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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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checkpoint40pre9 |
7 |
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o added DST advection schemes |
8 |
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o fix MPI bug on SGI's |
9 |
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o modifications for non-linear free-surface |
10 |
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o fixed conditionals for fixed flow/passive tracer only mode |
11 |
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o added tension/strain form of stress tensor |
12 |
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o changes to commenting of arguments for TAF/TAMC |
13 |
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o added/updated many matlab scripts |
14 |
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15 |
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checkpoint40pre8 |
16 |
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o new package rw/ |
17 |
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Added method for dumping intermediate local arrays: |
18 |
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mdsio_writetile - same as mdsio_writefield except works from inside |
19 |
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bi,bj loop |
20 |
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mdsio_writelocal - same as mdsio_writetile except works for local |
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arrays |
22 |
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write_local_r? - higher-level wrapper for mdsio_writelocal |
23 |
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Controlled by diagFreq. Defaults to zero (ie. no dumps) |
24 |
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Example given at end of mom_vecinv.F that dumps some local arrays. |
25 |
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o replaced calc_mom_rhs.F by mom_fluxform.F/mom_vecinc.F to |
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control flux-form versus vector invariant code. |
27 |
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Switch is runtime flag vectorInvariantMomentum (defaults to false) |
28 |
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or genmake -DISABLE ... |
29 |
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o TAMC-related update to cope with mom_fluxform.F/mom_vecinc.F |
30 |
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(additional storing is now needed for case vecinv; |
31 |
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currently nothing implemented to switch this storing off |
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in case fluxform is used since no CPP flag available). |
33 |
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34 |
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checkpoint40pre7 |
35 |
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o bug fix in dynamics.F |
36 |
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calc_viscosity called before k=1,Nr loop. |
37 |
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o added some #ifdef's ALLOW_PASSIVE_TRACER |
38 |
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o cleaned initialisations in ctrl_map_ini |
39 |
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related to TAF |
40 |
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41 |
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checkpoint40pre6 |
42 |
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o split dynamics into thermodynamics & dynamics |
43 |
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o corresponding split of calc_diffusivity into |
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calc_diffusivity, calc_viscosity |
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(kpp_calc_diff, kpp_calc_visc). |
46 |
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o Added diffkr, kapgm to control variables |
47 |
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o bug fix in gmredi_slope_limit for ldd97 |
48 |
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49 |
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checkpoint40pre5 |
50 |
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o proper initialization of Adams-Bashforth time stepping |
51 |
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+ uses forward step for very first step of model (iter=0) |
52 |
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o re-generated *all* output since almost all output is modified by this |
53 |
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change (sorry but we've been putting this one off for about 2 years) |
54 |
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+ natl_box, aim.5l_Equatorial_Channel and aim.5l_zon-ave were |
55 |
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*not* regenerated since they are already out of date and I don't |
56 |
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want to create the impression that they are suddenly working. |
57 |
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o removed KAP stuff for DEC's |
58 |
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o modified/added many .cvsignore files in */code and */input |
59 |
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o added new expt "solid-body.cs-32x32x1" |
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+ this uses an alternative form of ini_curvilinear_grid.F which |
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is not necessarily any better than the current one... |
62 |
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63 |
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checkpoint40pre4 |
64 |
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o added re-initialisations of utrans,vtrans,rtrans in |
65 |
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calc_common_factors which are crucial for TAF. |
66 |
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o extended iMin,jMin range for calc_common_factors, |
67 |
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calc_diffusivity |
68 |
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o added option ALLOW_PASSIVE_TRACER |
69 |
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o a few minor updates and fixes |
70 |
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71 |
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checkpoint40pre3 |
72 |
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o created calc_gtr1.F for gad package |
73 |
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o split the_main_loop and re-introduced forward_step |
74 |
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o some recomputations of nIter0 for TAMC |
75 |
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76 |
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checkpoint40pre2 |
77 |
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o Updated to latest branch of AJA, JMC |
78 |
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o Added gradient check package |
79 |
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o Added routines for passive tracer handling |
80 |
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o Added carbon sequestration sensitivity experiment |
81 |
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82 |
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checkpoint39 |
83 |
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o Modifications and fixes to support TAMC |
84 |
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(mainly missing or wrong directives) |
85 |
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o Corrected common blocks when fooling TAMC to produce adjoint I/O |
86 |
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in addummy_in_stepping |
87 |
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o Updated verification/vero/ (bug fixes in code/, correct pickups in input/) |
88 |
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o Enabled "sliced" (xz-,yz-) exchanges, needed for obcs. |
89 |
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o Included following packages: |
90 |
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cal: calendar |
91 |
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exf: external forcing |
92 |
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ecco: essential routines to control use of cal, exf |
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(NB: this is not the full ECCO environment) |
94 |
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o disabled some packages by default in genmake |
95 |
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96 |
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checkpoint38 |
97 |
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o see notes_c37_adj.txt |
98 |
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o corrected wrong layer index in external_forcing_t |
99 |
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o replaced the_main_loop/forward_step by the_main_loop |
100 |
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o removed forceoutput from write_state |
101 |
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(replaced criteria for initial/final state) |
102 |
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o added runtime flag for pre-C35 pickups: usePickupBeforeC35 |
103 |
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104 |
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checkpoint37 |
105 |
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o mdsio.F routine split and packaged in pkg/mdsio |
106 |
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(mdsio.F and mdsio_gl.F still exist in eesupp/src but are not |
107 |
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used unless genmake -disable=mdsio) |
108 |
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o allow a more precise surface-geopotential gradient for the atmosphere |
109 |
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taking into account the change in space of Alpha (=1/rho) at the surface. |
110 |
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o variable "etaN" (replace cg2d_x) is the surface R-anomaly [r unit] |
111 |
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(ocean: sea surface height [m] / atmos: surface pressure anomaly [Pa]) |
112 |
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o Change units: Phi_Hydrostatic (=phiHyd), Phi_Surface(=cg2d_x) and |
113 |
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Phi_NonHydrostatic (=cg3d_x), all have now the dimension of a potential |
114 |
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[m2/s2] (pressure/rhoConst in the ocean ; Geo-Potential in the atmosphere). |
115 |
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o Time-Average diagnostics defined as a pseudo package "timeave". |
116 |
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o pickup files : old pickup (before c35) did not work with new code (c35 |
117 |
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and after) unless activating 2 commented lines in initialise-varia. |
118 |
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o Non-Hydrostatic pickup file Pb fixed. |
119 |
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o bug with Rigid-lid version (since c35) fixed. |
120 |
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121 |
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checkpoint36 |
122 |
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o implement Crank-Nickelson barotropic time-stepping |
123 |
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o recover Time-Average diagnostics |
124 |
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o fix Pb in checkpoint (PR#19) |
125 |
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o AIM become a standard package ; clean unused CPP_kees |
126 |
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127 |
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checkpoint35 |
128 |
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o subtantial rewrite of dynamics.f |
129 |
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o allows staggered time-stepping |
130 |
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o packaged obcs, aim (Atmospheric Physics), zonal_filt, shap_filt |
131 |
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o added bottom drag (linear + quadratic) |
132 |
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133 |
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checkpoint34 |
134 |
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o Modified exchange routines for correct reverse simulation. |
135 |
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o Added verification output to comply with bug fix in impldiff.F |
136 |
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as of c33 (exp2, natl_box). |
137 |
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o Corrected store directives in dynamics.F |
138 |
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o Corrected array boundaries in impldiff.F |
139 |
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o Corrected array dimensions in gmredi. |
140 |
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Added temporary scalars to avoid storage by TAMC (gmredi, kpp). |
141 |
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o Added routine GLOBAL_SUM_INT to global_sum.F |
142 |
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o Added mdsio_gl.F for ECCO purposes. |
143 |
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144 |
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checkpoint33 |
145 |
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o Fixed bug in lower BC in impldiff.F |
146 |
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o Fixed confusion about units of forcing arrays in FFIELDS.h |
147 |
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namely Fu,Fv,Qnet,Qsw,EmPmR: |
148 |
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- Removed verification/natl_box/code/external_fields_scale.F |
149 |
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(did not differ from that in model/src) |
150 |
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- Changed units of fu,fv,Qnet,Qsw,EmPmR back to proper units |
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(see FFIELDS.h for description) |
152 |
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- Scale fu,fv,Qnet,Qsw,EmPmR when used in external_forcing_surf.F, |
153 |
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kpp_calc.F and kpp_transport_t.F |
154 |
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- Removed model/src/external_fields_scale.F and calls to it |
155 |
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- verification/natl_box uses flux data with "atmospheric" sign so |
156 |
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a special version of external_fields_load.F is used to |
157 |
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change the data as it's read in. This way, the arrays |
158 |
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have the right units and signs at all times tha a user could |
159 |
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possibly use them. |
160 |
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o Corrected genmake to delete a temporary file during configuration |
161 |
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162 |
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checkpoint32 |
163 |
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o Scaling of forcing fields moved from external_forcing.F to |
164 |
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external_fields_scale.F, called directly after loading fields. |
165 |
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o Surface relaxation terms added to surface tendency fields in |
166 |
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extra subroutine. |
167 |
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o impldiff.F changed to avoid storing by TAMC of huge intermediate |
168 |
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fields. |
169 |
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o Changes in GMRedi to comply with packaging structure. |
170 |
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o Modifications and bug fixes in KPP package. |
171 |
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o Verification experiment for KPP added (verification/nat_box/) |
172 |
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173 |
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checkpoint31 |
174 |
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o Packages interface brought in line with defined standard |
175 |
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-> new routines packages_...F |
176 |
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-> changes in initialise_fixed.F, initialise_varia.F |
177 |
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-> enables initialisation interface for ECCO package |
178 |
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o Rescaling of external forcing fields immediately after read |
179 |
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(removed from external_forcing.F) |
180 |
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-> new: surface_fields_scale.F |
181 |
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-> affects ini_foorcing.F, external_fields_load.F |
182 |
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o Computation of surface tendencies before tendency updates. |
183 |
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-> new: external_forcing_surf.F |
184 |
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o Change of variable names useGMRedi, useKPP, useECCO |
185 |
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o Further changes in dynamics.F, impldiff.F for TAMC |
186 |
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o Tested for experiments 0, 2, 4. |
187 |
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- not yet tested for GMRedi. |
188 |
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- not yet tested for KPP. |
189 |
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190 |
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checkpoint30 |
191 |
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o Updates for OBCs |
192 |
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o New experiment for test OBCs (internal_wave) |
193 |
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o New output.txt in verification/exp4/results/ |
194 |
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o Updates for KPP: calculation of viscosity corrected, new variables |
195 |
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kpp_dumpFreq and kpp_taveFreq |
196 |
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o CPP'd calls to system routines for TARGET_CRAY_VECTOR (P.H.) |
197 |
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and entry for T90 in genmake |
198 |
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199 |
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checkpoint29 |
200 |
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o packaged KPP and GM/Redi |
201 |
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202 |
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checkpoint28 |
203 |
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o Corrected initialization of hFacMin for difference vertical coordinates |
204 |
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o Modified calculation of partial cell thickness to more robust algorithm |
205 |
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o config_summary.F: replaced write_1D_... by write_0D_... |
206 |
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read_write.F: added subroutines write_0D_... |
207 |
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o routines calc_common_factors, calc_gs, calc_gt, calc_phi_hyd, find_rho: |
208 |
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included some initialisations required for TAMC. |
209 |
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o routine calc_isoslopes: modified sqrt computation to make it |
210 |
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differentiable for zero argument. |
211 |
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o routines dynamics, impldiff: |
212 |
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included store directives and tape key computations required for TAMC. |
213 |
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o ALL TAMC related changes are between ifdef ALLOW_AUTODIFF_TAMC |
214 |
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215 |
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checkpoint27 |
216 |
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o fixed calc_isoslopes() to so that cancellation of terms in tensor |
217 |
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formulation works properly with variable resolution. |
218 |
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o restructured the calling tree between the_model_main() and dynamics() |
219 |
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o split initialise() into initialise_fixed() and initialise_varia() |
220 |
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o introduced initialization file pSurfInitFile for free surface (cg2d_x) |
221 |
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in new routine ini_psurf() |
222 |
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223 |
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checkpoint26 |
224 |
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o moved some #ifdef in optional routines to encompass everything |
225 |
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except the argument declarations. This was using up some memory. |
226 |
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o fixed macros like _ADT to work with both versions of Linux cpp |
227 |
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o cleaned up some unused and uninitialized variables |
228 |
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(helps when debugging with strict compile options) |
229 |
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o split up CPP_EEOPTIONS.h into options and macros |
230 |
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(macros are now in eesupp/inc/CPP_EEMACROS.h) |
231 |
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o patch for 2 processor JAM mode |
232 |
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233 |
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checkpoint25 |
234 |
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o updates for OBCs and NH |
235 |
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o dramatically reduced memory usage |
236 |
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o added "JAM" routines for use on Artic network |
237 |
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o parameterization of convection by implicit vertical diffusion |
238 |
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o added a diagnostic of convective index |
239 |
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o moved call to calc_divg_hat() from dynamics() to solve_for_pressure() |
240 |
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(this is was partly for OBCs and NH but also in anticipation of |
241 |
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an explicit free-surface option) |
242 |
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o initial state input files for U and V |
243 |
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244 |
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checkpoint24 |
245 |
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o Removed some spurious "REAL"s |
246 |
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o Updated KPP to latest version from JPL |
247 |
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o Added a COS(latitude) in horizontal viscosity |
248 |
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249 |
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checkpoint23 |
250 |
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o Added del^4 diffusion for salt and temperature |
251 |
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o Multiple minor fixes (implicit none's, arguments to global_sum, etc.) |
252 |
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253 |
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checkpoint22 |
254 |
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o Made many small changes: implicit none, format(i5), etc... |
255 |
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o Introduced KPP mixing scheme (compiles and runs but *not* tested) |
256 |
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257 |
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checkpoint21 |
258 |
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o Introduced new I/O package that supports direct-access records (mdsio.F) |
259 |
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o Split-up mid-level I/O routines |
260 |
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o Updated input data for experiments 0,1,2,4 and 5 |
261 |
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o Finally removed the genmake.* scripts (everyone seems happy with genmake) |
262 |
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263 |
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checkpoint20 |
264 |
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o Tidied up open-boundaries some more |
265 |
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o Added non-hydrostatic code |
266 |
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o Fixed some input data |
267 |
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o Modified MPI start-up to work in "coupled" context. |
268 |
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269 |
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checkpoint19 |
270 |
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o Tidied up directory structure for verification experiments. |
271 |
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o Added new code for open boundaries. |
272 |
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o Corrected advective terms near boundaries. |
273 |
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o Added CPP flag for "old UV" geometry and corrected spherical geometry. |
274 |
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o Implemented free-slip/no-slip BCs and del^4 dissipation. |
275 |
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o Split default parameters out of ini_parms.F into set_defaults.F. |
276 |
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277 |
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checkpoint18 |
278 |
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o Further changes for optional code generation with |
279 |
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CPP - ugh! |
280 |
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|
281 |
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checkpoint17 |
282 |
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o Beginning to incorporating modularity |
283 |
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for supporting atmos. and ocean configs. |
284 |
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o Small changes for TAMC complinace |
285 |
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o New ultra simple test case. Barotropic box |
286 |
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configuration "exp0". |
287 |
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|
288 |
checkpoint16 |
checkpoint16 |
289 |
o Minor changes to exchange routines to support |
o Minor changes to exchange routines to support |
290 |
accumulation in reverse mode. Adjoint of an |
accumulation in reverse mode. Adjoint of an |