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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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checkpoint65g (2014/11/19) |
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o pkg/diagnostcis: |
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- add preconditioner off-diagonal factor (diagCG_pcOffDFac) as run-time param |
| 10 |
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o pkg/my82,pp81,kl10: |
| 11 |
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- fix ALLOW_3D_DIFFKR implementation (previously had no effect): use 3-D |
| 12 |
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field diffKr as background diffusivity to set minimum diffusivity value. |
| 13 |
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o pkg/seaice: |
| 14 |
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- add new parameter SEAICEuseEVPrev (for revisited EVP by |
| 15 |
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Bouillon et al 2013) |
| 16 |
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- add SEAICE_evpAlpha/Beta to namelist |
| 17 |
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- modify seaice_evp code to able to use SEAICEuseEVPrev. These changes |
| 18 |
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involve trivial re-ordering of divisions/multiplications that should not |
| 19 |
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have any effects, but ... they do change the results of lab_sea.hb87 so |
| 20 |
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that only 2 digits of agreement remain, in line with the general |
| 21 |
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instability/fragility of the evp-code. For now, I do not care and just |
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update the verification experiment |
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o pkg/ctrl : add generic pre-processing (xx_genarr2d_preproc etc) |
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- remove xx_genarr2d_numsmooth etc |
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- use xx_genarr2d_preproc etc instead |
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- carry out smooth_correl2D at initialization stage rather than during |
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time stepping. |
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- get smoothOpNb from xx_gentim2d_preproc |
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o global_oce_cs32 : |
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- add test of generic ecco capabilities. |
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o pkg/exf/exf_getsurfacefluxes.F : |
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- add to tmpUE/tmpVN rather than re-initializing them (conventional behavior). |
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o pkg/ctrl,ecco : |
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- omit un-necessary arguments to ctrl_cost_gen.F unless ECCO_CTRL_DEPRECATED |
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is defined. |
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o pkg/seaice: add diagnostics for Delta (deformation parameter) |
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o model/src: |
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- when ALLOW_3D_DIFFKR is defined, add a Warning if any of the vertical |
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diffusivity (background) is specified but ignored. |
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o verification: |
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- in testreport, convert hostname to lower case for default output dir name |
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o model, pkg : add useCTRL, useECCO parameters (on/off run time switch). |
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o pkg/dic: add modifications from Hajoon: |
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- add iron sedimentation flux function of the flux of PO4 out of bottom layer |
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- light attenuation: add self-shading effect by climatological Chlorophyll |
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(read from file). |
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o pkg/seaice/seaice_preconditioner.F : fix cpp flags, so that code also |
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compiles when SEAICE_ALLOW_DYNAMICS is undefined |
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o global_oce_llc90,cs32 : ecco_v4 verification exps now use separate |
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AUTODIFF_OPTIONS.h, CTRL_OPTIONS.h, ECCO_OPTIONS.h rather than |
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ECCO_CPPOPTIONS.h (i.e. replacing the deprecated, circumvoluted, |
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approach where CPP_OPTIONS.h includes an omnipotent |
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ECCO_CPPOPTIONS.h that superseeds pkgs '_OPTIONS.h'). |
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o pkg/ctrl/ctrl_map_ini_genarr.F : include GMREDI_OPTIONS.h where |
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ALLOW_3D_KAPGM, ALLOW_3D_KAPREDI (to be added later) belong. |
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o pkg/seaice/SEAICE_SIZE.h : replace ALLOW_AUTODIFF_TAMC with ALLOW_AUTODIFF |
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to avoid needing AUTODIFF_OPTIONS.h anytime SEAICE_SIZE.h is included |
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(it seems that THSICE_SIZE.h, PTRACERS_SIZE.h have the same issue...) |
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o model/src, pkg/smooth, profiles, salt_plume, seaice, exf, ecco, ctrl : |
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add ECCO_OPTIONS.h, AUTODIFF_OPTIONS.h, CTRL_OPTIONS.h when needed |
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- ECCO_OPTIONS.h is needed when including ecco_cost.h, ecco.h |
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- AUTODIFF_OPTIONS.h is needed when including tamc.h, tamc_keys.h |
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- CTRL_OPTIONS.h is needed when including ctrl.h, optim.h, etc |
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o pkg/ctrl,ecco,exf : |
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- remove variables associated with NON-generic costs, |
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unless ECCO_CTRL_DEPRECATED is defined. |
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- remove NON-generic NON-obcs controls, |
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unless ECCO_CTRL_DEPRECATED is defined. |
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o pkg/ctrl : added ctrl_local_params.h |
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o pkg/ecco : added ecco_local_params.h |
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o verification : added ECCO_CTRL_DEPRECATED to most as and oad |
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experiments, which will progressively be removed once the |
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experiments are revised to use only generic controls/costs. |
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checkpoint65f (2014/10/13) |
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o pkg/ctrl, ecco, seaice : minor changes in headers |
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o global_oce_llc90,cs32 : ecco_v4 verification exps now test generic |
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cost function and control capabilities added since checkpoint65c. |
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o pkg/ctrl: regroup all obcs ctrl variables in CTRL_OBCS.h. |
| 80 |
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o pkg/ecco: increase modularity and improve logic |
| 81 |
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- ecco_toolbox.F (new) : basic operations that are often used, |
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including ecco_zero, ecco_cp, ecco_cprsrl, ecco_diffmsk, |
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ecco_addcost, ecco_add, ecco_div, ecco_readbar. |
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- cost_gencal.F (new) : determine filnames and records. |
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- cost_genread.F, cost_generic.F : condense code using ecco_toolbox. |
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- cost_generic.F : use spzeroloc rather than hard-coded -9999, |
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and exploit the above functions leading to more compact code. |
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- cost_genread.F : rm un-necessary arguments, re-arrange args order. |
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- ecco_check.F, ecco_readparms.F : bring logic up to date (using_tpj, |
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using_ers, using_gfo, using_mdt is now only defined within gencost) |
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o pkg/ecco: extend generic cost capabilities |
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- pkg/ecco : added 3D gencost (ALLOW_GENCOST3D), added gencost |
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capabilities via gencost_preproc (+ _c,_i,_r related params), |
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gencost_posproc (+ _c,_i,_r related params), gencost_nrecperiod, |
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gencost_outputlevel arguments to cost_generic |
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- pkg/ecco/cost_genread.F (new) : interface between cost_generic |
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and active_read, making room for gencost_preproc to take effect. |
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Added preproc code ('climmon') to replace GENERIC_BAR_MONTH. |
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- pkg/ecco/cost_generic.F : |
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compute and store misfit maks*(model-data) in localdif that is |
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then used in cost and for output, output misfit if outlev.GT.0 |
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- pkg/ecco/cost_averagesfields.F : depend on gencost_barskip |
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rather gencost_barfile for deciding whether to write barfile |
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- pkg/ecco/ecco_cost_driver.F : extract call to cost_profiles from cost_hyd |
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- pkg/ecco/ecco_cost_init_fixed.F : extract gencost weights from |
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ecco_cost_weights, re-activate ecco_summary, determine gencost_barskip |
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- pkg/ecco/ecco_summary.F : report gencost variables |
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- pkg/ecco/cost_gencost_customize.F : treat case of scatterometer costs |
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o pkg/sea/SEAICE_OPTIONS.h : add ALLOW_COST_ICE, ALLOW_SEAICE_COST_SMR_AREA |
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o pkg/ecco: internal re-organization |
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- resolve un-necessary dependancies within pkg/ecco and to pkg/ctrl |
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(rm includes of optim.h and ctrl.h, replace optimcycle with eccoiter, |
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mv relevant variables definition from ecco_cost.h to ecco.h, |
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make sure gencost routines only include ecco.h) |
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- throughout : add missing CCP switches, rm unused variables, |
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and rm un-necessary CPP switches |
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- throughout gencost routines : replace modelstartdate with |
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gencost_startdate when needed |
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- cost_bp_read.F : use arguments, instead of common blocs |
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so that it can be used also by (new) cost_gencost_bpv4.F |
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- ecco_init_varia.F : initialize RHOsumGlob_0, VOLsumGlob_0 |
| 122 |
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- ecco_phys.F : compute etanFull |
| 123 |
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- ecco_readparms.F : rename using_topex as using_tpj, add |
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bpv4-grace to gencost list, initialize added parameters |
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- ecco_summary.F : include SIZE.h needed for augmented ecco.h |
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|
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checkpoint65e (2014/09/28) |
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o pkg/obcs: |
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- replaced the just-added CPP options with run-time variables |
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(see pkg/obcs/OBCS_PARAMS.h for details) |
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o pkg/obcs: |
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- add additional CPP options for sponge boundary layers |
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(see pkg/obcs/OBCS_OPTIONS.h for details) |
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o pkg/atm_phys: |
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- implement simple (obliquity only, assuming circular planet orbit) |
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seasonal cycle for incoming insolation ; used when run-time parameter |
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"select_incSW" is set to 1 ; by default (=0), uses old unchanged formula. |
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o pkg/exf, pkg/ecco, pkg/ctrl: |
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- add ctrlUseGen and .NOT.ctrlUseGen exclusive brackets |
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- activate gentim2d for xx_atemp,xx_aqh,xx_swdown,xx_lwdown,xx_precip |
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- implement gentim2d for xx_tauu, xx_tauv |
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o pkg/ctrl, pkg/ecco : |
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- fix and complement the generic controls implementation |
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o pkg/exf/exf_getclim.F, exf_getffields.F, exf_getsurfacefluxes.F, |
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pkg/shelfice/shelfice_thermodynamics.F, |
| 146 |
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verification/hs94.1x64x5/code_ad/ctrl_map_gentim2d.F, |
| 147 |
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verification/hs94.1x64x5/code_oad/ctrl_map_gentim2d.F : |
| 148 |
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- add weight in CTRL_GET_GEN calls |
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o pkg/ctrl : |
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- ctrl_get_gen.F : add weight as input parameter, and apply |
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it directly rather than using smooth_correl2Dw (to be retired). |
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- ctrl_map_gentim2d.F : add wgentim2d in CTRL_GET_GEN call |
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o pkg/ctrl : |
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- introduce run time switch ctrlUseGen (in ctrl.h, ctrl_check.F, |
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ctrl_init_variables.F, ctrl_readparms.F, ctrl_summary.F) |
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- re-activate ctrl_summary (call in ctrl_init.F) |
| 157 |
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o pkg/ctrl/ctrl_cost_gen.F : |
| 158 |
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- fix CCP brackets, remove un-necessary myiter, mytime |
| 159 |
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o pkg/ecco, pkg/ctrl : |
| 160 |
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- remove cost_genctrl.F (now pkg/ctrl/ctrl_cost_driver.F) |
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- remove cost_forcing_gen.F (now pkg/ctrl/ctrl_cost_gen2d.F) |
| 162 |
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- add ctrl_cost_driver.F (replaces pkg/ecco/cost_genctrl.F) |
| 163 |
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- add ctrl_cost_gen2d.F (replaces pkg/ecco/cost_forcing_gen.F) |
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|
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checkpoint65d (2014/09/15) |
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o pkg/ctrl/CTRL_GENARR.h, ctrl_readparms.F : |
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- add xx_genarr2d_bounds,xx_genarr3d_bounds, |
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xx_genarr2d_numsmooth, xx_genarr3d_numsmooth |
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o pkg/ctrl/ctrl_map_ini_genarr.F : |
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- remove compilation failure |
| 171 |
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- replace hard coded example |
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- use ctrl_map_ini_gen2D, 3D |
| 173 |
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o pkg/ctrl/ctrl_pack.F, ctrl_unpack.F : |
| 174 |
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- on/off switch based upon xx_genarr2d_weight,3d |
| 175 |
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o src/packages_init_variables.F : |
| 176 |
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- regroup pkg/estimation calls |
| 177 |
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- remove CTRL_MAP_INI, CTRL_MAP_INI_ECCO |
| 178 |
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(moved to ctrl_init_variables) |
| 179 |
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o cost/cost_init_varia.F : |
| 180 |
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- remove ecco_cost_init_varia |
| 181 |
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(moved to ecco_init_varia) |
| 182 |
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o ctrl/ctrl_init_variables.F : |
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- add CTRL_MAP_INI, CTRL_MAP_INI_ECCO |
| 184 |
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- add CTRL_MAP_INI_GENARR, SEAICE_CTRL_MAP_INI |
| 185 |
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o ctrl/ctrl_map_ini.F : |
| 186 |
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- remove ctrl_map_ini_genarr, seaice_ctrl_map_ini |
| 187 |
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(moved to ctrl_init_variables) |
| 188 |
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o ctrl/ctrl_map_ini_ecco.F : |
| 189 |
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- remove ECCO_PHYS (mv to ecco_init_varia) |
| 190 |
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- remove seaice_ctrl_map_ini (mv to ctrl_init_variables) |
| 191 |
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o ecco/ecco_ad_diff.list : |
| 192 |
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- add ecco_init_varia.f |
| 193 |
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o ecco/ecco_init_varia.F |
| 194 |
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- new routine |
| 195 |
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o pkg/streamice: |
| 196 |
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- move call to STREAMICE_INITIALIZE_PETSC from the_model_main.F |
| 197 |
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to streamice_init_fixed.F ; fix setting of STREAMICEisOn. |
| 198 |
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- from model/src, only call pkg/streamice routines if useStreamIce is TRUE. |
| 199 |
o pkg/generic_advdiff: |
o pkg/generic_advdiff: |
| 200 |
- fix bug causing negatives in GAD_SMOLARKIEWICZ_HACK, introduced 8/8/2014. |
- fix bug causing negatives in GAD_SMOLARKIEWICZ_HACK, introduced 8/8/2014. |
| 201 |
o pkg/exf : |
o pkg/exf: |
| 202 |
- exf_getffields.F : add xxg_atemp, xxg_aqh, xxg_swdown, xxg_lwdown, xxg_precip capability |
- exf_getffields.F : add xxg_atemp, xxg_aqh, xxg_swdown, xxg_lwdown, |
| 203 |
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xxg_precip capability |
| 204 |
- exf_wind.F : no need for ALLOW_WSPEED_CONTROL cpp switch |
- exf_wind.F : no need for ALLOW_WSPEED_CONTROL cpp switch |
| 205 |
o pkg/ctrl : |
o pkg/ctrl: |
| 206 |
- ctrl_pack.F, ctrl_unpack.F : omit (un)packing of undefined xx_gentim2d |
- ctrl_pack.F, ctrl_unpack.F : omit (un)packing of undefined xx_gentim2d |
| 207 |
o model/src/load_fields_driver.F : |
o model/src/load_fields_driver.F : |
| 208 |
- move call to CTRL_MAP_GENTIM2D ahead of BULKF_FIELDS_LOAD, EXF_GETFORCING |
- move call to CTRL_MAP_GENTIM2D ahead of BULKF_FIELDS_LOAD, EXF_GETFORCING |
| 209 |
so xx_gentim2d can be applied to e.g. exf fields in a timely manner. |
so xx_gentim2d can be applied to e.g. exf fields in a timely manner. |
| 210 |
o OpenAD verification experiments: |
o OpenAD verification experiments: |
| 435 |
nearly a factor of 10 (but keep in mind there is mostly seaice code in |
nearly a factor of 10 (but keep in mind there is mostly seaice code in |
| 436 |
this experiment): |
this experiment): |
| 437 |
> size mitgcmuv_ad |
> size mitgcmuv_ad |
| 438 |
text data bss dec hex |
text data bss dec hex |
| 439 |
5100659 1216 220458952 225560827 d71c8fb |
5100659 1216 220458952 225560827 d71c8fb |
| 440 |
5339425 1200 1868783272 1874123897 6fb4dc79 (SEAICE_LSR_ADJOINT_ITER) |
5339425 1200 1868783272 1874123897 6fb4dc79 (SEAICE_LSR_ADJOINT_ITER) |
| 441 |
but only a moderate increase of 36% for global_ocean.cs32x15: |
but only a moderate increase of 36% for global_ocean.cs32x15: |
| 442 |
text data bss dec hex |
text data bss dec hex |
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