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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o model/inc: |
9 |
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- change type of PmEpR array (from _RS to _RL) to fix restart (with "-use_r4") |
10 |
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of exp. global_ocean.90x40x15 (Suncronous time-stepping + Real-FW + NonLin-FS) |
11 |
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o pkg/seaice: |
12 |
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- fix calculation of saltFlux and saltPlumeFlux when using SEAICE_SALINITY |
13 |
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o verification/lab_sea, 1D_ocean_ice_column, seaice_obcs, global_ocean.cs32x15 |
14 |
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- updated affected output*.txt files due to salt and saltPlumeFlux bug fix |
15 |
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|
16 |
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checkpoint62w (2011/04/26) |
17 |
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o pkg/mom_fluxform: |
18 |
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- fix calculation of del2u & del2v (no-slip BC) when using Non-Lin Free-Surf. |
19 |
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- use parameter "sideDragFactor" in no-slip BC side-drag part. |
20 |
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- update output of exp. global_ocean.90x40x15 |
21 |
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o pkg/mom_vecinv: |
22 |
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mask del2u & del2v (no effect on results, but cleaner & closer to mom_fluxform) |
23 |
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o update seaice exp.: |
24 |
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use more consistent parameter values (remove "backward compatability only": |
25 |
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ICE2WATR, SEAICE_lhSublim, SEAICE_cpAir, SEAICE_rhoAir + set rhoConstFresh) |
26 |
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related to thermodynamics seaice. Update output (fwd+AD) of exp.: |
27 |
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1D_ocean_ice_column (x2), lab_sea (x8), ioffline_exf_seaice (x2) & seaice_obcs |
28 |
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o update test-exp global_ocean.90x40x15: |
29 |
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o use default CD_CODE_OPTIONS file (Adams-Bashforth on CD Mom & Coriolis). |
30 |
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o increase Overlap size from 2 to 3 (to allow to test bi-harmonic Visc.) |
31 |
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o new pickup-files from a 100.yr run with pkg/down_slope (input.dwnslp params) |
32 |
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o turn on zStar & viscA4 in standard set-up (dir input/) |
33 |
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and update output files: output.txt & output.dwnslp.txt |
34 |
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o new AD-test experiment: obcs_ctrl |
35 |
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(From Matt MITgcm_Contrib/SOSE/BoxAdj) to test OBCS as control vector. |
36 |
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o pkg/dic: |
37 |
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fix two bugs in handling water vapour pressure in carbonate chemistry |
38 |
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and air-sea fluxes. Found by Val Bennington and Galen McKinley |
39 |
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(add DIC Option = WATERVAP_BUG to recover old results) |
40 |
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update output of tutorial_global_oce_biogeo (fwd+AD) & tutorial_dic_adjoffline |
41 |
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o adding allowInteriorFreezing option to check for water below freezing point |
42 |
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at depth and bring the negative heat anomaly to the surface level |
43 |
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o pkgs _fields_load: |
44 |
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- extend GET_PERIODIC_INTERVAL to deal with non-periodic case (from pkg/rbcs) |
45 |
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- use new S/R GET_PERIODIC_INTERVAL in pkgs: |
46 |
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bulk_force, cheapaml, cfc, dic, obcs (+ ctrl/ctrl_get_gen_rec), offline and |
47 |
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rbcs to get interpolation weights and time reccord number. |
48 |
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- fix multi-threading in aim_fields_load.F |
49 |
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- apply EXCH to temp arrays [0,1] after reading in dic_fields_load.F |
50 |
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o external_fields_load: |
51 |
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new S/R GET_PERIODIC_INTERVAL to calculate which time-record (and linear |
52 |
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interpolation weights) to use in a periodic time-series ; do not divide by |
53 |
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time-step to convert to integer: |
54 |
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- this fixes case where externForcingPeriod is not multiple of time-step |
55 |
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(Thanks to Christopher L. Wolfe) |
56 |
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- this fixes case where externForcingPeriod is an odd multiple of time-step |
57 |
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(was wrong by half of time-step); update results of tutorial_global_oce_in_p. |
58 |
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store index of time-record which is currently loaded: |
59 |
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- works without any assumption on sequence of calls to EXTERNAL_FIELDS_LOAD ; |
60 |
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- needed for the adjoint but not yet used because of extensive recomputations; |
61 |
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(to be fixed soon) |
62 |
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|
63 |
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checkpoint62v (2011/04/02) |
64 |
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o verification/1D_ocean_ice_column added to test Ian Fenty's |
65 |
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pkg/seaice_growth.F modifications for improving sea ice code differentiability |
66 |
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o update output of exp4, internal_wave, seaice_obcs, tutorial_plume_on_slope |
67 |
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(new velocity statistics after changing maskInW & maskInS definition) |
68 |
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o pkg/generic_advdiff with OBCS: |
69 |
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use maksInW & maskInS in advective flux and in biharmonic diffusion calculation: |
70 |
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equivalent to assumption of no tracer gradient outside the OB region. |
71 |
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This will affect the results if using obcs+biharmonic diffusion. |
72 |
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update output_adm.txt of experiment bottom_ctrl_5x5 (not expected since no obc) |
73 |
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o pkg/obcs: |
74 |
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change definition of maskInW & maskInS: leave OB edges inside (maskIn=1) |
75 |
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(e.g., maskInW(OB_Ie)=1 ) so that velocity normal-component at OB is still |
76 |
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in Interior region. No impact on solution but affects Velocity monitor stats. |
77 |
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o pkg/ptracers (adjoint) |
78 |
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New option AUTODIFF_PTRACERS_SPLIT_FILES for writing separate |
79 |
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tape file for each tracer |
80 |
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o model/inc/src and pkg/autodiff: add parameters that allow to turn |
81 |
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of parts of the adjoint code at run time. For now, there are only |
82 |
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useKPPinAdMode, useGMrediInAdMode, and useSEAICEinAdMode. These |
83 |
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parameters are set in data.pkg. |
84 |
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This is the lazy coward's version of doing this, but still useful for |
85 |
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debugging. In order to do it right, everything needs to be moved to |
86 |
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pkg/autodiff. |
87 |
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o pkg/autodiff: fix global_sum_tile_ad.F by resetting adsumPhi at |
88 |
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the end; this fixes the adjoint balancing code for open boundaries. |
89 |
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o pkg/ctrl: |
90 |
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- change behavior of xx_${varname}period to be analogous to exf-conventions: |
91 |
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xx_${varname}period = 0., means time-independent control part |
92 |
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xx_${varname}period = -12., means one-year-periodic monthly control part |
93 |
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- introduce helper routine ctrl_init_rec (part of ctrl_init.F) to |
94 |
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clean up ctrl_init a little, remove unused variables |
95 |
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- ctrl_init: fixed the handling of the start/endrec for obcs-variables |
96 |
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- move "call cal_GetMonthsRec" from s/r ctrl_get_gen to s/r ctrl_get_gen_rec |
97 |
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|
98 |
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checkpoint62u (2011/03/15) |
99 |
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o model/src: |
100 |
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- for the adjoint, change NonLin-FreeSurf initialisation sequence: fill-in |
101 |
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h0Fac from INITIALISE_FIXED and reset hFac to h0Fac in INITIALISE_VARIA ; |
102 |
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- in initialise_varia.F (except for ALLOW_DEPTH_CONTROL) remove 2nd call to |
103 |
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INI_DEPTHS, INI_MASKS_ETC & INI_LINEAR_PHISURF. |
104 |
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o pkg/ctrl/obcs/ecco: |
105 |
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- remove obsolete, unused, and partially broken code: |
106 |
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ctrl_obcsvol/ctrl_obcsbal/ctrl_volflux and code within |
107 |
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ALLOW_CTRL_OBCS_BALANCE |
108 |
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- put a stop statement into ecco/cost_obcsvol.F, but also add |
109 |
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cost_obcsvol to ecco_ad_diff.list |
110 |
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o pkg/ecco: fix counting cost function contributions for obcs (code |
111 |
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by Matt M.) and diffkr for diagnostics |
112 |
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o pkg/ecco, pkg/ctrl, pkg/grdchk: |
113 |
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add cost penalty terms for initial uvel, vvel, eta controls |
114 |
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and I/O for prior error files |
115 |
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o pkg/mdsio: |
116 |
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move mds_check4file.F from eesupp/src to mdsio_check4file.F ; add option |
117 |
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(new argument) to check for tiled file in mdsioLocalDir : this fix the |
118 |
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restart from pickup_som , pickup_dic (& dic_co2atm) with mdsioLocalDir. |
119 |
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o pkg/ctrl: |
120 |
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- ctrl_obcsbal.F, ctrl_obcsvol.F: replace last calls of ctrl_getrec by |
121 |
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ctrl_get_gen_rec, put a stop statement into ctrl_getrec. Remove |
122 |
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unused and superfluous variables |
123 |
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- ctrl_get_gen_rec.F: catch the case of xx_genperiod=0. |
124 |
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o pkg/ecco |
125 |
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- enable adjoint of Stevens OB |
126 |
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o pkg/ctrl/ecco/grdchk: |
127 |
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- remove global declaration of tmpfldx/yz and tmpfldx/yz2. |
128 |
|
Fortunately, we do not have any tests for the numerous cpp-flagged |
129 |
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option of "obcs as control parameters" so we will never know |
130 |
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if this is an improvement (but at least now things compile). |
131 |
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- remove an obsolete initialization from ecco_cost_init_barfiles.F |
132 |
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- fix some problems within never used ifdefs to make the code compile |
133 |
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o pkg/obcs: |
134 |
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- Refine Interior mask definition to work with more complex OB (e.g. |
135 |
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if OB_Ie < OB_Iw); In case default setting is not sufficient, allows to |
136 |
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read in Interior mask from file. Check if Interior mask is consistent |
137 |
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with OB list of indices. |
138 |
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o pkg/seaice |
139 |
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- beginning code for a seaice tracer package, |
140 |
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but currently only used for seaice age: SEAICE_AGE |
141 |
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SEAICE_num = 4 |
142 |
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iTracer = 1: area-weighted ice age |
143 |
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= 2: volume-weighted ice age |
144 |
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= 3, 4: template for one-year vs. multi-year ice |
145 |
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data.seaice has new namelist SEAICE_PARM03 for arrays related to |
146 |
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SEAICE_num |
147 |
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|
148 |
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checkpoint62t (2011/03/05) |
149 |
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o pkg/obcs: |
150 |
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- obcs_apply_uv.F: change to a 2 steps method, first tangential component; |
151 |
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then normal component. This ensures that the normal component is set |
152 |
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correctly even when it conficts with tangential setting from an other OB. |
153 |
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Affects results of test-experiment seaice_obcs: update the output.txt |
154 |
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o pkg/obcs: |
155 |
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- add code to monitor statistics of dynamical fields at OB. |
156 |
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- take OBCS_BALANCE code out of obcs_calc.F into new S/R OBCS_BALANCE_FLOW : |
157 |
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- fix to OBCS_BALANCE code (right hFac ; deal with simple OB intersection). |
158 |
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- change default: balance the Net inflow through all OB (instead of balancing |
159 |
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each OB separately); keep the old method if setting OBC_balanceFacX < 0. |
160 |
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- switch on useOBCSbalance in dome experiment: only correct Western OB outflow |
161 |
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to match Nortern OB inflow (OBCS_balanceFacN=0). |
162 |
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o pkg/seaice: |
163 |
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- redefined actual sea ice age to be ICEAGE/HEFF ifdef SEAICE_AGE_VOL |
164 |
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o pkg/seaice (seaice_growth v 1.113): |
165 |
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- reverting seaice_growth to v 1.111 in order to have code with exact bit |
166 |
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compatibility with MITgcm_contrib/ifenty/Fenty_seaice_thermo_code_merge |
167 |
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CPP option SEAICE_OCN_MELT_ACT_ON_AREA removed in v 1.112 is reintroduced |
168 |
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runtime flag SEAICEareaFormula is kept but is inactive |
169 |
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o model/src: |
170 |
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- add new param to scale curvilinear grid distance and area when using |
171 |
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a different sphere radius from the grid-files. |
172 |
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- test/check multi-threads EXCH applied to local variable (cg2d_x) |
173 |
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o adjoint: |
174 |
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- enable adjoint of Stevens OB |
175 |
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- add dummy_in_dynamics to enable extraction of ADJrhoinsitu |
176 |
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(a bit delicate because of potentially modified adj. common block structure; |
177 |
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current switch is ALLOW_AUTODIFF_MONITOR_DIAG, could be changed later) |
178 |
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|
179 |
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checkpoint62s (2011/02/15) |
180 |
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o pkg/seaice (seaice_growth v 1.112): |
181 |
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- introduce SEAICEareaFormula run time parameter, which selects the recipe for |
182 |
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computing the ice cover tendency from effective thickness tendencies. Include |
183 |
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Ian Fenty's formula. |
184 |
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- remove 'undef SEAICE_OCN_MELT_ACT_ON_AREA' which may now be achieved using |
185 |
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SEAICEareaFormula. |
186 |
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- simplify notations for the various d_HEFF/d_AREA terms. |
187 |
|
o pkg/gmredi: |
188 |
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- add Boundary-Value-Problem bolus transport (Ferrari etal, OM 2010) code |
189 |
|
from Christopher Wolfe (UCSD); add partial cell factor in vertical derivative; |
190 |
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add a verification test-run (front_relax.bvp) to test GM_useBVP. |
191 |
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o pkg/seaice (seaice_growth v 1.111): |
192 |
|
- for SEAICE_DO_OPEN_WATER_GROWTH, replace Gael's implementation with Ian's. |
193 |
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- the new SEAICE_DO_OPEN_WATER_MELT allows open-water air-sea heat fluxes to |
194 |
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also melt ice. |
195 |
|
o pkg/seaice: |
196 |
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- McPhee formula for Ice-Ocean fluxes (provided by Ian Fenty). |
197 |
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- can be used by #define MCPHEE_OCEAN_ICE_HEAT_FLUX in SEAICE_OPTIONS.h |
198 |
|
o pkg/cheapaml: |
199 |
|
- from Nico Wienders: New version of this package. |
200 |
|
o pkg/flt: |
201 |
|
- add CPP options to prevent floats to re-enter the opposite side of |
202 |
|
a periodic domain (default: keep periodicity) |
203 |
|
o pkg/gmredi: |
204 |
|
- apply exchange to GM_PsiX,GM_PsiY to get valid values near CS-corners |
205 |
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(needed for multi-dim advection). |
206 |
|
- switch on GM Advective form in global_ocean.cs32x15 and update output.txt |
207 |
|
o model/src: |
208 |
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- fix wrong re-setting of addMass array (ALLOW_ADDFLUID) for atmospheric run. |
209 |
|
o tutorial_tracer_adjsens |
210 |
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- extend to NLFS and replace maskC by hFacC |
211 |
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(change reference output accordingly) |
212 |
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|
213 |
|
checkpoint62r (2011/01/24) |
214 |
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o testreport: |
215 |
|
- add option -deloutp (-do) to remove output file after successful run |
216 |
|
- add option -mfile (-mf) for MPI machile-file and for each test-exp, |
217 |
|
extract exact list of procs from this file ; adjust COMMAND by |
218 |
|
replacing TR_MFILE & TR_NPROC with local machile-file & Nb of MPI procs. |
219 |
|
o pkg/ecco: replace old ineffective way of penalizing deviations from |
220 |
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first guess (of obcs) with code by Matt Mazloff |
221 |
|
o pkg/ctrl: add code that allows the use of ALLOW_OBCS?_CONTROL without |
222 |
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exf/cal |
223 |
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- ctrl_init: fix initialisation (computation of diffrec) for obcs-ctrl |
224 |
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and handle case of obcs?period == 0 |
225 |
|
Not affected by these changes: There is still an inconsistency in |
226 |
|
the computation of start/endrec for the obcs variables for ALLOW_CAL |
227 |
|
defined (see comment by Menemenlis, 7-Mar-2003) |
228 |
|
- make S/R ctrl_get_gen_rec return something meaningful even if |
229 |
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ALLOW_CAL is not defined |
230 |
|
- ctrl_getobcs?: simplify code so that it does not need to use |
231 |
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S/R exf_swapfields |
232 |
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o testreport: |
233 |
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allow to test MPI with different number of processors for each experiment: |
234 |
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create file "SIZE.h.mpi" in each build dir. |
235 |
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Note: update of "-command" argument not yet implemented. |
236 |
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o model/src, pkg/autodiff, pkg/ecco, pkg/seaice: |
237 |
|
alleviate the need for additional 3D tapes when using |
238 |
|
the non-inear free surface in the adjoint. This is done |
239 |
|
by adding an 'update' of hfacc etc. to their current |
240 |
|
value at the beginning of forward_step.F. |
241 |
|
o pkg/seaice |
242 |
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seaice_lsr: move stress-divergence computations out of outer pseudo- |
243 |
|
timestepping loop |
244 |
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o pkg/obcs/obcs_prescribe_read.F: move 'CALL OBCS_EXTERNAL_FIELDS_LOAD' |
245 |
|
up, so that the calls of the ctrl_* subroutines are really at the end |
246 |
|
of the routine. |
247 |
|
o pkg/gmredi: |
248 |
|
allow to specify a 2-D horizontal map and a 1-D vertical profil |
249 |
|
as scaling factor for Isopycnal diffusivity (Redi) and GM diffusivity. |
250 |
|
o pkg/seaice: |
251 |
|
move lsr iterations from seaice_dynsolver to seaice_lsr. |
252 |
|
o pkg/seaice: |
253 |
|
reduce memory footprint of seaice mutldim advection tapes, |
254 |
|
by using a 2D tape independent of the generic_advdiff ones, |
255 |
|
and setting GAD_AREA=1 etc. rather than GAD_AREA=101 etc. |
256 |
|
|
257 |
|
checkpoint62q (2010/12/29) |
258 |
|
o model/src: |
259 |
|
- check horizontal grid-spacing for unset or zero/negative values. |
260 |
|
- change AD test hs94.1x64x5 to be truly a 2-D set-up. |
261 |
|
o pkg/flt: |
262 |
|
- use (recent) mdsio S/R MDS_READVEC_LOC instead of local FLT_MDSREADVECTOR |
263 |
|
- precision of input and output files set according to readBinaryPrec |
264 |
|
and writeBinaryPrec (previously always 64.b), pickup remains at 64 bits. |
265 |
|
- initial float position from tiled file was not converted to index space |
266 |
|
(looks like a bug): fixed to make it similar to initial pos. global file. |
267 |
|
o global_ocean.cs32x15: |
268 |
|
change SIZE.h of AD set-up to get same tiling as with MPI. |
269 |
|
Update output_adm, output_adm.thsice (pass@14) & output_adm.seaice (fail@11) |
270 |
|
o model/src: |
271 |
|
add flag to control printing of domain fields (bathymetry, hFac ...) in |
272 |
|
ini_mask_etc (call to plot_fieds_xy*). |
273 |
|
o pkg/thsice: |
274 |
|
if useEXF, some forcing fields are not valid in overlap: fixed by computing |
275 |
|
over the interior only + apply EXCH at the end (like with SEAICE advection). |
276 |
|
o pkg/mdsio: |
277 |
|
- add 2 arguments to S/R MDS_PASS_R4/8toRL/S for overlap size of buffer |
278 |
|
to copy to/from, so that it can be used to replace MDS_PASS_WH_R8toRL/RS. |
279 |
|
- change barrier call for safe multi-threads access to 3-D shared buffer. |
280 |
|
- MDS_READ/WRITEVEC_LOC use buffers from MDSIO_BUFF_3D.h (instead of local ones) |
281 |
|
- replace call to MDS_PASS_WH_R4/8toRL with call to MDS_PASS_R4/8toRL and |
282 |
|
remove the 4 S/R MDS_PASS_WH_R4/8toRL/S. |
283 |
|
o pkg/flt: |
284 |
|
- add fourth-order Runge-Kutta integration |
285 |
|
- add basic exch2 support (only 1 facet supported so far!) |
286 |
|
o pkg/mdsio+rw: |
287 |
|
new S/R to read local (or tile independent) vector (read counterpart of |
288 |
|
mds_writevec_loc, and front-end write_glvec_rl/rs). |
289 |
|
o global_ocean.cs32x15: additional input_ad.seaice experiment |
290 |
|
that uses pkg/seaice rather than pkg/thsice. |
291 |
|
(using multidim advection for seaice) |
292 |
|
o towards more F95 syntax for array specification in namelist: |
293 |
|
- change "data.diagnostics" (data.ptracers was changed before checkpoint62p) |
294 |
|
of all verification experiments. |
295 |
|
e.g.: line: fields(1,3)='ETAN ','ETANSQ ', |
296 |
|
was changed to: fields(1:2,3)='ETAN ','ETANSQ ', |
297 |
|
- finish adding "-DNML_EXTENDED_F77" to DEFINES list in pgf77 and g77 optfiles |
298 |
|
o global_ocean.cs32x15: additional input.seaice experiment |
299 |
|
that uses pkg/seaice rather than pkg/thsice. |
300 |
|
|
301 |
|
checkpoint62p (2010/12/17) |
302 |
|
o pkg/thsice: rename (ad tape index) iicekey as ticekey, and move it |
303 |
|
to THSICE_SIZE.h to avoid conflict with pkg/seaice. |
304 |
|
o pkg/seaice: add seaice_diffusion.f seaice_map_thsice.f to adjoint. |
305 |
|
allow for use of multim. advection in seaice adjoint. |
306 |
|
o pkg/seaice: add diagnostics for snow precipitation and sublimation flux |
307 |
|
- first attempt to close budgets by taking into account the freshwater |
308 |
|
flux implied by the sublimation of snow and ice. So far only the |
309 |
|
volume budget is closed, turn on with soon-to-be-retired-again CPP-Flag |
310 |
|
SEAICE_ADD_SUBLIMATION_TO_FWBUDGET |
311 |
|
o eesupp/src: |
312 |
|
new S/R with new option (NML_EXTENDED_F77) to change array specification |
313 |
|
from F95 standard to commonly accepted extended F77 form. |
314 |
|
This would allow to use F95 syntax in namelist (needed with gfortran 4.4.5) |
315 |
|
and to revert back to the original syntax (with -DNML_EXTENDED_F77) |
316 |
|
for less tolerant f77 compiler (e.g., pgf77, g77). |
317 |
|
o globalFiles: |
318 |
|
commented out in parameter file "data" since it's not safe with MPI |
319 |
|
(e.g., wrong on aces); keep it if useSingleCpuIO=T (but not doing much |
320 |
|
in this case); no longer commented out in restart test (tst_2+2). |
321 |
|
o add adTapeDir to specify a special directory where adjoint tapes are |
322 |
|
written/read (adread_adwrite.F). adTapeDir is specified in data/PARM05 |
323 |
|
and cannot be used together with mdsioLocalDir. |
324 |
|
o nesting pkgs: |
325 |
|
- packages_init_variables : put call to OBCS_INIT_VARIABLES in last position |
326 |
|
- update Gianmaria's Nesting pkgs (from Contrib/nesting_sannino) |
327 |
|
- add parameter files + utils dir + output from short run on beagle. |
328 |
|
o pkg/seaice: |
329 |
|
fix seaice_growth.F store directives; update results of exp. lab_sea.ad |
330 |
|
o pkg/seaice: explicitly store tsurfloc in seaice_solve4temp.F to avoid |
331 |
|
unnecessary copying in adjoint code, requires new parameter NMAX_ITER |
332 |
|
|
333 |
|
checkpoint62o (2010/11/25) |
334 |
|
o pkg/exf: |
335 |
|
- change CPP option EXF_VERBOSE to run-time logical param exf_verbose. |
336 |
|
o pkg/seaice: |
337 |
|
- seaice_ocean_stress: split a loop for better vectorization of the |
338 |
|
adjoint code |
339 |
|
- seaice_growth.F: fix bug in conservation of freshwater connected to |
340 |
|
capping of heff, put contribution into d_HEFFbyNEG |
341 |
|
- replace irritating parameters SEAICE_latentWater/Ice and SEAICE_sensHeat |
342 |
|
by something more sensible (parameters that are what their name implies) |
343 |
|
- change some defaults, so that by default exf-parameters are used for |
344 |
|
things like rhoAir, cpAir,latent/sensible heat parameters, in order |
345 |
|
to reproduce the old results, many data.seaice now contain funny values |
346 |
|
for cpAir and latent heat of sublimation |
347 |
|
o packages_readparms.F: move exf_readparms up in line so that |
348 |
|
exf-parameters are visible for other packages (e.g. seaice) |
349 |
|
o debugMode & debugLevel=2: |
350 |
|
- differentiate between debugMode & debugLevel=2: |
351 |
|
debugMode: controls printing of debug messages (sequence of S/R calls). |
352 |
|
debugLevel: controls printing of algorithm intermediate results and stats. |
353 |
|
- remove "if debugLevel=2 => debugMode" but keep "debugMode => debugLevel=2"; |
354 |
|
=> allows to print debug-stats without all sequence of call messages. |
355 |
|
- switch control of debug print from debugLevel to debugMode in many S/R. |
356 |
|
o pkg/obcs (obcs-sponge): |
357 |
|
fix bug that was introduced on Oct 25 (in dynamics.F v1.151): put back the |
358 |
|
call to OBCS_PRESCRIBE_EXCHANGES (need to exch gU,gV when using obcs-sponge) |
359 |
|
o pkg/generic_advdiff: |
360 |
|
- record overlap minimum size for each advection scheme; |
361 |
|
- refine criteria on overlap minimum size; |
362 |
|
- check and stop (in gad_check) if overlap size is too small. |
363 |
|
o pkg/obcs: |
364 |
|
- with ptracers: remove multiple calls to obcs_apply_ptracer (only done |
365 |
|
once, in ptracers_implicit.F) |
366 |
|
- with seaice: remove test on empty file name in obcs_apply_seaice (always |
367 |
|
apply OB values when tile has OB) |
368 |
|
o model/src, coriolis setting: |
369 |
|
- integer parameter "selectCoriMap" (=0,1,2) replaces 3 logical |
370 |
|
useConstantF, useBetaPlaneF, useSphereF ; can now read coriolis from |
371 |
|
files (selectCoriMap=3) with any grid. |
372 |
|
- add parameter "fPrime" for constant second Coriolis coeff (default=0). |
373 |
|
o pkg/seaice/seaice_growth.F: |
374 |
|
a few cosmetic changes that reduce the number of lines of code |
375 |
|
o pkg/obcs: add boundary conditions following Stevens (1990) |
376 |
|
- the code follows old MOM/NAOSIM code |
377 |
|
- so far it is only implemented for the eastern and western boundaries |
378 |
|
and NOT for pTracers |
379 |
|
o pkg/rbcs: |
380 |
|
- replace rbcsInIter by rbcsForcingOffset, the time in seconds at the |
381 |
|
beginning of the first rbcs forcing period. |
382 |
|
- add option rbcsSingleTimeFiles that makes rbcs read forcing data like the |
383 |
|
offline package, i.e., one file per time, labeled by iteration number; |
384 |
|
deltaTrbcs sets the timestep with which the data was generated; |
385 |
|
rbcsIter0 is the forcing iteration corresponding to rbcsForcingOffset. |
386 |
|
- rbcsForcingCycle=0 makes forcing non-cyclic. |
387 |
|
- make arithmetic safe for negative times and odd forcing periods. |
388 |
|
|
389 |
|
checkpoint62n (2010/11/09) |
390 |
|
o pkg/seaice: |
391 |
|
fix masking in free-drift S/R ; update results of exp. lab_sea.fd |
392 |
|
o pkg/obcs: |
393 |
|
New S/R to copy tracer value from the OB location to narrow band region |
394 |
|
(width = same as overlap) beyond the OB: preserve OB value (needed for |
395 |
|
high-order scheme) which were overwritten by EXCH call if in overlap |
396 |
|
region. Applied to theta, salt, ptracer and advected seaice variables. |
397 |
|
With seaice: use maskInC in similar way as in gad_advection.F, |
398 |
|
in seaice_advection.F and advect.F. |
399 |
|
Update output of experiment seaice_obcs and change exp4 to test OBCS with |
400 |
|
4th order Adv.Scheme. for pasive salt and ptracer. |
401 |
|
o tools/genmake2: |
402 |
|
- when looking for an optfile (not specified), only search for Fortran compiler |
403 |
|
(remove sym-link test + setting of CPP + makedepend check + C-compiler check) |
404 |
|
- in get_fortran_c_namemangling: use "$CC $CFLAG" to compile C test programm |
405 |
|
(instead of "$MAKE genmake_test.o" since an existing Makefile can be wrong) |
406 |
|
- set default for CPP to "cpp -traditional -P" (was the case without specifying |
407 |
|
an optfile, but otherwise default was just "cpp". |
408 |
|
- comment out PLATFORM=$p_PLATFORM (no idea where p_PLATFORM comes from) |
409 |
|
- when "CC" is not set in the optfile, look for possible C compiler |
410 |
|
(instead of just setting CC=cc) |
411 |
|
- put back version v.169 modif (from 2008/02/15), was dropped in v.173 changes: |
412 |
|
=> add a ".F" to ".o" rule for source files with no "#include" (such as |
413 |
|
port_rand.F); otherwise, default ignores FOPTIM and just uses FFLAGS. |
414 |
|
- move gfortran before g77 in list of possible Fortran compiler (consistent |
415 |
|
with reference compiler switch from g77 to gfortran) |
416 |
|
o pkg/seaice: |
417 |
|
o remove SEAICE_OLD_AND_BAD_DISCRETIZATION-code, add a test to |
418 |
|
seaice_check that stops the model, when the CPP flag is used. |
419 |
|
o seaice_growth.F: make capping of ice volume conserving by returning the |
420 |
|
capped ice as freshwater to EmPmR. This does not change the verification |
421 |
|
experiments but will change runs where the capping is acutally active |
422 |
o change reference platform+compiler from faulks+g77 to baudelaire+gfortran |
o change reference platform+compiler from faulks+g77 to baudelaire+gfortran |
423 |
(except the 2 fizhi test exp.); update output of exp.: bottom_ctrl_5x5, |
(except the 2 fizhi test exp.); update output of exp.: bottom_ctrl_5x5, |
424 |
global_ocean.cs32x15 (icedyn, thsice, AD thsice), global_ocean_ebm (AD), |
global_ocean.cs32x15 (icedyn, thsice, AD thsice), global_ocean_ebm (AD), |
445 |
Default (pkg/seaice/SEAICE_OPTIONS.h) is to define SEAICE_SOLVE4TEMP_LEGACY |
Default (pkg/seaice/SEAICE_OPTIONS.h) is to define SEAICE_SOLVE4TEMP_LEGACY |
446 |
but leave SEAICE_GROWTH_LEGACY undef ; For now, keep verification exp |
but leave SEAICE_GROWTH_LEGACY undef ; For now, keep verification exp |
447 |
unchanged (SEAICE_GROWTH_LEGACY defined in */code*/SEAICE_OPTIONS.h) |
unchanged (SEAICE_GROWTH_LEGACY defined in */code*/SEAICE_OPTIONS.h) |
|
For OBCS, close southern and western boundaries for sea ice solver |
|
|
based on myYGlobalLo and myXGlobalLo instead of OB_Js and OB_Iw. |
|
448 |
o pkg aim (2010/10/26): |
o pkg aim (2010/10/26): |
449 |
- Introduce ALLOW_INSOLATION, moving toward a more general incoming solar radiation |
- Introduce ALLOW_INSOLATION, moving toward a more general incoming solar radiation |
450 |
formulation with obliquity, eccentricity, ... as run-time parameters, |
formulation with obliquity, eccentricity, ... as run-time parameters, |