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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o pkg/ctrl : add generic pre-processing (xx_genarr2d_preproc etc) |
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- remove xx_genarr2d_numsmooth etc |
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- use xx_genarr2d_preproc etc instead |
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- carry out smooth_correl2D at initialization |
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stage rather than during time stepping. |
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- get smoothOpNb from xx_gentim2d_preproc |
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o global_oce_cs32 : |
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- add test of generic ecco capabilities. |
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o pkg/exf/exf_getsurfacefluxes.F : |
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- add to tmpUE/tmpVN rather than re-initializing them (conventional behavior). |
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o pkg/ctrl,ecco : |
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- omit un-necessary arguments to ctrl_cost_gen.F |
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unless ECCO_CTRL_DEPRECATED is defined. |
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o model/src: |
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- when ALLOW_3D_DIFFKR is defined, add a STOP if any of the vertical |
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diffusivity (background) is specified but ignored. |
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o verification: |
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- in testreport, convert hostname to lower case for default output dir name |
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o model, pkg : add useCTRL, useECCO parameters (on/off run time switch). |
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o pkg/dic: add modifications from Hajoon: |
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- add iron sedimentation flux function of the flux of PO4 out of bottom layer |
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- light attenuation: add self-shading effect by climatological Chlorophyll |
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(read from file). |
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o pkg/seaice/seaice_preconditioner.F : fix cpp flags, so that code also |
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compiles when SEAICE_ALLOW_DYNAMICS is undefined |
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o global_oce_llc90,cs32 : ecco_v4 verification exps now use separate |
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AUTODIFF_OPTIONS.h, CTRL_OPTIONS.h, ECCO_OPTIONS.h rather than |
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ECCO_CPPOPTIONS.h (i.e. replacing the deprecated, circumvoluted, |
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approach where CPP_OPTIONS.h includes an omnipotent |
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ECCO_CPPOPTIONS.h that superseeds pkgs '_OPTIONS.h'). |
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o pkg/ctrl/ctrl_map_ini_genarr.F : include GMREDI_OPTIONS.h where |
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ALLOW_3D_KAPGM, ALLOW_3D_KAPREDI (to be added later) belong. |
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o pkg/seaice/SEAICE_SIZE.h : replace ALLOW_AUTODIFF_TAMC with ALLOW_AUTODIFF |
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to avoid needing AUTODIFF_OPTIONS.h anytime SEAICE_SIZE.h is included |
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(it seems that THSICE_SIZE.h, PTRACERS_SIZE.h have the same issue...) |
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o model/src, pkg/smooth, profiles, salt_plume, seaice, exf, ecco, ctrl : |
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add ECCO_OPTIONS.h, AUTODIFF_OPTIONS.h, CTRL_OPTIONS.h when needed |
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- ECCO_OPTIONS.h is needed when including ecco_cost.h, ecco.h |
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- AUTODIFF_OPTIONS.h is needed when including tamc.h, tamc_keys.h |
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- CTRL_OPTIONS.h is needed when including ctrl.h, optim.h, etc |
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o pkg/ctrl,ecco,exf : |
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- remove variables associated with NON-generic costs, |
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unless ECCO_CTRL_DEPRECATED is defined. |
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- remove NON-generic NON-obcs controls, |
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unless ECCO_CTRL_DEPRECATED is defined. |
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o pkg/ctrl : added ctrl_local_params.h |
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o pkg/ecco : added ecco_local_params.h |
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o verification : added ECCO_CTRL_DEPRECATED to most as and oad |
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experiments, which will progressively be removed once the |
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experiments are revised to use only generic controls/costs. |
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checkpoint65f (2014/10/13) |
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o pkg/ctrl, ecco, seaice : minor changes in headers |
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o global_oce_llc90,cs32 : ecco_v4 verification exps now test generic |
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cost function and control capabilities added since checkpoint65c. |
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o pkg/ctrl: regroup all obcs ctrl variables in CTRL_OBCS.h. |
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o pkg/ecco: increase modularity and improve logic |
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- ecco_toolbox.F (new) : basic operations that are often used, |
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including ecco_zero, ecco_cp, ecco_cprsrl, ecco_diffmsk, |
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ecco_addcost, ecco_add, ecco_div, ecco_readbar. |
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- cost_gencal.F (new) : determine filnames and records. |
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- cost_genread.F, cost_generic.F : condense code using ecco_toolbox. |
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- cost_generic.F : use spzeroloc rather than hard-coded -9999, |
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and exploit the above functions leading to more compact code. |
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- cost_genread.F : rm un-necessary arguments, re-arrange args order. |
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- ecco_check.F, ecco_readparms.F : bring logic up to date (using_tpj, |
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using_ers, using_gfo, using_mdt is now only defined within gencost) |
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o pkg/ecco: extend generic cost capabilities |
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- pkg/ecco : added 3D gencost (ALLOW_GENCOST3D), added gencost |
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capabilities via gencost_preproc (+ _c,_i,_r related params), |
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gencost_posproc (+ _c,_i,_r related params), gencost_nrecperiod, |
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gencost_outputlevel arguments to cost_generic |
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- pkg/ecco/cost_genread.F (new) : interface between cost_generic |
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and active_read, making room for gencost_preproc to take effect. |
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Added preproc code ('climmon') to replace GENERIC_BAR_MONTH. |
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- pkg/ecco/cost_generic.F : |
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compute and store misfit maks*(model-data) in localdif that is |
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then used in cost and for output, output misfit if outlev.GT.0 |
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- pkg/ecco/cost_averagesfields.F : depend on gencost_barskip |
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rather gencost_barfile for deciding whether to write barfile |
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- pkg/ecco/ecco_cost_driver.F : extract call to cost_profiles from cost_hyd |
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- pkg/ecco/ecco_cost_init_fixed.F : extract gencost weights from |
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ecco_cost_weights, re-activate ecco_summary, determine gencost_barskip |
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- pkg/ecco/ecco_summary.F : report gencost variables |
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- pkg/ecco/cost_gencost_customize.F : treat case of scatterometer costs |
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o pkg/sea/SEAICE_OPTIONS.h : add ALLOW_COST_ICE, ALLOW_SEAICE_COST_SMR_AREA |
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o pkg/ecco: internal re-organization |
o pkg/ecco: internal re-organization |
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- resolve un-necessary dependancies within pkg/ecco and to pkg/ctrl |
- resolve un-necessary dependancies within pkg/ecco and to pkg/ctrl |
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(rm includes of optim.h and ctrl.h, replace optimcycle with eccoiter, |
(rm includes of optim.h and ctrl.h, replace optimcycle with eccoiter, |
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mv relevant variables definition from ecco_cost.h to ecco.h, |
mv relevant variables definition from ecco_cost.h to ecco.h, |
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make sure gencost routines only include ecco.h) |
make sure gencost routines only include ecco.h) |
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- throughout : add missing CCP switches, rm unused variables, |
- throughout : add missing CCP switches, rm unused variables, |
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and rm un-necessary CPP switches |
and rm un-necessary CPP switches |
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- throughout gencost routines : replace modelstartdate with |
- throughout gencost routines : replace modelstartdate with |
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gencost_startdate when needed |
gencost_startdate when needed |
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- cost_bp_read.F : use arguments, instead of common blocs |
- cost_bp_read.F : use arguments, instead of common blocs |
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so that it can be used also by (new) cost_gencost_bpv4.F |
so that it can be used also by (new) cost_gencost_bpv4.F |
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- ecco_init_varia.F : initialize RHOsumGlob_0, VOLsumGlob_0 |
- ecco_init_varia.F : initialize RHOsumGlob_0, VOLsumGlob_0 |
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- ecco_phys.F : compute etanFull |
- ecco_phys.F : compute etanFull |
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- ecco_readparms.F : rename using_topex as using_tpj, add |
- ecco_readparms.F : rename using_topex as using_tpj, add |
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