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revision 1.1222 by jmc, Wed Jan 20 04:11:33 2010 UTC revision 1.1251 by jmc, Tue Apr 13 17:12:55 2010 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7  o momentum:  o pkg/obcs:
8      - fix wrong index in OBCS_SPONGE_V for Eastern-OB (reported by David Hebert).
9    o pkg/dic:
10      -fix bug in fe_chem.F for multi-tile (nSx*nSy > 1) set-up;
11        (note: not presently tested in any forward verification exp.)
12       update tutorial_global_oce_biogeo AD output file.
13    o pkg/exf:
14      - account for the variation of albedo as a function of zenith angle
15        by defining ALLOW_ZENITHANGLE in EXF_OPTIONS.h
16    o build_options:
17     - rename "linux_ia64_ifort+mpi_ice_nas" to "linux_amd64_ifort+mpi_ice_nas"
18    o pkg/dic:
19      change DIC atmos-CO2 box (method 3, dic_int1=3) initialisation & restart:
20      - use binary pickup file for restart;
21      - initialise atmos-CO2 box from dic_pCO2 parameter;
22      - fix multi-threaded.
23    o pkg/rbcs:
24     - clean-up RBCS code: add RBCS_OPTIONS.h file ; fix multi-threaded ;
25       change (+ fix IO calls) type of array RBC_mask from _RL to _RS.
26     - add RBCS to exp4 passive tracer 01 (rbcs was previously untested)
27       and update output.txt
28    o pkg/kpp:
29     - add diagnostics for KPP non-local flux of Temp, Salinity and pTracers;
30     - change diagnostic of KPP non-local term: output average of KPPghat*KPPdiffKzS
31       (= ratio of KPP non-local (salt) flux relative to surface-flux) when
32       using pkg/timeave & pkg/diagnostics (diag 'KPPghatK' replaces 'KPPghat ');
33     - change pkg/offline to read-in average KPPghat*KPPdiffKzS from file
34       KPP_ghatKFile (instead of the average of KPPghat from file KPP_ghatFile).
35    o pkg/offline:
36      fix bug in S/R OFFLINE_FIELDS_LOAD regarding surfaceForcing conversion factor
37      (bug was added in version 1.10 on 2007-08-23).
38    o pkg/offline:
39      - no need to specify periodicExternalForcing, etc ... to use offline pack
40      - offline input files no longer just single prec --> parameter offlineLoadPrec
41    o verification/lab_sea:
42      change AD test to multi-tile setup and update all 4 AD output.
43      NOTE: while cost function values remain very similar,
44      gradients are very different, although gradient checks are self-consistent
45      Should try to get to the bottom of this (cost function summation order?)
46    o pkg/dic:
47      in carbon_chem.F, replace log10 (AUTODIFF) with explicit form to avoid
48      a weakness of TAF that drops part of double precision in log10 derivative.
49      <= changes removed since problem has been fixed in current TAF version 1.9.71
50      update AD output of exp. tutorial_dic_adjoffline & tutorial_global_oce_biogeo.
51    o pkg/ecco:
52      add missing "_d 0" in cost_readers.F, cost_readtopex.F & cost_readtopexmean.F
53      update all 4 lab_sea AD output.
54    
55    checkpoint62d (2010/03/22)
56    o build_options:
57      remove '-r8' (and '-i4') from linux_*pgf and linux_*ifort optfiles.
58    o remove unbalanced quote (single or double) in commented line of source code
59      (may cause some warning with some preprocessor/makedepend versions).
60    o pkg/seaice:
61      fix seaice_model.F for adjoint (gael) and update AD results of experiments
62       lab_sea (std + evp + noseaicedyn) and offline_exf_seaice.
63    o testreport:
64      add option '-runonly' (short: '-ro') to just do the run part (without make).
65    o eesupp: remove JAM communication code (obsolete).
66    o add option to genmake2 & testreport to switch "_RS" type to "real*4"
67      (if allowed in CPP_EEOPTIONS.h); update default CPP_EEOPTIONS.h and return
68      to default CPP_EEOPTIONS.h for exp. inverted_barometer & solid-body.cs-32x32x1
69      (update also the output).
70    
71    checkpoint62c (2010/03/02)
72    o tools/build_options :
73       move (some) old optfiles from build_options/ to build_options/unsupported/
74    o model/src and pkg/exf
75       surface relaxation -- separating data and data.exf options
76       The point is to ensure that we specify the surface relaxation
77       either in data or in data.exf (but not half and half) and to
78       avoid an accidental relaxation to 0 (which happened if a time
79       scale was specified but the file name was left empty)
80    o model/src model/inc and pkg/mom_common
81       ALLOW_3D_VISCAH/ALLOW_3D_VISCA4 => 3D specification of Viscosity
82       => addition to the viscosity field as computed by others schemes
83    o tools/build_options:
84      - rename "_generic_mpi" -> "+mpi_generic" (like other "+mpi" optfile)
85        but keep the former optfile for few weeks for smooth transition
86    o pkg/ecco
87      - allow user defined cost function contributions
88            CPP: ALLOW_USERCOST_CONTRIBUTION
89            USAGE: compute contributions in cost_usercost_all.F
90      - note: this is identical to what ALLOW_GENCOST_CONTRIBUTION once was.
91          the two options are complementary.
92    o pkg/smooth
93      - migration from contrib to the main repository
94    
95    checkpoint62b (2010/01/26)
96    o pkg/monitor:
97      - change back mon_printstats_rl.F & mon_stats_rl.F and add a stop
98        (in case someone forgot to update customized pieces of code)
99    o nonHydrostatic:
100      - add Non-hydrostatic free-surface form (selectNHfreeSurf=1)(not fully tested);
101      - add a simple 2-D experiment (short_surf_wave) to test it.
102    o pkg/icefront:
103       adding the shell of, and the hooks to, a new package that
104       will model melting and freezing of vertical glacier ice fronts
105    o momentum:
106    add diagnostics of momentum tendency from Hydrostatic pressure gradient    add diagnostics of momentum tendency from Hydrostatic pressure gradient
107     (without surf.pressure term: would need a 2nd filling since implicit term).     (without surf.pressure term: would need a 2nd filling since implicit term).
108  o add 3 "_d 0"s so that fizhi compiles with xlf on iblade, and replace  o add 3 "_d 0"s so that fizhi compiles with xlf on iblade, and replace
109    two " &end" by " &" (in fizhi-cs-*) because S/R NML_SET_TERMINATOR    two " &end" by " &" (in fizhi-cs-*) because S/R NML_SET_TERMINATOR
110    cannot deal with the former    cannot deal with the former
111  o cleaning:  o cleaning:
112    - remove all (except OpenAD) old TLM output from results_ad dirs.    - remove all (except OpenAD) old TLM output from results_ad dirs.
113    - remove unused S/R (MDSWRITEMETA, DIAGNOSTICS_ADD2LIST, old DFILE IO S/R)    - remove unused S/R (MDSWRITEMETA, DIAGNOSTICS_ADD2LIST, old DFILE IO S/R)
114    - comment out maskH definition (replaced by maskInC)    - comment out maskH definition (replaced by maskInC)
115  o pkg/monitor:  o pkg/monitor:
116    - change mon_printstats_rl.F & mon_stats_rl.F (were similar to mon_writestats_rl    - change mon_printstats_rl.F & mon_stats_rl.F (were similar to mon_writestats_rl
117      & mon_calc_stats_rl) to be the RL pendant to mon_printstats_rs & mon_stats_rs.      & mon_calc_stats_rl) to be the RL equivalent of mon_printstats_rs & mon_stats_rs.
118    
119  checkpoint62a (2010/01/15)  checkpoint62a (2010/01/15)
120  o model/src:  o model/src:
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