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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o restore the use of momAdvection & useCoriolis flags (mom_vecinv) |
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o corrected CPP option mismatch in exf_Bulk... functions for case |
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#define ALLOW_ATM_WIND && #undef ALLOW_ATM_TEMP |
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checkpoint50a_post |
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o Bug fix for merging between c50 and KPP. |
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ikey was passed from thermodynamics to kpp_calc via |
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common block rather than being recomputed in kpp_calc, |
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in contradiction with new key itdkey. |
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New key ikppkey created, and tamc.h headers updated. |
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checkpoint50 |
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- 2nd step of merge with ecco-branch: |
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merge changes in ecco-branch back into main trunk |
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- bug fix in find_alpha |
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- more storing in gmredi_calc_tensor.F, kpp_routines.F |
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- avoid iterative loop in ini_pressure for ALLOW_AUTODIFF_TAMC |
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- merged some sliced AD support routines |
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checkpoint49 |
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merged from ecco-branch: |
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o exf: |
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- Enable initialisation of forcing fields to constant |
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(runtime) values. |
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- in exf_getffields.F |
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Reduce i-/j-loop to interior domain, discarding overlaps. |
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That also fixes wrong TAF-key computations for key_1, key_2 |
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with bulf formulae. |
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- exf_init.F modify #ifdef for exf_init_evap |
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- exf_getffieldrec.F, ctrl_getrec.F |
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The following INT-usages are not safe: |
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fldsecs = int(fldsecs/fldperiod)*fldperiod |
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fldcount = int(fldsecs/fldperiod) + 1 |
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and were modified. |
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o autodiff: checkpoint_lev... |
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- updated storing for bulk formulae (some arrays were missing) |
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- added state for seaice package |
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- synchronized with main branch |
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o DIVA: |
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Modif.s in |
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- the_main_loop.F |
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- the_model_main.F |
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and added cost_final_restore.F cost_final_store.F |
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o With these changes, it is possible to fully separate |
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the first forward run to compute the cost function (mdthe_main_loop) |
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and adjoint runs over individual DIVA intervals (adthe_main_loop) |
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into separate model executions. |
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This enables better tuning of DIVA to given queue sizes. |
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o Loss of cost function value in consecutive DIVA runs is |
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fixed by storing to 'costfinal' file. |
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o Appropriate call of ctrl_unpack/_pack,grdchk_main at |
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beginning/end of adjoint integration is accounted for. |
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The current changes apply to TAF-1.4.26. |
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TAF has one remaining bug, requiring one manual change |
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(see MITgcm manual). |
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o cal: synchronized between MAIN and ecco-branch |
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checkpoint48i_post |
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o Changes to restore differentiability of code w.r.t. previous tag |
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(mostly adding new routines to make list and replacing |
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pressure by totPhiHyd). |
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o Updated and merged grdchk package |
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- has both ADM and TLM checks |
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- works for single- and multi-proc. |
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- output cleaned |
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- worked successfully for parallel DIVA |
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o genmake: |
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- Adding -platform=SP4 |
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- Modif. for DEC Alpha (many don't have makedepend; use mkdep instead). |
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o Modif. for DIVA: |
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ctrl_unpack should not be called in intermediate DIVA interval. |
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(similar thing would apply for active files such as |
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tbar, sbar, psbar, which should not be reinitialised; |
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only relevant for ecco-branch) |
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checkpoint48h_post |
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o improve "ini_p_ground" when using finite difference form for calc_phi_hyd |
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o Added net flux to downward flux conversion to pkg/exf/exf_getffields.F |
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o Added SEAICE_initialHEFF to pkg/seaice |
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o ecco_the_model_main.F: SEAICE_WRITE_PICKUP must precede WRITE_CHECKPOINT |
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checkpoint48g_post |
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--- EOS: |
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o compute locally the pressure for use in EOS: UNESCO, JMD95P, MDJWF |
| 90 |
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store total Potential in totPhyHyd for diagnostics & EOS. |
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o fix restart and overlap Pb when using Z-coord and EOS funct. of P |
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--- Pressure/geopotential gradient: |
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o use Ro_surf & R_low instead of hFac in cal_phi_hyd: |
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o NLFS + p-coord.: eta*Alpha' is not longer lagging 1.time-step behind |
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( changes results of global_ocean_pressure ) |
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o NLFS + z-coord.: add eta*Rho' contribution. |
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o accurate phiHyd when using interface-W at the middle between 2 centers |
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( changes results of ideal_2D_oce ) |
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o includes r* 2nd term in potential gradient. |
| 100 |
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checkpoint48f_post |
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Merging from release1_p12: |
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o Modifications for using pkg/exf with pkg/seaice |
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- improved description of the various forcing configurations |
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- added basic radiation bulk formulae to pkg/exf |
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- units/sign fix for evap computation in exf_getffields.F |
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- updated verification/global_with_exf/results/output.txt |
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o Added pkg/sbo for computing IERS Special Bureau for the Oceans |
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(SBO) core products, including oceanic mass, center-of-mass, |
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angular, and bottom pressure (see pkg/sbo/README.sbo). |
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o Lower bound for viscosity/diffusivity in pkg/kpp/kpp_routines.F |
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to avoid negative values in shallow regions. |
| 113 |
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- updated verification/natl_box/results/output.txt |
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- updated verification/lab_sea/results/output.txt |
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o MPI gather, scatter: eesupp/src/gather_2d.F and scatter_2d.F |
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o Added useSingleCpuIO option (see PARAMS.h). |
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o Updated useSingleCpuIO option in mdsio_writefield.F to |
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work with multi-field files, e.g., for single-file pickup. |
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o pkg/seaice: |
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- bug fix in growth.F: QNET for no shortwave case |
| 121 |
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- added HeffFile for specifying initial sea-ice thickness |
| 122 |
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- changed SEAICE_EXTERNAL_FLUXES wind stress implementation |
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o Added missing /* */ to CPP comments in pkg/seaice, pkg/exf, |
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kpp_transport_t.F, forward_step.F, and the_main_loop.F |
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o pkg/seaice: |
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- adjoint-friendly modifications |
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- added a SEAICE_WRITE_PICKUP at end of the_model_main.F |
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checkpoint48e_post |
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o New S/R for diagnostic of bottom pressure (phi0surf was missing in c48d_post) |
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o dynamics: change definition of computational domain & adapt mom_fluxform |
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accordingly ; when viscA4=0, allows to run the dynamics with Olx=Oly=2. |
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o following exp works with Olx=Oly=2 (and pass through checkbounds option): |
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adjust_nlfs.cs-32x32x1 adjustment.128x64x1 adjustment.cs-32x32x1 |
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exp0 exp1 exp2 exp4 exp5 hs94.cs-32x32x5 hs94.128x64x5 hs94.1x64x5 |
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global_ocean.90x40x15 global_with_exf global_ocean_pressure |
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inverted_barometer solid-body.cs-32x32x1 |
| 138 |
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(high order AdvScheme and/or multiDimAd works with Olx=Oly=2 ? not sure) |
| 139 |
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| 140 |
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checkpoint48d_post |
| 141 |
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o in preparation for r*: |
| 142 |
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a) use pre-computed gradient of hydrostatic potential: |
| 143 |
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changes in timestep.F & mom_cdscheme.F affects results of ideal_2D_oce |
| 144 |
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b) move phi0surf from calc_phi_hyd to calc_grad_phi_hyd: |
| 145 |
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=> affects results of glob_oce_pressure (different truncation error) |
| 146 |
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update output.txt of ideal_2D_oce & global_ocean_pressure |
| 147 |
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| 148 |
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checkpoint48d_pre |
| 149 |
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o in preparation for r*: |
| 150 |
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new S/R (calc_grad_phi_hyd.F) to compute Hydrostatic potential gradient. |
| 151 |
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pass the 2 comp. of the grad. as arguments to momentum S/R. |
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but for the moment, only used if it does not change the results. |
| 153 |
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o add finite volume form of calc_phi_hyd for buoyancyRelation OCEANIC & OCEANICP |
| 154 |
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| 155 |
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checkpoint48c_post |
| 156 |
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Modifications in treatment of initial flux forcing controls |
| 157 |
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to avoid extra storing of flux fields. |
| 158 |
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| 159 |
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checkpoint48c_pre |
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o Added tidal_basin_2d experiment (currently 1D!) |
| 161 |
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o can use r* Coordinate with OBC (but Orlanski Rad. BC not yet implemented) |
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checkpoint48b_post |
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o r* coordinate added in #ifdef NONLIN_FRSURF block. |
o r* coordinate added in #ifdef NONLIN_FRSURF block. |
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(modification to pressure gradient not yet implemented) |
(modification to pressure gradient not yet implemented) |
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o mom_fluxform: new S/R mom_calc_rtrans.F computes vertical transports |
o mom_fluxform: new S/R mom_calc_rtrans.F computes vertical transports |
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