir.s to pkg/cd_code
22    o ctrl package totally restructured
23      - pack/unpack now optional and decoupled from
24        xx_/adxx_ I/O
25      - ctrl_pack/unpack cleaned
26        (new routines ctrl_init_ctrlvar.F, pkg/ctrl/ctrl_init_wet.F)
27      - confined inclusion of AD_CONFIG.h to where necessary.
28    o genmake2: changed AD dependencies from SRCFILES to AD_FILES
29    
30    checkpoint51p_post
31    o create initial cd_code package
32      - WARNING: the initialization of fields within packages
33        is broken because INI_FIELDS (where READ_CHECKPOINT is
34        called) is called *before* PACKAGES_INIT_VARIABLES.
35        This seems to be backwards since
36        1) its important to initially zero the entire field including
37           the "halo" region
38        2) zeroing needs to be done *before* reading pickup info
39           and the pickup call might or might not happen in any
40           particular run
41      - this needs an overhaul for R2
42    o cleanup verification/*/code/GMREDI_OPTIONS.h
43    o cleanup testreport
44    
45    checkpoint51o_post
46    o bringing AD-related verif's up to date with genmake2
47      - carbon/
48      - global_ocean.90x40x15/
49      - hs.94.1x64x5/
50      - (front_relax/ )
51    o (more) consistent directory structure for AD-related verif.'s
52    o cleaning ALLOW_GRADIENT_CHECK -> ALLOW_GRDCHK
53    o cleaning some ALLOW_TANGENTLINEAR_RUN -> ALLOW_AUTODIFF
54    o bug fix in find_alpha.F for MDJWF:
55      - modif. to alpha = 1/D*( dN/dT - rho*dD/Dt) to account for
56        change rho -> rho-rhoConst
57      - replace call find_rho to find_rhonum
58    o initialisation of rFlx extended to full array (required by TAF)
59      and shifted to thermodynamics
60    o removed PTRACERS.h in ptracers routine
61    o added surfacetendencyPtr to S/R parameter list pracers_forcing
62    o Correcting initialisations for fVerU, fVerV.
63    o helping TAF to recognize dependency on kUp for
64      fVerU, fVerV
65    o Replacing delZ by delR in pkg/ctrl/
66    checkpoint51o_pre
67    
68    o undid all of cp51 pending some cleanups and discussion
69    o added the [#include "AD_CONFIG.h"] statement to all files that need
70       it for adjoint/tl #defines
71     o re-worked the build logic in genmake2 to support AD_CONFIG.h
72     o removed tools/genmake since it no longer works
73    
74    checkpoint51n_post
75    o modifications to make FREEZE flux visible to pkg/kpp
76      - moved surfaceTendencyTice from pkg/seaice to main code
77      - FREEZE & EXTERNAL_FORCING_SURF moved to FORWARD_STEP
78      - subroutine FREEZE now limits only surface temperature
79        (this means new output.txt for global_ocean.90x40x15,
80         global_ocean.cs32x15, and global_with_exf)
81    o added surface flux output variables to TIMEAVE_STATVARS
82    
83    checkpoint51n_pre
84    o added "#undef ALLOW_USE_MPI" support to eesupp/src/gather_2d.F
85    o added [#include "AD_CONFIG.h"] to all files that use the following
86      defines:
87      - ALLOW_ADJOINT_RUN
88      - ALLOW_TANGENTLINEAR_RUN
89      - ALLOW_ECCO_OPTIMIZATION
90    
91    checkpoint51m_post
92    o incorporating changes to get TAMC/TAF working in genmake2
93      - added new TAMC/TAF targets to the Makefile
94      - various cleanups related to package handling
95      - these changes should have no impact on the forward model
96    
97    checkpoint51l_post
98    o changes to pkg/cal and pkg/exf that allow and speed-up long integrations
99     - faster algorithm for cal_addtime.F
100     - higher precision arithmetic, where needed
101     - pkg/exf *startdate variables changed from calendar date to
102       model integration time
103    
104    checkpoint51l_pre
105    o add salt flux to forcing fields (used when salty sea-ice forms or melts)
106    o enable to apply restoring on S & T only in a latitude band.
107    o update output (external_forcing_surf modif. change truncation errors)
108       global_ocean.cs32x15, global_ocean_pressure, lab_sea, natl_box
109    
110    checkpoint51k_post
111    o change default to: useNHMTerms=.FALSE.
112     - new output.txt for atmos. exp (NHMTerms were wrong but now turned off):
113       adjustment.128x64x1, aim.5l_Eq_Ch, aim.5l_LatLon, hs94.128x64x5, hs94.1x64x5
114     - new output.txt for idealized oceanic exp (NHMTerms are now turned off):
115        exp1, ideal_2D_oce
116     - change data file of oceanic exp (leave the results unchanged for now)
117       exp2, global_ocean[90x40x15,pressure,with_exf], lab_sea, natl_box
118    o set gravitySign automatically according to the vertical coordinate used
119      (and change sign: back to "logical" value: +1 when R increases downward)
120    o added an include barrier to the default CPP_OPTIONS.h and
121      removed the #include "PACKAGES_CONFIG.h" from it
122    o fix a bug in mom_fluxform (from chk51j_post)
123    
124    checkpoint51j_post
125    o Added some AD-related initialisations in mom_vecinv/ mom_fluxform/
126    o adjusted some flow directives (dynamics, thermodynamics)
127    o added cubed-sphere case to test cost function
128    o heckpoint_lev?_directives.h now include
129      pkg-specific directives, whenever those are enabled.
130    o Moving pkg-specific flow directives to corresponding pkg
131      Moving pkg-specific differentiation list to corresponding pkg
132      Moving pkg-specific checkpoint-lev storing to corresponding pkg
133      ---> conventions are
134           - pkg_ad.flow
135           - pkg_ad_diff.list
136           - pkg_ad_check_lev?_dir.h
137    
138    checkpoint51i_post
139    o merge of the branch-genmake2
140      - knowingly breaks the older genmake
141      - automatic generation of all ALLOW_${PKG_NAME} defines
142      - new testreport supersedes older testscript
143    o large number of package inclusion and header cleanups
144    checkpoint51i_pre
145    
146    o new output for adjoin of global ocean vector invariant
147    o fix for checkpoint of thermodynamic seaice and bulk_force
148    o Steph gchem various cleanups
149    
150    checkpoint 51h_pre
151    o fixed some single quotes
152    o modify gchem pkg to be more versatile
153    o modifications to clean up dic pkg
154    o add pkg/cfc
155    
156    checkpoint51g_post
157    o provide links for ARPACK and ADM*TLM
158    o start removing verification/vero/
159    o update AD-related stuff
160      (in particular some IF-statements in model/src/ routines)
161    o adding to verification/global_ocean.90x40x15/ adjoint of
162      vector invariant setup
163    
164    checkpoint51f_post
165    o update advect_xz/output.txt (left from chekpoint50f_pre, ini_vel modif)
166    o Mods and bug fixes to pkg/cal, pkg/exf, etc., needed for computation
167      of tracer Green's fucntions for ocean inversion project.
168    
169    checkpoint51f_pre
170    o Added on-the-fly spatial interpolation capability
171        "USE_EXF_INTERPOLATION" to pkg/exf.
172      - This is a temporary Cartesian-grid hack until
173        the super-duper ESMF coupler becomes available.
174      - See verification/global_with_exf/README for usage example.
175      - Removed obsolete EXFwindOnBgrid and SEAICEwindOnCgrid
176        flags and modified pkg/seaice accordingly.
177    o Bug fix to pkg/ptracers, pkg/generic_advdiff/gad_calc_rhs.F,
178        and pkg/kpp/kpp_transport_ptr.F for dealing with tracer
179        non-local transport term.
180    
181    checkpoint51e_post
182    o pkg/mom_vecinv:
183      - changes related to hFac: use S/R from aim.5l_cs/code (coriolis & vort.advec)
184      - add time-ave diagnostic of vorticity advection.
185    o add diagnostic (instantaneous) of Shapiro Filter effect for T,S & UV.
186    o atmospheric geopotential: - include water vapor effect;
187                                - use p^kappa in p* scaling.
188    o land pkg: read initial state from files.
189    o AIM : add stratospheric drag in the upper level
190    
191    checkpoint51d_post
192    o change function ILNBLNK (=> last non-blank char.) to return zero
193      (instead of the string length) when the string. char is empty
194    o fix bug in dxV,dyU definition of cubed-sphere grid (ini_curvilinear_grid)
195    o modif's to restore TAMC compatibility
196      - avoid "_d" constructs in PARAMETER declarations
197      - avoid interrupting lines by comment lines
198    o Use cluster local disks for purely local I/O
199      vs. globally visible disks needed for ctrl stuff
200      (merged from ecco-branch)
201      - new active_file_loc... and mdsio_..._loc routines
202      - affected packages: autodiff, ctrl, grdchk, mdsio
203    
204    checkpoint51c_post
205    o introducing integer flag debugLevel
206      - debLevZero: suppress all output
207      - debLevA: standard
208      - debLevB: equivalent to current debugMode=.TRUE.
209    o introducing pathname variable mdsioLocalDir for mdsio
210      that can be specified at runtime
211      (relevant for cluster I/O to local disk)
212    `
213    >>>checkpoint51b_post
214    adjoint of ptracers
215    o disentangled ALLOW_PTRACERS using new ALLOW_GCHEM
216    o extended state in checkpoint_lev?, etc.
217    o alternative ctrl/cost with tr1 or ptracer
218    o new comlev1_bibj_ptracers
219    o new ptracers.flow
220    o made ptracers_forcing same as external_forcing_s
221    o added verification for adjoint with ptracers
222      - adm. grdchk fail so far
223      - tlm. grdchk OK
224      - checked tapelev/comlev recomputations: OK
225    <<<checkpoint51b_pre
226    
227    checkpoint51a_post
228    o added code for biogeochemistry package
229      - new pkgs: dic, gchem
230      - new subroutine in ptracers
231    o modify code for biogeo packages
232      - in model/src and pkg/ptracers
233    
234    checkpoint51
235    o merged improved packages from ecco-branch (ecco_c51_e34) to MAIN
236      - autodiff, ctrl, exf, grdchk, seaice
237      kept separate packages
238      - cost, ecco, obcs
239    o updating verification/internal_wave, verification/lab_sea
240      (all verif's pass on faulks.lcs.mit.edu RH7.3, g77)
241    
242    checkpoint50i_post
243    o Preparing next differentiable checkpoint and sync
244      of MAIN vs. ecco-branch
245      - 1st step: this one is differentiable
246      - 2nd step: next(! not this) checkpoint will have updated packages
247                  from ecco-branch)
248    
249    checkpoint50h_post
250    o new package "land": provide surface BC for AIM.
251    o pkg/ptracers: apply exchange to all tracers after reading a pickup.
252    o AIM: use true log-P extrapolation for near surface temp (= as in
253        F.Molteni paper) ; update aim.5l_cs output.
254    o New variable in PARM03 for more flexible pickups
255    o somewhat cleaned package initialisation sequence for
256      ctrl/ cost/ ecco/ in packages_... routines
257    
258    checkpoint50g_post
259    o merged with release1_p17 (pkg/seaice and verification/lab_sea)
260      - added SEAICE_MULTILEVEL for 8-category sea-ice thermodynamics
261      - LSR sea-ice dynamic solver moved to SouthWest B-grid location and
262        made the default because of faster convergence than ADI
263    
264    checkpoint50f_post
265    o exf totally restructured
266      - replaced all exf_set_ routines by one generic exf_set_gen.F
267        and made sure it's still differentiable
268      - split exf_getffields.F into new exf_bulkformulae.F
269      - exf_inscal_/exf_outscal_ suffixes consistent with field names
270      - updated adjoint/makefile and relevant verif. accordingly
271    
272    checkpoint50f_pre
273     o AIM: near surface temp evaluated from Pot.Temp: fixed for Part Cell ;
274          + change Evap over land. (update aim.5l_cs output)
275     o added missing .cvsignores and made uniform across expts
276     o changed configuration of tidal_basin_2d expt
277     o added pkg/debug functions for tracing code in fatal crashes
278     o tidied pkg/monitor to use MONITOR_OPTIONS.h
279     o new fn in pkg/monitor to stop model if solution grows too big
280     o removed lots of single quotes from comments
281    
282    checkpoint50e_post
283    o make KPP work with PTRACERS
284     - fix gad_calc_rhs to call new routine kpp_transport_ptr, which is
285       nearly a copy of kpp_transport_s
286     - there is no analogue to SurfaceTendencyS, so I have to use
287       gPtr(of the surface layer) instead
288    o add a new platform SunFire+mpi (SunFire 15000) to genmake
289    checkpoint50e_pre
290    
291    checkpoint50d_post
292    o change kpp output from multiple-record state files to single-record state
293      files analogous to write_state.F
294    o reduce the output frequency of cg3d-related stuff to the monitor frequency,
295      analogous to the cg2d-related output.
296    o fix small problem with in ptracers_write_checkpoint.F: len(suff)=512,
297      so that writing to internal file fn (with length 512) fails.
298    checkpoint50d_pre
299    
300    checkpoint50c_post
301    o fix problem in ini_procs.F when using MPI (was there since checkpoint48f)
302    o add monitor diagnostic of vorticity (mon_vort3.F) and potential energy.
303    o add time-average diagnostic of U*V and vertical diffusive flux for theta.
304    o bug fixed in convective adjustment diagnostic (multi-tile set-up).
305    o 4th Order Adv scheme: return to previous (c40pre7) masking near boundaries.
306    
307    checkpoint50c_pre
308    Merging from release1_p13:
309    o bug fix for pkg/seaice dynamic solver
310    o Added SEAICE_initialHEFF to pkg/seaice
311    
312    checkpoint50b_post
313    o store u*,v* in gU,V instead of in guNm1,gvNm1
314    o in order to put the momForcing out of the Adams-Bashforth:
315      move forcing & CD-scheme calls from mom_fluxform & mom_vecinv
316      to timestep.F
317    o new flag "useCDscheme" (default=F); replace guCD,gvCD by local arrays
318    o re-generate output for highly sensitive test-exp:
319       global_ocean_pressure, ideal_2D_oce, lab_sea, natl_box
320    
321    checkpoint50b_pre
322    o restore the use of momAdvection & useCoriolis flags (mom_vecinv)
323    o corrected CPP option mismatch in exf_Bulk... functions for case
324      #define ALLOW_ATM_WIND && #undef ALLOW_ATM_TEMP
325    
326    checkpoint50a_post
327    o Bug fix for merging between c50 and KPP.
328      ikey was passed from thermodynamics to kpp_calc via
329      common block rather than being recomputed in kpp_calc,
330      in contradiction with new key itdkey.
331      New key ikppkey created, and tamc.h headers updated.
332    
333    checkpoint50
334    - 2nd step of merge with ecco-branch:
335      merge changes in ecco-branch back into main trunk
336    - bug fix in find_alpha
337    - more storing in gmredi_calc_tensor.F, kpp_routines.F
338    - avoid iterative loop in ini_pressure for ALLOW_AUTODIFF_TAMC
339    - merged some sliced AD support routines
340    
341    checkpoint49
342    merged from ecco-branch:
343    o exf:
344      - Enable initialisation of forcing fields to constant
345        (runtime) values.
346      - in exf_getffields.F
347        Reduce i-/j-loop to interior domain, discarding overlaps.
348        That also fixes wrong TAF-key computations for key_1, key_2
349        with bulf formulae.
350      - exf_init.F modify #ifdef for exf_init_evap
351      - exf_getffieldrec.F, ctrl_getrec.F
352        The following INT-usages are not safe:
353          fldsecs  = int(fldsecs/fldperiod)*fldperiod
354          fldcount = int(fldsecs/fldperiod) + 1
355        and were modified.
356    o autodiff: checkpoint_lev...
357      - updated storing for bulk formulae (some arrays were missing)
358      - added state for seaice package
359      - synchronized with main branch
360    o DIVA:
361      Modif.s in
362      - the_main_loop.F
363      - the_model_main.F
364      and added cost_final_restore.F cost_final_store.F
365      o With these changes, it is possible to fully separate
366        the first forward run to compute the cost function (mdthe_main_loop)
367        and adjoint runs over individual DIVA intervals (adthe_main_loop)
368        into separate model executions.
369        This enables better tuning of DIVA to given queue sizes.
370      o Loss of cost function value in consecutive DIVA runs is
371        fixed by storing to 'costfinal' file.
372      o Appropriate call of ctrl_unpack/_pack,grdchk_main at
373        beginning/end of adjoint integration is accounted for.
374      The current changes apply to TAF-1.4.26.
375      TAF has one remaining bug, requiring one manual change
376      (see MITgcm manual).
377    o cal: synchronized between MAIN and ecco-branch
378    
379    checkpoint48i_post
380    o Changes to restore differentiability of code w.r.t. previous tag
381      (mostly adding new routines to make list and replacing
382      pressure by totPhiHyd).
383    o Updated and merged grdchk package
384      - has both ADM and TLM checks
385      - works for single- and multi-proc.
386      - output cleaned
387      - worked successfully for parallel DIVA
388    o genmake:
389      - Adding -platform=SP4
390      - Modif. for DEC Alpha (many don't have makedepend; use mkdep instead).
391    o Modif. for DIVA:
392      ctrl_unpack should not be called in intermediate DIVA interval.
393      (similar thing would apply for active files such as
394      tbar, sbar, psbar, which should not be reinitialised;
395      only relevant for ecco-branch)
396    
397    checkpoint48h_post
398  o improve "ini_p_ground" when using finite difference form for calc_phi_hyd  o improve "ini_p_ground" when using finite difference form for calc_phi_hyd
399  o Added net flux to downward flux conversion to pkg/exf/exf_getffields.F  o Added net flux to downward flux conversion to pkg/exf/exf_getffields.F
400  o Added SEAICE_initialHEFF to pkg/seaice  o Added SEAICE_initialHEFF to pkg/seaice
401    o ecco_the_model_main.F: SEAICE_WRITE_PICKUP must precede WRITE_CHECKPOINT
402    
403  checkpoint48g_post  checkpoint48g_post
404  --- EOS:  --- EOS:

Legend:
Removed from v.1.137  
changed lines
  Added in v.1.203

  ViewVC Help
Powered by ViewVC 1.1.22