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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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checkpoint66l (2017/10/24) |
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o pkg/kpp, ggl90 & ebm: |
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- read namelist without IOSTAT=errIO to force to stop if there is an error |
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in the parameter file namelist. |
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o pkg/cheapaml: major changes to relaxation coefficient setting: |
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- rename parameters cheapaml_taurelax & cheapaml_taurelaxocean (in days) |
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to cheap_tauRelax & cheap_tauRelaxOce (now in seconds); |
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- if using cheapMaskFile, set relaxation coeff to: cheapMask/tauRelax |
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(instead of 1/cheapMask over ocean and 1/tauRelax over land); |
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- with cheapMaskFile unset: set relaxation coeff according to land/ocean mask |
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(unchanged) but skip increase near domain edges for periodic domain (in X |
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or Y dir) when cheapamlX/Yperiodic=T ; also fix linear increase (over |
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Cheapaml_mask_width grid points) of coeff towards domain edges (previously |
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was increasing away from edges). Update output of experiment "cheapAML_box". |
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o pkg/cheapaml: |
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- move setting of (fixed in time) relaxation coefficient |
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from cheapaml_init_varia.F to cheapaml_init_fixed.F |
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o pkg/exf: |
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- add specific forcing field for tides to feed model new geopotential anomaly |
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forcing, for now within #ifdef EXF_ALLOW_TIDES. |
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- remove from common block unused params: exf_inscal_sst & exf_inscal_sss. |
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o model: |
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- add new 2-d forcing field for time-dependent geopotential anomaly (e.g., |
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tidal forcing), in m^2/s^2 ; add run-time param to allow to turn it off. |
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o eesupp/src: |
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- shift standardMessageUnit in eeboot.F and I/O units in mdsfindunit.F |
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for coupling to GEOS AGCM: HACK_FOR_GMAO_CPL option in CPP_EEOPTIONS.h |
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checkpoint66k (2017/09/20) |
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o model/src: |
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- add missing CPP brackets (ALLOW_COST, ALLOW_CTRL in load_fields_driver.F |
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and the_model_main.F) |
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o ctrl: |
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- use zeroRL in place of fc when ALLOW_COST is not compiled (in ctrl_pack.F) |
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- call MDS_READ_FIELD / MDS_WRITE_FIELD instead of deprecated |
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mdsreadfield / mdswritefield (in ctrl_get_gen.F, ctrl_map_ini_gen.F, |
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ctrl_map_ini_genarr.F, and ctrl_map_ini_gentim2d.F ) |
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o eesupp: |
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- add CPP option to activate some pieces of code for coupling to GEOS AGCM; |
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- shift commonly used IO unit (in eeboot.F) for coupling to GEOS AGCM. |
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o pkg/bling: |
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- bling_production: Fix typo in calcium carbonate uptake. Also rearranging |
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and cleaning |
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o model/src: |
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- move k loop inside correction_step.F (+ update calling S/R) |
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- collect implicit pressure gradient tendencies in local 2-D array; |
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affect results (at machine truncation level) when using 3-D solver; update |
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output of exp.: exp4 (x1), global_ocean.cs32x15 (x2),hs94.cs-32x32x5.impIGW, |
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rotating_tank, short_surf_wave,tutorial_deep_convection (x2) |
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& tutorial_plume_on_slope. |
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checkpoint66j (2017/08/15) |
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o pkg/ptracers: |
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- fix surface forcing under ice-shelf (useShelfIce=T). |
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o pkg/atm_phys: |
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- use hFac weighted average when applying A-grid atm-phys momentum tendency |
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to C-grid dynamics; this ensures wind-stress match mom tendency. |
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o eesupp/src: |
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- change default for opening scratch files to avoid STATUS='SCRATCH' |
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- close scratch files with STATUS='DELETE' |
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- changes affect eeset_parms.F and open_copy_data_file.F and many routines |
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that read namelists (because they close the scratch files) |
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- you can revert to old default by setting USE_FORTRAN_SCRATCH_FILES |
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in CPP_EEOPTIONS.h (tested in ideal_2D_oce/code & lab_sea/code_ad) |
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o pkg/atm_phys: |
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- fix unset arguments in (unused) S/R surface_flux_0d. |
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o eesupp/src: |
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- add argument "procId" to S/R EESET_PARMS to fix scratchFile1 & 2 setting |
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(case TARGET_BGL or TARGET_CRAYXT) for early call (from eeboot_minimal.F): |
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called with myProcId in eeboot.F and with mpiMyWId in eeboot_minimal.F |
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o pkg/streamice: |
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- remove blank between _EXCH_XY_RL and "()", which my Apple Xcode |
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preprocessor /usr/bin/cpp cannot interpret; 3 instances in total in |
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streamice_driving_stress_fd.F and streamice_advect_2dtracer.F |
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o pkg/diagnostics: |
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- new option to allow to cumulate thickness-factor (hFac) weighted field |
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(if field permitted); implemented by changing sign of "jdiag" pointer |
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(> 0: cumlulate field, < 0: cumulate hFac weighted field). |
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a) restricted to 3-d (Nr levels), level centered diagnostics at U,V or Cell |
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center position (gcode(2)='U','V','M' & gcode(3,5,9:10)='R',' ','MR') |
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b) for now, activated by setting fileFlags 3rd character to 'h'. |
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checkpoint66i (2017/07/18) |
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o pkg/cheapaml: |
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- add parameter "useRelativeWind", default set to False; this change the |
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previous setting which was always using relative wind. |
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o add hooks for the Parallel Data Assimilation Framework PDAF |
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(http://pdaf.awi.de/) in eeboot_minimal.F and the_main_loop.F; |
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to use set CPP-flag USE_PDAF in CPP_EEOPTIONS.h |
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o pkg/exf: |
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- interpolation of vector fields (exf_interp_uv.F): fix bug in calculation |
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of South-Pole mean value. |
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- interpolation near the poles, case where second additional row is at the |
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pole (or beyond the pole and moved to the pole): change first addition row |
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value to a linear interpolation between pole and 1rst (S.pole)/last (N.pole) |
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row (instead of just a copy of it). |
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o pkg/seaice: |
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- prevent JFNK and KRYLOV solvers from trying to reduce a residual of 0 |
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- add the option to compute no-slip du/dy, dv/dx (i.e. |
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the offdiagonal strain rate e12) by a second order approximation |
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on the boundary; works only with JFNK, KRYLOV, or EVP solvers, because |
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it is too messy to implement for the implicit LSR matrix. |
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SEAICE_2ndOrderBC = .FALSE. by default |
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checkpoint66h (2017/06/02) |
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o pkg/seaice: |
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- add new routines to compute stress tensor components and stress tensor |
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divergence to be reused in s/r seaice_lsr and s/r seaice_calc_lhs |
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- change names of diagnostics SIsigI/II (commonly used for invariants) |
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to SIsig1/sig2 (more common for principal components) to avoid confusion |
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o pkf/exf: |
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- add a stop if useRelativeWind with un-updated uwind/vwind (e.g., constant); |
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similarly, stop if rotateStressOnAgrid with constant wind-stress. |
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o pkg/seaice: |
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- remove (comment out) diagnostics SIuwind,SIvwind,SIfu,SIfv (duplicate of |
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EXFuwind,EXFvwind,oceTAUX,oceTAUY) and point them to their equivalent. |
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- add diagnostics of wind-stress over seaice (SItaux,SItauy) and seaice |
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fraction weighted wind stress over ocean+seaice (SIatmTx,SIatmTy). |
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o pkg/diagnostics: |
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- small piece of code to rename (old) diagnostics, when namelist is processed. |
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o model/src: |
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- new run-time param (useMin4hFacEdges) to select method for setting hFacW,S: |
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originally, set as minimum of adjacent hFacC factor ; now (new default) |
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computed from rSurfW,S and rLowW,S by applying same rules as for hFacC. |
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Only matters when useShelfIce=T with particular ice-shelf cavity geometry. |
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o pkg/seaice: |
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- add momemtum advection, off by default, still in test phase |
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most of the momentum advection code is adapted and reused from mom_vecinv |
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o pkg/mom_vecinv: |
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- pass these runtime flags: |
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selectVortScheme, highOrderVorticity, upwindVorticity, useJamartMomAdv |
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as formal parameters to s/r mom_vi_u/v_coriolis, mom_vi_u/v_coriolis_c4, |
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so that these routines can also be used in pkg/seaice. |
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checkpoint66g (2017/04/24) |
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o model/src: |
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- more robust ordering of column thickness integral (=Sum_k(drF*hFac) ) |
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to get same expression (regarding machine truncation) in different places |
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in ini_masks_etc.F (e.g., rSurfC,W,S is now exactly zero when it should). |
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Update forward output of experiments: global_ocean.cs32x15 (all 5 except |
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viscA4), isomip (x3), tutorial_global_oce_in_p & tutorial_plume_on_slope. |
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o pkg/shelfice: |
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- ALLOW_SHIFWFLX_CONTROL: move setting of maskSHI from shelfice_update_masks.F |
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to shelfice_init_fixed.F |
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- change S/R SHELFICE_UPDATE_MASKS to SHELFICE_INIT_DEPTHS (still called from |
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ini_masks_etc.F for now) to update ocean upper boundary position according |
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to ice-shelf topography (instead of directly updating hFacC). |
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o model/src: |
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- move call to CTRL_INIT & CTRL_ADMTLM from the middle to the bottom of |
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packages_init_fixed.F to allow other pkgs to set mask and weight fields. |
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|
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checkpoint66f (2017/04/06) |
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o model/src: |
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- add specific run-time param to select level of printed plot-field-maps, |
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set by default to debugLevel. Remove internal param "printDomain". |
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o pkg/seaice: |
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- add flag to add snow mass to seaiceMassC/U/V, the default is |
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SEAICEaddSnowMass=.FALSE., not to change previous results |
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o pkg/bling |
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- Bug fix in bling_production regarding unit conversion for diagnostics |
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being put in the wrong place |
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o model/src: |
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- add back recomputation of rSurfW & S to ensure consistent column thickness |
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(needed for rStar) between Sum_k(hFac*drF) and rSurf-rLow, for now only |
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when using pkg/shelfice; was initially added on 2012/06/01 (ini_masks_etc.F |
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revision 1.51) but was removed accidentally on 2014/02/08 (v1.53). |
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o pkg/autodiff: |
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- clean-up "checkpoint.flow" |
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o pkg/rw (Contribution from Jody Klymak): |
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option to set mds file suffix as function of time in simulation: |
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*) new input parameter "rwSuffixType" (read from PARM03 namelist) |
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to select file suffix format; by default (=0), use iteration number; |
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*) add simple routine to return file suffix according to rwSuffixType; |
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*) in model/src and in most pkgs (except: atm2d, fizhi, regrid & streamice), |
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use new S/R to get file suffix, except for debug output file (diagFreq) |
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and pkgs offline & rbcs input files. |
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o pkg/rw: |
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- uniform processing of "I10" suffix across writing fld routines; used to |
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simplify debug writing of cg2/3d_b/x in solve_for_pressure.F & post_cg3d.F |
| 186 |
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(similar to cg3d.F, cg3d_ex0.F) |
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o pkg/mom_vecinv: |
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- highOrderVorticity in selectVortScheme=2 case: fix c4 coeff in splitted |
| 189 |
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vorticity flux (keep same sum in case vBarXm=vBaXp, uBarYm=uBarYp). |
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o pkg/bling: |
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- Many small changes intended to clean the code. |
| 192 |
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Unnecessary ADJOINT_SAFEs removed ; |
| 193 |
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removed BLING_COST.h BLING_CTRL.h bling_cost.F ; |
| 194 |
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diagnostics added. |
| 195 |
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|
| 196 |
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checkpoint66e (2017/03/14) |
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o pkg/exf: |
| 198 |
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- interpolation with #undef EXF_INTERP_USE_DYNALLOC: move buffer size |
| 199 |
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definition outside EXF_PARAM.h in new header file: EXF_INTERP_SIZE.h; |
| 200 |
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use fixed size buffer (passed to S/R EXF_INTERP & EXF_INTERP_UV) to |
| 201 |
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avoid any dynamic allocation ; |
| 202 |
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- S/R EXF_CHECK: add new check & stop when file-name is defined but not |
| 203 |
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read-in ; add warning when file is read-in but not used within pkg/exf ; |
| 204 |
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+ check for buffer-size (if #undef EXF_INTERP_USE_DYNALLOC). |
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- update exf_summary.F (print {FLD}RepCycle). |
| 206 |
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o verification/global_with_exf: |
| 207 |
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- switch on exf interpolation in AD test (just like the forward test) |
| 208 |
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o pkg/mom_vecinv: |
| 209 |
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- add storage directives to avoid recomputations within mom_vecinv.F |
| 210 |
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which were generating seg. fault with gfortran -devel |
| 211 |
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o pkg/ctrl, pkg/smooth: |
| 212 |
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- initialize array halos which were generating seg. fault with |
| 213 |
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gfortran -devel in adjoint mode |
| 214 |
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o pkg/exf: |
| 215 |
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- for each input field, enable to specify a field specific repeat-cycle |
| 216 |
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({FLD}RepCycle) which defaults to pkg/exf main "repeatPeriod". |
| 217 |
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o verification/lab_sea: |
| 218 |
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- update AD results of primary test and noseaicedyn test after switching |
| 219 |
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to new version of TAF (5.3.13 vs 5.3.2 before); agreement with gradient |
| 220 |
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check stays about the same. |
| 221 |
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o pkg/exf: |
| 222 |
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- fix bug in exf_zenithangle.F for cases select_ZenAlbedo > 0 with useCAL=T. |
| 223 |
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- exf_check: MAX_LAT_INC need only be "loc_nlat-1", not equal to loc_nlat |
| 224 |
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o pkg/bling, USE_EXFCO2 code: |
| 225 |
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- add parameter "apco2RepCycle" (set to pkg/exf "repeatPeriod" by default); |
| 226 |
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- update calls to EXF S/R (use new version: EXF_INIT_FLD & EXF_SET_FLD). |
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o pkg/exf: |
o pkg/exf: |
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- rename S/R EXF_INIT to EXF_INIT_VARIA ; |
- rename S/R EXF_INIT to EXF_INIT_VARIA ; |
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- add arguments: fldName (for debug msg) and fldRepeatCycle (set to |
- add arguments: fldName (for debug msg) and fldRepeatCycle (set to |
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