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revision 1.1476 by mlosch, Tue Jul 19 12:54:25 2011 UTC revision 1.1491 by jmc, Fri Aug 12 22:22:50 2011 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o pkg/grdchk:
8      - Assume that all gradient-check position are within the same tile
9        corresponding to global indices (iGloTile,jGloTile) and that
10        positions (i,j indices or nbeg) are local to this tile;
11      - set tile local-indices and proc. number according to tile global-indices;
12      - remove grdchkwhichproc from namelist (retired param);
13      - send adjoint gradient to all procs so that all procs print it to STDOUT;
14      - switch on MPI test for global_ocean.90x40x15 AD test experiment.
15    o adding package bbl (Bottom Boundary Layer)
16      description in MITgcm/pkg/bbl/bbl_description.tex
17      example/test experiment in MITgcm_contrib/bbl
18    o adjoint verifications
19      - changed 5 experiments to multi-tiles
20        * global_ocean.90x40x15
21        * obcs_ctrl
22        * offline_exf_seaice
23        * tutorial_dic_adjoffline
24        * tutorial_tracer_adjsens
25        changed reference output for those that crossed tile boundaries
26        (changed choices of gradient check positions)
27      - with same tiling, switch on MPI test for the last 4 (add SIZE.h_mpi)
28      - temporary bug fix in grdchk_loc.F for obcs
29    o genmake2 & testreport
30      - add target "obj" (just for OBJFILES files) to Makefile;
31      - add option to specify FEXTRAFLAGS on command line.
32    o pkg/mypackage:
33      - remove bi,bj arguments from argument list of S/R MYPACKAGE_CALC_RHS
34    
35    checkpoint63a (2011/08/02)
36    o pkg/diagnostics (velocity potential):
37      - fix velocity-potential calculation when using OBCS: balance net inflow
38        at each level (new S/R OBCS_DIAG_BALANCE).
39      - fix some of the problems with OBCS in stream-function calculation.
40    o pkg/exf/exf_readparms.F
41      - make treatment of optional namelists (EXF_NML_04, EXF_NML_SGRUNOFF,
42        EXF_NML_OBCS) more consistent, so that you need not have these lists
43        in data.exf when they are not used.
44    o optim/optim_readdata.F:
45      - add some output about obcs variables that might help debugging
46      - add a check about nvarlength
47    o pkg/ctrl: once again, fix computation of endrec in s/r ctrl_init_rec
48    o pkg/diagnostics (velocity potential):
49      - fix mask for OBCS (still problems in stream-function with OBCS);
50      - add specific parameter (default = main code CG2D params) for solver;
51      - in case of poor convergence, use solution corresponding to lowest residual.
52    o pkg/seaice/seaice_growth.F: small changes that permit vectorizable
53      adjoint code. In general statements like tmpscal=fld(i,j) are problematic
54      and should be avoided where possible.
55    o model/src (rStar):
56      - include r* effect on reference-state (PhiRef) in totPhiHyd
57        (so that it's really the potential anomaly at the cell center);
58        affect solution only if z* with full pressure in EOS.
59      - test-exp global_ocean.90x40x15: reduce viscA4 (was not stable) and
60        update output (because of z* in totPhiHyd and viscA4 changes);
61      - keep the previous diagnostics as "PHIHYDcR" (closer to potential anomaly
62        @ constant r) until interpolation at constant r is implemented.
63    o pkg/diagnostics
64      - fix RCENTER diagnostics in case cell center is not at interface middle
65  o add code for TEOS-10 (www.teos-10.org, McDougall et al. 2011). Use  o add code for TEOS-10 (www.teos-10.org, McDougall et al. 2011). Use
66    this eos with eosType = 'TEOS10', in data (PARM01). This eos implies    this eos with eosType = 'TEOS10', in data (PARM01). This eos implies
67    that THETA and SALT are "conservative temperature" and "absolute    that THETA and SALT are "conservative temperature" and "absolute
# Line 16  o pkg/seaice/seaice_growth.F Line 74  o pkg/seaice/seaice_growth.F
74      remove then obsolete STORE directives      remove then obsolete STORE directives
75    - fix STORE directives for tice and tices, so that only the    - fix STORE directives for tice and tices, so that only the
76      appropriate part of the fields are stored (and not the entire      appropriate part of the fields are stored (and not the entire
77      field)      field); update global_ocean.cs32x15.seaice AD output.
78    - cosmetic changes: adjust CPP flags and indentation for better    - cosmetic changes: adjust CPP flags and indentation for better
79      legibilty      legibilty
80  o pkg/autodiff: add mnc-output of adBottomDragFld (code contributed by  o pkg/autodiff: add mnc-output of adBottomDragFld (code contributed by
# Line 25  o pkg/gmredi: Line 83  o pkg/gmredi:
83     Add Sub-Meso Eddies parameterisation from Baylor (for now, disabled with TAF),     Add Sub-Meso Eddies parameterisation from Baylor (for now, disabled with TAF),
84     and test it in verification exp. "front_relax.bvp" (update output.bvp.txt)     and test it in verification exp. "front_relax.bvp" (update output.bvp.txt)
85    
86  checkpoint63 (2011/07/11)  checkpoint63  (2011/07/11)
87  o pkg/exch2:  o pkg/exch2:
88   - rename+move: nTiles in W2_EXCH2_PARAMS.h --> exch2_nTiles in W2_EXCH2_TOPOLOGY.h   - rename+move: nTiles in W2_EXCH2_PARAMS.h --> exch2_nTiles in W2_EXCH2_TOPOLOGY.h
89   - exch2 version of Cumul-Sum routine: S/R W2_SET_MAP_CUMSUM set up the   - exch2 version of Cumul-Sum routine: S/R W2_SET_MAP_CUMSUM set up the
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