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revision 1.1948 by jmc, Sun Dec 8 19:51:21 2013 UTC revision 1.1971 by mlosch, Wed Apr 2 15:58:54 2014 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o pkg/seaice/seaice_growth:
8      - fix a bug in the lateral melt parameterization for SEAICE_ITD
9        in seaice_growth; tempFrz needs to be computed inside the i/j-loop
10      - rearrange loop order for better vector code in the same code block
11      - rewrite the floeDiameter formula to have fewer divisions
12      -  (miraculously) none of this changes the results of seaice_itd
13    o pkg/rw:
14      - add RS version of S/R READ_MFLDS_LEV.
15    o pkg/streamice:
16      - fix the restart test by writing/reading pickup_streamice files.
17    o pkg/seaice:
18      - refine checks for jfnk-related parameters
19      - comment out if statement with SEAICEuseIMEX parameter as long as there
20        is no IMEX code to avoid confusion and surprises
21    
22    checkpoint64u (2014/03/07)
23    o verification/MLAdjust:
24      - rename secondary test suffix:
25         1.leith  -> A4FlxF  + switch to flux-form & add side-drag
26         0.leithD -> AhFlxF  + switch to flux-form
27         0.smag   -> AhVrDv  (use Vorticity-Div. visc form) + add side-drag
28         0.leith  -> AhStTn  (use Strain-Tension visc form) + add side-drag
29    o pkg/mom_vecinv:
30      - remove unused arguments from S/R MOM_VI_HDISSIP & MOM_HDISSIP (as it used
31        to be before mom_calc_visc.F)
32      - skip the call to MOM_CALC_TENSION & MOM_CALC_STRAIN if not needed.
33      - add 2nd copy of vort3 & strain that knows about lateral BC (free/no slip):
34        this is simpler for the adjoint and for diagnostics.
35    o model/src + pkg/momentum:
36      - add input files for  2-D additional Western and Southern cell-edge wall
37         (e.g., to add "thin-wall" where it is =1).
38      - fix sideDrag option for thin-walls with Non-Lin Free-Surf
39        using 2nd hFacZ that is computed from initial (fix domain) hFac
40      - known limitations of thin wall implementation: not yet coded for sigma
41        coords; not working with CD-scheme neither.
42    o pkg/seaice:
43      - rename recently introduced parameters from (wrong name) AB to
44        BDF (backward difference time discretisation)
45      - retire runtime parameters SEAICEuseAB2, SEAICE_abEps
46    o tools/adjoint_options:
47      - remove setting of "OPENAD=true" (now set by command line "genmake2 -oad")
48    
49    checkpoint64t (2014/02/01)
50    o pkg/thsice
51      - corrected store directive fixes thsice adjoint gradient checks
52    o genmake2 & testreport:
53      - add genmake2 option "-oad" to generate a Makefile for OpenAD built and
54        in this case, use tools/adjoint_options/adjoint_oad as default AD optfile.
55        Update testreport accordingly. No need to set "export OPENAD=true"
56        in adjoint_options/adjoint_oad anymore (will be removed later).
57    o pkg/shelfice:
58      - put T & S shelfice forcing into model surfaceForcing_T,_S (for now,
59        only if SHELFICEboundaryLayer=F); Change model/src/external_forcing.F
60        so that surface forcing applies to k=kSurf if using pkg/shelfice.
61    o pkg/ctrl, pkg/grdchk, pkg/ecco:
62      - Changes to make GENARR more modular (i.e. invisible if not used)
63    o model/src/temp_integrate.F and salt_integrate.F
64      - re-include store directives that were removed on Dec 27th.
65    o model/src/external_forcing_surf.F
66      - add storage directives for EmPmR and PmEpR to avoid recomputation of
67        seaice_model in the adjoint that is problematic when seaice_model is
68        turned off in the adjoint. The resolved issue dated back to July when
69        EXTERNAL_FORCING_SURF call was moved.
70        Update global_ocean.cs32x15/*/output_adm.seaice_dynmix.txt accordingly.
71    o pkg/exf/exf_check.F
72      - fix a small bug again (originally found by Wentao Liu, now found again)
73      - streamline error output
74    o pkg/streamice and aim_v23:
75      - replace a few "_EXCH_XY_RL (" with "_EXCH_XY_RL(", so that
76        Apple's /usr/bin/cpp knows what to do:
77        Apple LLVM version 5.0 (clang-500.2.79) (based on LLVM 3.3svn)
78        Target: x86_64-apple-darwin13.0.0
79    
80    checkpoint64s (2014/01/05)
81    o tools/adjoint_options:
82      - switch to fastopt.net TAF server (instead of default fastopt.de) for
83        AD optfiles adjoint_diva & adjoint_f95 (similar to adjoint_default).
84    o model/src:
85      - remove some unnecessary TAF storage directives in forward_step.F and
86        in dynamics.F (note: not always removed by TAF, e.g., double storage
87        of kappaRU,kappaRV in former version of dynamics.F).
88    o model/src & pkg/ptracers:
89      - call directly GAD_IMPLICIT_R & IMPLDIFF + DWNSLP_APPLY from temp_integrate.F
90        salt_integrate.F and ptracers_integrate.F (instead of from thermodynamics.F)
91        and remove ptracers_dwnslp_apply.F & ptracers_implicit.F
92      - call MATRIX_STORE_TENDENCY_EXP for each tracer (in ptracers_integrate.F)
93      - add fZon & fMer as output argument of S/R GAD_CALC_RHS.
94      - update TAF AD-output of experiments global_ocean.90x40x15 (13 for AD-grad).
95    o useSingleCpuInput separates single-CPU input from single-CPU output;
96        for now only implemented for in exf_interp_read.F
97    o verification/advect_xy:
98      - fix missing EXCH call in local version of ini_salt.F and update output.
99    o momentum diagnostics:
100      - fix which deltaT is used in Total-Tendency diagnostics.
101      - fix typo in diagnostics for momentum tendency from AB.
102    o pkg/seaice/seaice_lsr.F: fix an initialisation bug for the
103        SEAICE_VECTORIZE_LSR_ZEBRA option that lead to NaNs on a NEC-SX8
104    
105  checkpoint64r (2013/12/08)  checkpoint64r (2013/12/08)
106  o verification/*/results:  o verification/*/results:
107    - Update reference output of experiments that were passing with just 13 digits    - Update reference output of experiments that were passing with just 13 digits
# Line 108  o verification: Line 206  o verification:
206  o pkg/cost:  o pkg/cost:
207    - define a "final cost function" for each tile, and use GLOBAL_SUM_TILE_RL    - define a "final cost function" for each tile, and use GLOBAL_SUM_TILE_RL
208      (instead of _GLOBAL_SUM_RL) to get the final cost from all procs & threads:      (instead of _GLOBAL_SUM_RL) to get the final cost from all procs & threads:
209      o this fixes global-sum value if multi-threads (since GLOBAL_SUM_TILE_RL      o this fixes global-sum value if multi-threads (since GLOBAL_SUM_RL
210        cannot be applied to var in common block).        cannot be applied to var in common block).
211      o allows to get results independent of tile-per-proc setting (if using      o allows to get results independent of tile-per-proc setting (if using
212        slower GLOBAL_SUM_SEND_RECV option).        slower GLOBAL_SUM_SEND_RECV option).

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