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$Header: /u/gcmpack/MITgcm/doc/tag-index,v 1.88 2002/09/27 20:19:19 jmc Exp $ |
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|
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Notes on tags used in MITgcmUV |
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============================== |
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|
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checkpoint46j_post |
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o split calc_exact_eta in 2 S/R : integr_continuity & update_etaH |
8 |
o move wVel computation at the end of the time step, in S/R integr_continuity |
9 |
o create specific S/R to exchange T,S before DYNAMICS (for stagger time step) |
10 |
o update timeave pkg for wVel diagnostic. |
11 |
checkpoint46j_pre |
12 |
|
13 |
checkpoint46i_post |
14 |
o Clean up AIM package (and keep the results unchanged): |
15 |
include CPP_OPTION and use IMPLICT NONE in all routines ; |
16 |
declare all the variables _RL ; use _d 0 for all numerical constants. |
17 |
use ifdef ALLOW_AIM everywhere. And now AIM can be used with g77 ! |
18 |
|
19 |
checkpoint46h_post |
20 |
o cleaned up the use of rhoNil and rhoConst. |
21 |
- rhoNil should only appear in the LINEAR equation of state, everywhere |
22 |
else rhoNil is replaced by rhoConst, e.g. find_rho computes rho-rhoConst |
23 |
and the dynamical equations are all divided by rhoConst |
24 |
o introduced new parameter rhoConstFresh, a reference density of fresh |
25 |
water, to remove the fresh water flux's dependence on rhoNil. The default |
26 |
value is 999.8 kg/m^3 |
27 |
o cleanup up external_forcing.F and external_forcing_surf.F |
28 |
- can now be used by both OCEANIC and OCEANICP |
29 |
checkpoint46h_pre |
30 |
|
31 |
Added code to convert surface volume flux (fresh water) into |
32 |
a mass flux when using P coordinates in the ocean (OCEANICP). |
33 |
Note: It assumes you have set rho0=rhoConst=density of fresh water. |
34 |
|
35 |
checkpoint46g_post |
36 |
o Include a new diagnostic variable phiHydLow for the ocean model |
37 |
- in z-coordinates, it is the bottom pressure anomaly |
38 |
- in p-coordinates, it is the sea surface elevation |
39 |
- in both cases, these variable have global drift, reflecting the mass |
40 |
drift in z-coordinates and the volume drift in p-coordinates |
41 |
- included time averaging for phiHydLow, be aware of the drift! |
42 |
o depth-dependent computation of Bo_surf for pressure coordinates |
43 |
in the ocean (buoyancyRelation='OCEANICP') |
44 |
- requires a new routine (FIND_RHO_SCALAR) to compute density with only |
45 |
Theta, Salinity, and Pressure in the parameter list. This routine is |
46 |
presently contained in find_rho.F. This routine does not give the |
47 |
correct density for 'POLY3', which would be a z-dependent reference |
48 |
density. |
49 |
o cleaned up find_rho |
50 |
- removed obsolete 'eqn' from the parameter list. |
51 |
o added two new verification experiments: gop and goz |
52 |
(4x4 degree global ocean, 15 layers in pressure and height coordinates) |
53 |
checkpoint46g_pre |
54 |
|
55 |
checkpoint46f_post |
56 |
o Enable tangent linear (forward mode) gradient checks: |
57 |
- extended active file handling to g_... files |
58 |
- added TANGENT_SIMULATION to theSimulationMode |
59 |
- extended grdchk package accordingly |
60 |
o added tangent linear setup in verification/carbon/code_ftl |
61 |
o added adjoint setup in verification/front_relax/code_ad |
62 |
|
63 |
checkpoint46e_post |
64 |
o Added new equation of state -> MDJWF |
65 |
- EOS of McDougall et al., 2002, JAOT, submitted |
66 |
- caveat: the equation of state is only valid for a smaller (more |
67 |
realistic?) range of values than JMD95P/Z and UNESCO |
68 |
- added masks to the calculation of pressure in store_pressure |
69 |
- added more check values for density in check_eos (ini_eos.F), some of |
70 |
the old check values are out of the range of the MDJWF-eos, so don't |
71 |
expect perfect matches for those |
72 |
checkpoint46e_pre |
73 |
|
74 |
checkpoint46d_post |
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o fixed store_pressure to work with both buoyancy relation = 'OCEANIC' and |
76 |
'OCEANICP', also initialised field pressure correctly in ini_eos in the |
77 |
case of pressure coordinates. eosType='JMD95Z' in |
78 |
combination with buoyancyRelation='OCEANICP' now causes an error. |
79 |
o Changed p = pressure(i,j,k,bi,bj) to p = pressure(i,j,kRef,bi,bj) |
80 |
in find_alpha/beta. |
81 |
checkpoint46d_pre |
82 |
|
83 |
o Changed p = pressure(i,j,k,bi,bj) to p = pressure(i,j,kRef,bi,bj) |
84 |
so that JMD95Z and JMD95P give approptiate static stability in find_rho. |
85 |
|
86 |
checkpoint46c_post |
87 |
o Changes necessary for ocean in p-coordinates |
88 |
- Added new buoyancy relation = 'OCEANICP' |
89 |
- Added new parameters = gravitySign (this used to be contained inside |
90 |
the factor dRdZ which I added when we first switched to R coordinates). |
91 |
X GM/Redi is not compatible (yet) |
92 |
X bottom drag and no-slip need to be debugged. |
93 |
checkpoint46c_pre |
94 |
|
95 |
checkpoint46b_post |
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o Added new equation of state -> JMD95Z and JMD95P |
97 |
- EOS of Jackett and McDougall, 1995, JAOT |
98 |
- moved all EOS parameters into EOS.h |
99 |
- new routines ini_eos.F, store_pressure.F |
100 |
o Added UNESCO EOS, but not recommended because it requires |
101 |
in-situ temperature (see JMD95) |
102 |
o Modified formatting for knudsen2.f in utils/knudsen2 and added |
103 |
unesco.f to be used with POLY3 |
104 |
checkpoint46b_pre |
105 |
|
106 |
checkpoint46a_post |
107 |
o Added (atmospheric) pressure loading |
108 |
- new field in FFIELDS.h, etc... |
109 |
- new cpp flag ATMOSPHERIC_LOADING |
110 |
o Changed hFacC to _hFacC in calc_phi_hyd.F |
111 |
o Added SHORTWAVE_HEATING to some files for consistency |
112 |
checkpoint46a_pre |
113 |
|
114 |
checkpoint46 |
115 |
further merges from release1_p5 |
116 |
o new ctrl package |
117 |
- adopted from ECCO environment to enable optimization |
118 |
- added Eliassen Palm fluxes to controls |
119 |
o added Eliassen Palm flux controls to gradient check package |
120 |
o cost package |
121 |
- Compatible with new ctrl package |
122 |
- added Eliassen Palm cost hooks |
123 |
- modif's of existing cost functions |
124 |
o Adjoint-related bug fixes in kpp: |
125 |
- kpp_calc: sore of kpphbl avoids recomputation/call to S/R kppmix |
126 |
- kpp_routines: store of Rib avoids partial recomputation bug of TAF. |
127 |
o autodiff package |
128 |
- flow directives: |
129 |
+ new for S/R do_the_model_io |
130 |
+ enhanced for S/R checkpoint |
131 |
+ new gmredi.flow |
132 |
- Introduced CPP option ALLOW_AUTODIFF_MONITOR to |
133 |
disable adcommon.h/g_common.h by default. |
134 |
- fixed problem for adjoint of global_max |
135 |
o modified verification/carbon/ |
136 |
o New setup for adjoint of global_ocean |
137 |
o added hooks for Eliassen Palm fluxes (dynamics.F, ini_fields.F) |
138 |
o cleaned TAF keys iikey, idkey (dynamics.F, thermodynamics.F) |
139 |
o incorporated hooks for sponge layer code (external_forcing.F) |
140 |
|
141 |
checkpoint45d_post |
142 |
o import 2 fixes from release1_p5 (CG2D.h & packages_readparms.F) |
143 |
o use recip_dx*,recip_dy* instead of /dx*,/dy* in orlanski_E,W,N,S |
144 |
(affects plume_on_slope "cg2d" output) |
145 |
o add new parameter deltaTfreesurf for free-surface time stepping |
146 |
o exchange gT,gS when using staggerTimeStep & GM & Oly<4 |
147 |
o NONLIN_FRSURF: rescale gNm1 to get a better conservation with A-B |
148 |
o change phiMin in exp1 (to agree with documentation) |
149 |
o add new flags: |
150 |
- T,S forcing inside/outside Adams-Bashforth |
151 |
- turn off temp,salt advection and/or forcing |
152 |
- for each tracer, define internal flag for multiDimAdvection & A-B |
153 |
o monitor: change definition of KE to check conservation of Energy |
154 |
|
155 |
checkpoint45c_post |
156 |
o Removed f90 comments ("!") |
157 |
o Modified initialisations to enable exf package for MITgcm |
158 |
(without invoking ECCO_PACKAGE). |
159 |
o modifications to gradient check package (Martin Losch) |
160 |
- enable centered differences |
161 |
- modified format of standard output |
162 |
|
163 |
checkpoint45b_post |
164 |
o cleaned exchange calls in cg2d |
165 |
o Included CPP option ALLOW_AUTODIFF_MONITOR in forward_step |
166 |
o included CPP option SINGLE_LAYER_MODE in thermodynamics |
167 |
to configure barotropic setup (Martin Losch) |
168 |
o moved some initialisations within bi,bj loop in dynamics |
169 |
(TAF flow dependency) |
170 |
o in initialise_varia, moved call packages_init_variables |
171 |
before convective_adjustment_init |
172 |
(corresponding adjustment of TAF tape initialisation). |
173 |
o in calc_diffusivity/calc_viscosity extended domain to full overlap. |
174 |
|
175 |
checkpoint45a_post |
176 |
o compute Rho over the whole domain (extend iMin,jMin indices) |
177 |
o specific exchange for X-slice domain (case Ny=1) |
178 |
o argument futureIter of S/R obcs_calc missing in exp4 & internal_wave /code |
179 |
o solve_for_pressure : set cg2d_x to zero where OBCS are applied |
180 |
|
181 |
checkpoint44h_post = checkpoint45 |
182 |
o Fix to restore differentiability: |
183 |
place at which packages_init_variables is called in |
184 |
initialise_varia is crucial for reverse control flow. |
185 |
o modifications in GMRedi to enable stable adjoint |
186 |
(corresponding modif's in thermodynamics, dynamics) |
187 |
o added missing hook for sponge layer code in external_forcing |
188 |
o modified test cost functions |
189 |
o storing in gad_advection (plus removal of write(0,*)! |
190 |
o missing headers TR1.h added in convective_adjustment routines |
191 |
o errorMessageUnit set non-equal zero in eeboot |
192 |
(conflict on some platforms, e.g. IBM SP3) |
193 |
o modified carbon verif. |
194 |
|
195 |
checkpoint44h_pre |
196 |
o vertical grid option: allow to put the Interface at the middle between |
197 |
2 cell-centers ; replace delZ in pkg/kpp by drF. |
198 |
o GM Advective form: Tracers are advected using the residual transport (= |
199 |
Euler+GM-bolus); set param GM_AdvSeparate=T to return to previous form. |
200 |
|
201 |
checkpoint44g_post |
202 |
o fix surface correction term in multiDimAdvection (affects plume_on_slope |
203 |
results) ; ifdef missing in thermodynamics.F |
204 |
|
205 |
checkpoint44f_pre,checkpoint44f_post |
206 |
o added PTRACERS package |
207 |
This allows an arbitrary number of passive tracers to be integrated |
208 |
forward simultaneously with the dynamicaly model. |
209 |
+ Implemented so far: |
210 |
- basic forward algorithm (time-stepping, advection, diffusion, convection) |
211 |
- I/O and checkpointing |
212 |
- GM/Redi *but* using the GM/Redi coefficient of Salt |
213 |
+ Not implemented so far: |
214 |
- KPP |
215 |
- OBCS |
216 |
+ No specific example supplied (yet) but global_ocean.90x40x15 has the |
217 |
necessary data.ptracer file. Simply use -enable=ptracers and uncomment |
218 |
line in data.pkg. |
219 |
+ This package is disabled by default since it increases storage. |
220 |
|
221 |
|
222 |
o testscript: added -cleanup option |
223 |
o Shap_filt: a) new shap_filt S/R to use no-slip BC with S2 filter |
224 |
b) enable to filter 2D fields. |
225 |
|
226 |
checkpoint44e_pre,post |
227 |
o re-wrote convective adjustment to use pre-calculated weights |
228 |
Affects: model/src/convective_adjustment.F, convective_adjustment_ini.F |
229 |
Adds: model/src/convective_weights.F, convectively_mixtracer.F |
230 |
Original calls to convect() still in place. |
231 |
|
232 |
chkpt44d_pre,post |
233 |
o added missing EXCLUDE_MONITOR flags |
234 |
o changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi |
235 |
(incompatible typ in MIN/MAX expressions caused problems |
236 |
on IBM SP3) |
237 |
o in genmake added variable MAKEDEPEND |
238 |
plus resetting for case SunOS |
239 |
o added timer_stats.c routine for IBM SP3 |
240 |
o removed variables in dynamics |
241 |
!!! I forgot to create tag chkpt44d_pre !!! |
242 |
!!! But chkpt44d_pre = chkpt44c_post !!! |
243 |
|
244 |
o real fresh water flux implemented with non-linear free-surface. |
245 |
|
246 |
chkpt44c_pre,post |
247 |
o few fix (mask in shap_s2, EmPmR in external_field_load, |
248 |
USE_NATURAL_BCS in solve_for_P); |
249 |
o add arguments myIter & myTime to S/R obcs_calc & solve_for_P |
250 |
|
251 |
checkpoint44b_pre/_post |
252 |
o merge of relevant stuff from the ecco-branch: |
253 |
- genmake: removed $S64 overwrite for case SunOS |
254 |
- pkg/exf: update and corrections for field swapping and obcs |
255 |
- pkg/ecco: parameter lists for the_model_main, the_main_loop |
256 |
harmonized between ECCO and MITgcm |
257 |
- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice |
258 |
updated checkpointing_lev... lists for obcs |
259 |
- model/src: minor changes in forward_step, plot_field |
260 |
added directive for divided adjoint in the_main_loop |
261 |
- pkg/mdsio: added mdsio_gl_slice |
262 |
|
263 |
o check parameters & config (chkpt44a_pre,post) |
264 |
o OBC and NonLin_FrSurf. |
265 |
|
266 |
checkpoint44 |
267 |
o fix bug in mom_vi_del2uv |
268 |
o select when filters are applied ; add options to zonal_filter (data.zonfilt) |
269 |
o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection) |
270 |
o update AIM experiments (NCEP input files) |
271 |
o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf) |
272 |
o added some stuff for AD |
273 |
|
274 |
checkpoint43 |
275 |
o added two new advection tests |
276 |
o added global 4x4 degree ocean test |
277 |
o added test of H&S94 with free surface on cube |
278 |
o some final mods for gradient check, adjoint,... |
279 |
|
280 |
checkpoint42 |
281 |
Fixed AD-related problems: |
282 |
o Store directives up-to-date with re-arranged Adams-Bashforth |
283 |
(mainly thermodynamics.F) |
284 |
o New store directives for multi-dim. advection schemes |
285 |
* new CPP flag ALLOW_MULTI_DIM_ADVECTION |
286 |
* new common block and key passkey |
287 |
(mainly gad_advection.F) |
288 |
o Modified store directives for split of dynamics/thermodynamics |
289 |
for the case ALLOW_KPP |
290 |
o Cleaned argument list for timestep_tracer.F |
291 |
|
292 |
checkpoint41 |
293 |
o re-formatted/added comments in prologues of key subroutines |
294 |
to work with protex |
295 |
|
296 |
checkpoint40 |
297 |
o moved calc_gs, calc_gt and calc_tr1 back to model/src |
298 |
o added FLT (floats) package from Arne along with demo. experiment |
299 |
o re-arranged Adams-Bashforth scheme for tracers to allow easier |
300 |
implementation of forward-in-time forcing terms |
301 |
o more mods for non-linear free-surface including new variable |
302 |
o modified multi-dim method to work on cube |
303 |
o bug fix in KPP (from DM) |
304 |
|
305 |
checkpoint40pre9 |
306 |
o added DST advection schemes |
307 |
o fix MPI bug on SGI's |
308 |
o modifications for non-linear free-surface |
309 |
o fixed conditionals for fixed flow/passive tracer only mode |
310 |
o added tension/strain form of stress tensor |
311 |
o changes to commenting of arguments for TAF/TAMC |
312 |
o added/updated many matlab scripts |
313 |
o added multi-dimensional advection method for tracers |
314 |
|
315 |
checkpoint40pre8 |
316 |
o new package rw/ |
317 |
Added method for dumping intermediate local arrays: |
318 |
mdsio_writetile - same as mdsio_writefield except works from inside |
319 |
bi,bj loop |
320 |
mdsio_writelocal - same as mdsio_writetile except works for local |
321 |
arrays |
322 |
write_local_r? - higher-level wrapper for mdsio_writelocal |
323 |
Controlled by diagFreq. Defaults to zero (ie. no dumps) |
324 |
Example given at end of mom_vecinv.F that dumps some local arrays. |
325 |
o replaced calc_mom_rhs.F by mom_fluxform.F/mom_vecinc.F to |
326 |
control flux-form versus vector invariant code. |
327 |
Switch is runtime flag vectorInvariantMomentum (defaults to false) |
328 |
or genmake -DISABLE ... |
329 |
o TAMC-related update to cope with mom_fluxform.F/mom_vecinc.F |
330 |
(additional storing is now needed for case vecinv; |
331 |
currently nothing implemented to switch this storing off |
332 |
in case fluxform is used since no CPP flag available). |
333 |
|
334 |
checkpoint40pre7 |
335 |
o bug fix in dynamics.F |
336 |
calc_viscosity called before k=1,Nr loop. |
337 |
o added some #ifdef's ALLOW_PASSIVE_TRACER |
338 |
o cleaned initialisations in ctrl_map_ini |
339 |
related to TAF |
340 |
|
341 |
checkpoint40pre6 |
342 |
o split dynamics into thermodynamics & dynamics |
343 |
o corresponding split of calc_diffusivity into |
344 |
calc_diffusivity, calc_viscosity |
345 |
(kpp_calc_diff, kpp_calc_visc). |
346 |
o Added diffkr, kapgm to control variables |
347 |
o bug fix in gmredi_slope_limit for ldd97 |
348 |
|
349 |
checkpoint40pre5 |
350 |
o proper initialization of Adams-Bashforth time stepping |
351 |
+ uses forward step for very first step of model (iter=0) |
352 |
o re-generated *all* output since almost all output is modified by this |
353 |
change (sorry but we've been putting this one off for about 2 years) |
354 |
+ natl_box, aim.5l_Equatorial_Channel and aim.5l_zon-ave were |
355 |
*not* regenerated since they are already out of date and I don't |
356 |
want to create the impression that they are suddenly working. |
357 |
o removed KAP stuff for DEC's |
358 |
o modified/added many .cvsignore files in */code and */input |
359 |
o added new expt "solid-body.cs-32x32x1" |
360 |
+ this uses an alternative form of ini_curvilinear_grid.F which |
361 |
is not necessarily any better than the current one... |
362 |
|
363 |
checkpoint40pre4 |
364 |
o added re-initialisations of utrans,vtrans,rtrans in |
365 |
calc_common_factors which are crucial for TAF. |
366 |
o extended iMin,jMin range for calc_common_factors, |
367 |
calc_diffusivity |
368 |
o added option ALLOW_PASSIVE_TRACER |
369 |
o a few minor updates and fixes |
370 |
|
371 |
checkpoint40pre3 |
372 |
o created calc_gtr1.F for gad package |
373 |
o split the_main_loop and re-introduced forward_step |
374 |
o some recomputations of nIter0 for TAMC |
375 |
|
376 |
checkpoint40pre2 |
377 |
o Updated to latest branch of AJA, JMC |
378 |
o Added gradient check package |
379 |
o Added routines for passive tracer handling |
380 |
o Added carbon sequestration sensitivity experiment |
381 |
|
382 |
checkpoint39 |
383 |
o Modifications and fixes to support TAMC |
384 |
(mainly missing or wrong directives) |
385 |
o Corrected common blocks when fooling TAMC to produce adjoint I/O |
386 |
in addummy_in_stepping |
387 |
o Updated verification/vero/ (bug fixes in code/, correct pickups in input/) |
388 |
o Enabled "sliced" (xz-,yz-) exchanges, needed for obcs. |
389 |
o Included following packages: |
390 |
cal: calendar |
391 |
exf: external forcing |
392 |
ecco: essential routines to control use of cal, exf |
393 |
(NB: this is not the full ECCO environment) |
394 |
o disabled some packages by default in genmake |
395 |
|
396 |
checkpoint38 |
397 |
o see notes_c37_adj.txt |
398 |
o corrected wrong layer index in external_forcing_t |
399 |
o replaced the_main_loop/forward_step by the_main_loop |
400 |
o removed forceoutput from write_state |
401 |
(replaced criteria for initial/final state) |
402 |
o added runtime flag for pre-C35 pickups: usePickupBeforeC35 |
403 |
|
404 |
checkpoint37 |
405 |
o mdsio.F routine split and packaged in pkg/mdsio |
406 |
(mdsio.F and mdsio_gl.F still exist in eesupp/src but are not |
407 |
used unless genmake -disable=mdsio) |
408 |
o allow a more precise surface-geopotential gradient for the atmosphere |
409 |
taking into account the change in space of Alpha (=1/rho) at the surface. |
410 |
o variable "etaN" (replace cg2d_x) is the surface R-anomaly [r unit] |
411 |
(ocean: sea surface height [m] / atmos: surface pressure anomaly [Pa]) |
412 |
o Change units: Phi_Hydrostatic (=phiHyd), Phi_Surface(=cg2d_x) and |
413 |
Phi_NonHydrostatic (=cg3d_x), all have now the dimension of a potential |
414 |
[m2/s2] (pressure/rhoConst in the ocean ; Geo-Potential in the atmosphere). |
415 |
o Time-Average diagnostics defined as a pseudo package "timeave". |
416 |
o pickup files : old pickup (before c35) did not work with new code (c35 |
417 |
and after) unless activating 2 commented lines in initialise-varia. |
418 |
o Non-Hydrostatic pickup file Pb fixed. |
419 |
o bug with Rigid-lid version (since c35) fixed. |
420 |
|
421 |
checkpoint36 |
422 |
o implement Crank-Nickelson barotropic time-stepping |
423 |
o recover Time-Average diagnostics |
424 |
o fix Pb in checkpoint (PR#19) |
425 |
o AIM become a standard package ; clean unused CPP_kees |
426 |
|
427 |
checkpoint35 |
428 |
o subtantial rewrite of dynamics.f |
429 |
o allows staggered time-stepping |
430 |
o packaged obcs, aim (Atmospheric Physics), zonal_filt, shap_filt |
431 |
o added bottom drag (linear + quadratic) |
432 |
|
433 |
checkpoint34 |
434 |
o Modified exchange routines for correct reverse simulation. |
435 |
o Added verification output to comply with bug fix in impldiff.F |
436 |
as of c33 (exp2, natl_box). |
437 |
o Corrected store directives in dynamics.F |
438 |
o Corrected array boundaries in impldiff.F |
439 |
o Corrected array dimensions in gmredi. |
440 |
Added temporary scalars to avoid storage by TAMC (gmredi, kpp). |
441 |
o Added routine GLOBAL_SUM_INT to global_sum.F |
442 |
o Added mdsio_gl.F for ECCO purposes. |
443 |
|
444 |
checkpoint33 |
445 |
o Fixed bug in lower BC in impldiff.F |
446 |
o Fixed confusion about units of forcing arrays in FFIELDS.h |
447 |
namely Fu,Fv,Qnet,Qsw,EmPmR: |
448 |
- Removed verification/natl_box/code/external_fields_scale.F |
449 |
(did not differ from that in model/src) |
450 |
- Changed units of fu,fv,Qnet,Qsw,EmPmR back to proper units |
451 |
(see FFIELDS.h for description) |
452 |
- Scale fu,fv,Qnet,Qsw,EmPmR when used in external_forcing_surf.F, |
453 |
kpp_calc.F and kpp_transport_t.F |
454 |
- Removed model/src/external_fields_scale.F and calls to it |
455 |
- verification/natl_box uses flux data with "atmospheric" sign so |
456 |
a special version of external_fields_load.F is used to |
457 |
change the data as it's read in. This way, the arrays |
458 |
have the right units and signs at all times tha a user could |
459 |
possibly use them. |
460 |
o Corrected genmake to delete a temporary file during configuration |
461 |
|
462 |
checkpoint32 |
463 |
o Scaling of forcing fields moved from external_forcing.F to |
464 |
external_fields_scale.F, called directly after loading fields. |
465 |
o Surface relaxation terms added to surface tendency fields in |
466 |
extra subroutine. |
467 |
o impldiff.F changed to avoid storing by TAMC of huge intermediate |
468 |
fields. |
469 |
o Changes in GMRedi to comply with packaging structure. |
470 |
o Modifications and bug fixes in KPP package. |
471 |
o Verification experiment for KPP added (verification/nat_box/) |
472 |
|
473 |
checkpoint31 |
474 |
o Packages interface brought in line with defined standard |
475 |
-> new routines packages_...F |
476 |
-> changes in initialise_fixed.F, initialise_varia.F |
477 |
-> enables initialisation interface for ECCO package |
478 |
o Rescaling of external forcing fields immediately after read |
479 |
(removed from external_forcing.F) |
480 |
-> new: surface_fields_scale.F |
481 |
-> affects ini_foorcing.F, external_fields_load.F |
482 |
o Computation of surface tendencies before tendency updates. |
483 |
-> new: external_forcing_surf.F |
484 |
o Change of variable names useGMRedi, useKPP, useECCO |
485 |
o Further changes in dynamics.F, impldiff.F for TAMC |
486 |
o Tested for experiments 0, 2, 4. |
487 |
- not yet tested for GMRedi. |
488 |
- not yet tested for KPP. |
489 |
|
490 |
checkpoint30 |
491 |
o Updates for OBCs |
492 |
o New experiment for test OBCs (internal_wave) |
493 |
o New output.txt in verification/exp4/results/ |
494 |
o Updates for KPP: calculation of viscosity corrected, new variables |
495 |
kpp_dumpFreq and kpp_taveFreq |
496 |
o CPP'd calls to system routines for TARGET_CRAY_VECTOR (P.H.) |
497 |
and entry for T90 in genmake |
498 |
|
499 |
checkpoint29 |
500 |
o packaged KPP and GM/Redi |
501 |
|
502 |
checkpoint28 |
503 |
o Corrected initialization of hFacMin for difference vertical coordinates |
504 |
o Modified calculation of partial cell thickness to more robust algorithm |
505 |
o config_summary.F: replaced write_1D_... by write_0D_... |
506 |
read_write.F: added subroutines write_0D_... |
507 |
o routines calc_common_factors, calc_gs, calc_gt, calc_phi_hyd, find_rho: |
508 |
included some initialisations required for TAMC. |
509 |
o routine calc_isoslopes: modified sqrt computation to make it |
510 |
differentiable for zero argument. |
511 |
o routines dynamics, impldiff: |
512 |
included store directives and tape key computations required for TAMC. |
513 |
o ALL TAMC related changes are between ifdef ALLOW_AUTODIFF_TAMC |
514 |
|
515 |
checkpoint27 |
516 |
o fixed calc_isoslopes() to so that cancellation of terms in tensor |
517 |
formulation works properly with variable resolution. |
518 |
o restructured the calling tree between the_model_main() and dynamics() |
519 |
o split initialise() into initialise_fixed() and initialise_varia() |
520 |
o introduced initialization file pSurfInitFile for free surface (cg2d_x) |
521 |
in new routine ini_psurf() |
522 |
|
523 |
checkpoint26 |
524 |
o moved some #ifdef in optional routines to encompass everything |
525 |
except the argument declarations. This was using up some memory. |
526 |
o fixed macros like _ADT to work with both versions of Linux cpp |
527 |
o cleaned up some unused and uninitialized variables |
528 |
(helps when debugging with strict compile options) |
529 |
o split up CPP_EEOPTIONS.h into options and macros |
530 |
(macros are now in eesupp/inc/CPP_EEMACROS.h) |
531 |
o patch for 2 processor JAM mode |
532 |
|
533 |
checkpoint25 |
534 |
o updates for OBCs and NH |
535 |
o dramatically reduced memory usage |
536 |
o added "JAM" routines for use on Artic network |
537 |
o parameterization of convection by implicit vertical diffusion |
538 |
o added a diagnostic of convective index |
539 |
o moved call to calc_divg_hat() from dynamics() to solve_for_pressure() |
540 |
(this is was partly for OBCs and NH but also in anticipation of |
541 |
an explicit free-surface option) |
542 |
o initial state input files for U and V |
543 |
|
544 |
checkpoint24 |
545 |
o Removed some spurious "REAL"s |
546 |
o Updated KPP to latest version from JPL |
547 |
o Added a COS(latitude) in horizontal viscosity |
548 |
|
549 |
checkpoint23 |
550 |
o Added del^4 diffusion for salt and temperature |
551 |
o Multiple minor fixes (implicit none's, arguments to global_sum, etc.) |
552 |
|
553 |
checkpoint22 |
554 |
o Made many small changes: implicit none, format(i5), etc... |
555 |
o Introduced KPP mixing scheme (compiles and runs but *not* tested) |
556 |
|
557 |
checkpoint21 |
558 |
o Introduced new I/O package that supports direct-access records (mdsio.F) |
559 |
o Split-up mid-level I/O routines |
560 |
o Updated input data for experiments 0,1,2,4 and 5 |
561 |
o Finally removed the genmake.* scripts (everyone seems happy with genmake) |
562 |
|
563 |
checkpoint20 |
564 |
o Tidied up open-boundaries some more |
565 |
o Added non-hydrostatic code |
566 |
o Fixed some input data |
567 |
o Modified MPI start-up to work in "coupled" context. |
568 |
|
569 |
checkpoint19 |
570 |
o Tidied up directory structure for verification experiments. |
571 |
o Added new code for open boundaries. |
572 |
o Corrected advective terms near boundaries. |
573 |
o Added CPP flag for "old UV" geometry and corrected spherical geometry. |
574 |
o Implemented free-slip/no-slip BCs and del^4 dissipation. |
575 |
o Split default parameters out of ini_parms.F into set_defaults.F. |
576 |
|
577 |
checkpoint18 |
578 |
o Further changes for optional code generation with |
579 |
CPP - ugh! |
580 |
|
581 |
checkpoint17 |
582 |
o Beginning to incorporating modularity |
583 |
for supporting atmos. and ocean configs. |
584 |
o Small changes for TAMC complinace |
585 |
o New ultra simple test case. Barotropic box |
586 |
configuration "exp0". |
587 |
|
588 |
checkpoint16 |
589 |
o Minor changes to exchange routines to support |
590 |
accumulation in reverse mode. Adjoint of an |
591 |
assignment is an addition. |
592 |
o Changes to support compilation by TAMC (LR(1) |
593 |
syntax) and by g77 under Linux ( 72 character |
594 |
limit ). |
595 |
|
596 |
checkpoint15 |
597 |
Rewrote exchange routines to allow |
598 |
o General tile <-> tile connectivity. |
599 |
o TAMC reverse mode flag ( is this really needed? ) |
600 |
o Variable width overlap and exchange region widths. |
601 |
o Hooks for sharing data via DMA, Arctic, Memory Channel, |
602 |
shmput/shmget, VIA, SYSV shmem and every other cool |
603 |
communication method. |
604 |
|
605 |
checkpoint14 |
606 |
Consistent isomorphism chages made. These allow dynamical core |
607 |
to support both pressure and meters as a vertical coordinate. |
608 |
|
609 |
checkpoint13 |
610 |
Release which corrects global_max problem and a couple |
611 |
of KGM time-averaging diagnostic errors. Also contains |
612 |
a double-gyre experiment setup as well as the baseline |
613 |
4 degree global template. The double gyre template is |
614 |
organised to allow it to be applied automatically to |
615 |
the baseline configuration. |
616 |
|
617 |
branch-point-rdot |
618 |
A few tidy-ups have been made bt the real point of this |
619 |
check-point (excuse the pun) is to allow a branch to be |
620 |
made for the purposes of adding the rDot alterations. |
621 |
I don't want to commit the rDot to the main-trunk until |
622 |
we've actually tested it... |
623 |
|
624 |
checkpoint12 |
625 |
Tidy up and added generic genmake script (formerly |
626 |
configure script). |
627 |
Released to testers. |
628 |
|
629 |
checkpoint11 |
630 |
Re-arranged initialise() and introduced ini_vertical_grid() |
631 |
and ini_masks_etc(). |
632 |
|
633 |
checkpoint10 |
634 |
Introduced the configure script. |
635 |
Separated out the diags package. |
636 |
Added template for writing time-averages of tile/intermediate quantities. |
637 |
Updated SIZE.h in exp2 and made the data big-endian. |
638 |
|
639 |
checkpoint9 |
640 |
MPI fix. Filename changes (meta/data). salbin*y stuff. |
641 |
General tidy-up. |
642 |
SST.bin SSS.bin added to verification/exp2 |
643 |
|
644 |
checkpoint8 |
645 |
Inludes time-dependant forcing and time-averaging. |
646 |
Works at 4x4 and 2.8125x2.8125 global |
647 |
|
648 |
checkpoint7-4degree-ref |
649 |
Branch from checkpoint7. Released for application to |
650 |
global modeling and general modeling - process studies, regional |
651 |
model etc.. |
652 |
Configured for verification/exp2 - 4 degree global, two process. |
653 |
|
654 |
checkpoint7 |
655 |
Created by cnh |
656 |
Simple 4 degree global simulation |
657 |
configuration. |
658 |
Includes climatological wind, |
659 |
hydrography, bathymetry etc |
660 |
Does not include Heat Flux and E-P |
661 |
|
662 |
checkpoint6 |
663 |
Created by cnh |
664 |
merged checkpoint5 with CD and |
665 |
spherical polar code. |
666 |
Still some problems with GM Redi |
667 |
abd full topography. |
668 |
|
669 |
checkpoint5 |
670 |
Created by AJA |
671 |
contains updates to GM Redi |
672 |
and reordered timestepping loop |
673 |
for Implicit Diffusion. |
674 |
|
675 |
checkpoint4 |
676 |
Created by cnh |
677 |
Contains memory saving macros ( _rdxc etc..) for when |
678 |
grid variations are limited. |
679 |
Contains polynomial coeffs for EOS and knudsen program |
680 |
for generation. |
681 |
|
682 |
checkpoint3 |
683 |
Created by cnh |
684 |
Added extra flags for runtime options |
685 |
Added this file |
686 |
Added implicit free-surface |
687 |
Added pre-conditioner |
688 |
Put compare01 into repository ( compare01/... ) |
689 |
Put data and eedata into repository ( verification/exp1 ) |
690 |
|
691 |
checkpoint2 |
692 |
Created by AJA |
693 |
Added GM/Redi |
694 |
|
695 |
checkpoint1 |
696 |
Created by AJA |
697 |
Restructured kloop in dynamics.F |
698 |
Added non-linear EOS |
699 |
|
700 |
baseline |
701 |
Original checked in code |