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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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checkpoint40pre7 |
| 7 |
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o bug fix in dynamics.F |
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calc_viscosity called before k=1,Nr loop. |
| 9 |
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o added some #ifdef's ALLOW_PASSIVE_TRACER |
| 10 |
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o cleaned initialisations in ctrl_map_ini |
| 11 |
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related to TAF |
| 12 |
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checkpoint40pre6 |
| 14 |
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o split dynamics into thermodynamics & dynamics |
| 15 |
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o corresponding split of calc_diffusivity into |
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calc_diffusivity, calc_viscosity |
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(kpp_calc_diff, kpp_calc_visc). |
| 18 |
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o Added diffkr, kapgm to control variables |
| 19 |
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o bug fix in gmredi_slope_limit for ldd97 |
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checkpoint40pre5 |
| 22 |
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o proper initialization of Adams-Bashforth time stepping |
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+ uses forward step for very first step of model (iter=0) |
| 24 |
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o re-generated *all* output since almost all output is modified by this |
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change (sorry but we've been putting this one off for about 2 years) |
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+ natl_box, aim.5l_Equatorial_Channel and aim.5l_zon-ave were |
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*not* regenerated since they are already out of date and I don't |
| 28 |
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want to create the impression that they are suddenly working. |
| 29 |
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o removed KAP stuff for DEC's |
| 30 |
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o modified/added many .cvsignore files in */code and */input |
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o added new expt "solid-body.cs-32x32x1" |
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+ this uses an alternative form of ini_curvilinear_grid.F which |
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is not necessarily any better than the current one... |
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checkpoint40pre4 |
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o added re-initialisations of utrans,vtrans,rtrans in |
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calc_common_factors which are crucial for TAF. |
| 38 |
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o extended iMin,jMin range for calc_common_factors, |
| 39 |
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calc_diffusivity |
| 40 |
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o added option ALLOW_PASSIVE_TRACER |
| 41 |
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o a few minor updates and fixes |
| 42 |
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checkpoint40pre3 |
| 44 |
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o created calc_gtr1.F for gad package |
| 45 |
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o split the_main_loop and re-introduced forward_step |
| 46 |
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o some recomputations of nIter0 for TAMC |
| 47 |
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checkpoint40pre2 |
| 49 |
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o Updated to latest branch of AJA, JMC |
| 50 |
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o Added gradient check package |
| 51 |
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o Added routines for passive tracer handling |
| 52 |
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o Added carbon sequestration sensitivity experiment |
| 53 |
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| 54 |
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checkpoint39 |
| 55 |
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o Modifications and fixes to support TAMC |
| 56 |
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(mainly missing or wrong directives) |
| 57 |
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o Corrected common blocks when fooling TAMC to produce adjoint I/O |
| 58 |
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in addummy_in_stepping |
| 59 |
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o Updated verification/vero/ (bug fixes in code/, correct pickups in input/) |
| 60 |
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o Enabled "sliced" (xz-,yz-) exchanges, needed for obcs. |
| 61 |
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o Included following packages: |
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cal: calendar |
| 63 |
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exf: external forcing |
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ecco: essential routines to control use of cal, exf |
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(NB: this is not the full ECCO environment) |
| 66 |
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o disabled some packages by default in genmake |
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checkpoint38 |
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o see notes_c37_adj.txt |
| 70 |
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o corrected wrong layer index in external_forcing_t |
| 71 |
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o replaced the_main_loop/forward_step by the_main_loop |
| 72 |
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o removed forceoutput from write_state |
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(replaced criteria for initial/final state) |
| 74 |
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o added runtime flag for pre-C35 pickups: usePickupBeforeC35 |
| 75 |
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checkpoint37 |
| 77 |
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o mdsio.F routine split and packaged in pkg/mdsio |
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(mdsio.F and mdsio_gl.F still exist in eesupp/src but are not |
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used unless genmake -disable=mdsio) |
| 80 |
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o allow a more precise surface-geopotential gradient for the atmosphere |
| 81 |
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taking into account the change in space of Alpha (=1/rho) at the surface. |
| 82 |
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o variable "etaN" (replace cg2d_x) is the surface R-anomaly [r unit] |
| 83 |
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(ocean: sea surface height [m] / atmos: surface pressure anomaly [Pa]) |
| 84 |
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o Change units: Phi_Hydrostatic (=phiHyd), Phi_Surface(=cg2d_x) and |
| 85 |
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Phi_NonHydrostatic (=cg3d_x), all have now the dimension of a potential |
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[m2/s2] (pressure/rhoConst in the ocean ; Geo-Potential in the atmosphere). |
| 87 |
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o Time-Average diagnostics defined as a pseudo package "timeave". |
| 88 |
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o pickup files : old pickup (before c35) did not work with new code (c35 |
| 89 |
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and after) unless activating 2 commented lines in initialise-varia. |
| 90 |
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o Non-Hydrostatic pickup file Pb fixed. |
| 91 |
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o bug with Rigid-lid version (since c35) fixed. |
| 92 |
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| 93 |
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checkpoint36 |
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o implement Crank-Nickelson barotropic time-stepping |
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o recover Time-Average diagnostics |
| 96 |
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o fix Pb in checkpoint (PR#19) |
| 97 |
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o AIM become a standard package ; clean unused CPP_kees |
| 98 |
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checkpoint35 |
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o subtantial rewrite of dynamics.f |
| 101 |
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o allows staggered time-stepping |
| 102 |
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o packaged obcs, aim (Atmospheric Physics), zonal_filt, shap_filt |
| 103 |
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o added bottom drag (linear + quadratic) |
| 104 |
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checkpoint34 |
| 106 |
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o Modified exchange routines for correct reverse simulation. |
| 107 |
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o Added verification output to comply with bug fix in impldiff.F |
| 108 |
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as of c33 (exp2, natl_box). |
| 109 |
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o Corrected store directives in dynamics.F |
| 110 |
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o Corrected array boundaries in impldiff.F |
| 111 |
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o Corrected array dimensions in gmredi. |
| 112 |
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Added temporary scalars to avoid storage by TAMC (gmredi, kpp). |
| 113 |
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o Added routine GLOBAL_SUM_INT to global_sum.F |
| 114 |
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o Added mdsio_gl.F for ECCO purposes. |
| 115 |
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checkpoint33 |
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o Fixed bug in lower BC in impldiff.F |
| 118 |
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o Fixed confusion about units of forcing arrays in FFIELDS.h |
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namely Fu,Fv,Qnet,Qsw,EmPmR: |
| 120 |
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- Removed verification/natl_box/code/external_fields_scale.F |
| 121 |
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(did not differ from that in model/src) |
| 122 |
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- Changed units of fu,fv,Qnet,Qsw,EmPmR back to proper units |
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(see FFIELDS.h for description) |
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- Scale fu,fv,Qnet,Qsw,EmPmR when used in external_forcing_surf.F, |
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kpp_calc.F and kpp_transport_t.F |
| 126 |
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- Removed model/src/external_fields_scale.F and calls to it |
| 127 |
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- verification/natl_box uses flux data with "atmospheric" sign so |
| 128 |
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a special version of external_fields_load.F is used to |
| 129 |
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change the data as it's read in. This way, the arrays |
| 130 |
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have the right units and signs at all times tha a user could |
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possibly use them. |
| 132 |
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o Corrected genmake to delete a temporary file during configuration |
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checkpoint32 |
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o Scaling of forcing fields moved from external_forcing.F to |
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external_fields_scale.F, called directly after loading fields. |
| 137 |
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o Surface relaxation terms added to surface tendency fields in |
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extra subroutine. |
| 139 |
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o impldiff.F changed to avoid storing by TAMC of huge intermediate |
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fields. |
| 141 |
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o Changes in GMRedi to comply with packaging structure. |
| 142 |
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o Modifications and bug fixes in KPP package. |
| 143 |
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o Verification experiment for KPP added (verification/nat_box/) |
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checkpoint31 |
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o Packages interface brought in line with defined standard |
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-> new routines packages_...F |
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-> changes in initialise_fixed.F, initialise_varia.F |
| 149 |
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-> enables initialisation interface for ECCO package |
| 150 |
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o Rescaling of external forcing fields immediately after read |
| 151 |
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(removed from external_forcing.F) |
| 152 |
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-> new: surface_fields_scale.F |
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-> affects ini_foorcing.F, external_fields_load.F |
| 154 |
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o Computation of surface tendencies before tendency updates. |
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-> new: external_forcing_surf.F |
| 156 |
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o Change of variable names useGMRedi, useKPP, useECCO |
| 157 |
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o Further changes in dynamics.F, impldiff.F for TAMC |
| 158 |
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o Tested for experiments 0, 2, 4. |
| 159 |
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- not yet tested for GMRedi. |
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- not yet tested for KPP. |
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checkpoint30 |
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o Updates for OBCs |
| 164 |
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o New experiment for test OBCs (internal_wave) |
| 165 |
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o New output.txt in verification/exp4/results/ |
| 166 |
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o Updates for KPP: calculation of viscosity corrected, new variables |
| 167 |
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kpp_dumpFreq and kpp_taveFreq |
| 168 |
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o CPP'd calls to system routines for TARGET_CRAY_VECTOR (P.H.) |
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and entry for T90 in genmake |
| 170 |
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checkpoint29 |
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o packaged KPP and GM/Redi |
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checkpoint28 |
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o Corrected initialization of hFacMin for difference vertical coordinates |
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o Modified calculation of partial cell thickness to more robust algorithm |
| 177 |
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o config_summary.F: replaced write_1D_... by write_0D_... |
| 178 |
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read_write.F: added subroutines write_0D_... |
| 179 |
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o routines calc_common_factors, calc_gs, calc_gt, calc_phi_hyd, find_rho: |
| 180 |
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included some initialisations required for TAMC. |
| 181 |
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o routine calc_isoslopes: modified sqrt computation to make it |
| 182 |
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differentiable for zero argument. |
| 183 |
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o routines dynamics, impldiff: |
| 184 |
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included store directives and tape key computations required for TAMC. |
| 185 |
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o ALL TAMC related changes are between ifdef ALLOW_AUTODIFF_TAMC |
| 186 |
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| 187 |
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checkpoint27 |
| 188 |
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o fixed calc_isoslopes() to so that cancellation of terms in tensor |
| 189 |
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formulation works properly with variable resolution. |
| 190 |
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o restructured the calling tree between the_model_main() and dynamics() |
| 191 |
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o split initialise() into initialise_fixed() and initialise_varia() |
| 192 |
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o introduced initialization file pSurfInitFile for free surface (cg2d_x) |
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in new routine ini_psurf() |
| 194 |
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checkpoint26 |
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o moved some #ifdef in optional routines to encompass everything |
| 197 |
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except the argument declarations. This was using up some memory. |
| 198 |
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o fixed macros like _ADT to work with both versions of Linux cpp |
| 199 |
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o cleaned up some unused and uninitialized variables |
| 200 |
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(helps when debugging with strict compile options) |
| 201 |
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o split up CPP_EEOPTIONS.h into options and macros |
| 202 |
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(macros are now in eesupp/inc/CPP_EEMACROS.h) |
| 203 |
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o patch for 2 processor JAM mode |
| 204 |
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| 205 |
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checkpoint25 |
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o updates for OBCs and NH |
| 207 |
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o dramatically reduced memory usage |
| 208 |
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o added "JAM" routines for use on Artic network |
| 209 |
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o parameterization of convection by implicit vertical diffusion |
| 210 |
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o added a diagnostic of convective index |
| 211 |
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o moved call to calc_divg_hat() from dynamics() to solve_for_pressure() |
| 212 |
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(this is was partly for OBCs and NH but also in anticipation of |
| 213 |
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an explicit free-surface option) |
| 214 |
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o initial state input files for U and V |
| 215 |
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| 216 |
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checkpoint24 |
| 217 |
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o Removed some spurious "REAL"s |
| 218 |
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o Updated KPP to latest version from JPL |
| 219 |
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o Added a COS(latitude) in horizontal viscosity |
| 220 |
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| 221 |
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checkpoint23 |
| 222 |
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o Added del^4 diffusion for salt and temperature |
| 223 |
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o Multiple minor fixes (implicit none's, arguments to global_sum, etc.) |
| 224 |
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| 225 |
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checkpoint22 |
| 226 |
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o Made many small changes: implicit none, format(i5), etc... |
| 227 |
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o Introduced KPP mixing scheme (compiles and runs but *not* tested) |
| 228 |
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| 229 |
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checkpoint21 |
| 230 |
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o Introduced new I/O package that supports direct-access records (mdsio.F) |
| 231 |
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o Split-up mid-level I/O routines |
| 232 |
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o Updated input data for experiments 0,1,2,4 and 5 |
| 233 |
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o Finally removed the genmake.* scripts (everyone seems happy with genmake) |
| 234 |
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| 235 |
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checkpoint20 |
| 236 |
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o Tidied up open-boundaries some more |
| 237 |
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o Added non-hydrostatic code |
| 238 |
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o Fixed some input data |
| 239 |
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o Modified MPI start-up to work in "coupled" context. |
| 240 |
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| 241 |
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checkpoint19 |
| 242 |
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o Tidied up directory structure for verification experiments. |
| 243 |
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o Added new code for open boundaries. |
| 244 |
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o Corrected advective terms near boundaries. |
| 245 |
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o Added CPP flag for "old UV" geometry and corrected spherical geometry. |
| 246 |
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o Implemented free-slip/no-slip BCs and del^4 dissipation. |
| 247 |
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o Split default parameters out of ini_parms.F into set_defaults.F. |
| 248 |
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| 249 |
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checkpoint18 |
| 250 |
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o Further changes for optional code generation with |
| 251 |
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CPP - ugh! |
| 252 |
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| 253 |
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checkpoint17 |
| 254 |
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o Beginning to incorporating modularity |
| 255 |
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for supporting atmos. and ocean configs. |
| 256 |
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o Small changes for TAMC complinace |
| 257 |
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o New ultra simple test case. Barotropic box |
| 258 |
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configuration "exp0". |
| 259 |
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| 260 |
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checkpoint16 |
| 261 |
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o Minor changes to exchange routines to support |
| 262 |
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accumulation in reverse mode. Adjoint of an |
| 263 |
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assignment is an addition. |
| 264 |
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o Changes to support compilation by TAMC (LR(1) |
| 265 |
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syntax) and by g77 under Linux ( 72 character |
| 266 |
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limit ). |
| 267 |
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| 268 |
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checkpoint15 |
| 269 |
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Rewrote exchange routines to allow |
| 270 |
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o General tile <-> tile connectivity. |
| 271 |
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o TAMC reverse mode flag ( is this really needed? ) |
| 272 |
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o Variable width overlap and exchange region widths. |
| 273 |
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o Hooks for sharing data via DMA, Arctic, Memory Channel, |
| 274 |
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shmput/shmget, VIA, SYSV shmem and every other cool |
| 275 |
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communication method. |
| 276 |
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| 277 |
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checkpoint14 |
| 278 |
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Consistent isomorphism chages made. These allow dynamical core |
| 279 |
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to support both pressure and meters as a vertical coordinate. |
| 280 |
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| 281 |
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checkpoint13 |
| 282 |
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Release which corrects global_max problem and a couple |
| 283 |
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of KGM time-averaging diagnostic errors. Also contains |
| 284 |
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a double-gyre experiment setup as well as the baseline |
| 285 |
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4 degree global template. The double gyre template is |
| 286 |
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organised to allow it to be applied automatically to |
| 287 |
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the baseline configuration. |
| 288 |
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|
| 289 |
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branch-point-rdot |
| 290 |
|
A few tidy-ups have been made bt the real point of this |
| 291 |
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check-point (excuse the pun) is to allow a branch to be |
| 292 |
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made for the purposes of adding the rDot alterations. |
| 293 |
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I don't want to commit the rDot to the main-trunk until |
| 294 |
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we've actually tested it... |
| 295 |
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| 296 |
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checkpoint12 |
| 297 |
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Tidy up and added generic genmake script (formerly |
| 298 |
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configure script). |
| 299 |
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Released to testers. |
| 300 |
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|
| 301 |
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checkpoint11 |
| 302 |
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Re-arranged initialise() and introduced ini_vertical_grid() |
| 303 |
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and ini_masks_etc(). |
| 304 |
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| 305 |
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checkpoint10 |
| 306 |
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Introduced the configure script. |
| 307 |
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Separated out the diags package. |
| 308 |
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Added template for writing time-averages of tile/intermediate quantities. |
| 309 |
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Updated SIZE.h in exp2 and made the data big-endian. |
| 310 |
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|
| 311 |
checkpoint9 |
checkpoint9 |
| 312 |
MPI fix. Filename changes (meta/data). salbin*y stuff. |
MPI fix. Filename changes (meta/data). salbin*y stuff. |
| 313 |
General tidy-up. |
General tidy-up. |
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