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revision 1.1207 by jmc, Mon Dec 21 02:11:36 2009 UTC revision 1.1222 by jmc, Wed Jan 20 04:11:33 2010 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7    o momentum:
8      add diagnostics of momentum tendency from Hydrostatic pressure gradient
9       (without surf.pressure term: would need a 2nd filling since implicit term).
10    o add 3 "_d 0"s so that fizhi compiles with xlf on iblade, and replace
11      two " &end" by " &" (in fizhi-cs-*) because S/R NML_SET_TERMINATOR
12      cannot deal with the former
13    o cleaning:
14      - remove all (except OpenAD) old TLM output from results_ad dirs.
15      - remove unused S/R (MDSWRITEMETA, DIAGNOSTICS_ADD2LIST, old DFILE IO S/R)
16      - comment out maskH definition (replaced by maskInC)
17    o pkg/monitor:
18      - change mon_printstats_rl.F & mon_stats_rl.F (were similar to mon_writestats_rl
19        & mon_calc_stats_rl) to be the RL pendant to mon_printstats_rs & mon_stats_rs.
20    
21    checkpoint62a (2010/01/15)
22    o model/src:
23      - bottom pressure diagnostic: correct for r* (when nonlinFreeSurf >= 4)
24    o pkg/diagnostics:
25      - add optional level number diagnostics (i.e., level number to be define
26        explictly with S/R DIAGNOSTICS_SETKLEV) with parser-code(10)="X".
27      - strictly check for valid parser-code(10) ;
28      - check if adding diag to the list from the right place.
29    o pkg/longstep:
30      - change parameters and fix tracer conservation with rstar/nonlinear free surface
31    o diagnostics:
32     - in all pkgs, replace remaining calls to old S/R DIAGNOSTICS_ADD2LIST with newer
33       S/R DIAGNOSTICS_ADDTOLIST ; fix seaice VICE diagnostics.
34    o pkg/diagnostics:
35     - Add option for writing vertical integral (sum of selected levels) of an output
36        field instead of writing output field levels. Activate this option on a per
37        output-file basis, by setting the 2nd character of fileflag to 'I'.
38     - Add field-specific information relative to level integral in 3rd postion
39        of parser diagnostics code (gdiag): " "=cumulate levels, "R"=integrate
40        vertically (x level-thickness x hFac), "r"=same but without hFac.
41    o do_the_model_io:
42      - pass end-of-model-run flag as argument, from forward_step to diagnostics_write:
43        in case useSIGREG, will write (averaged) diagnostics (if dumpAtLast) before
44        writing pickups and stopping.
45    o pkg/diagnostics (for now, only with mdsio):
46      - write time information to meta file (and modify accordingly rdmds.m) :
47        time-averaged diagnostics output: write starting and ending time of the
48        time-averaging interval ; snap-shot diagnostics output remains unchanged;
49    o pkg/timeave:
50      - S/R TIMEAVE_NORMALIZ: change size of cumulated-time array (was previously
51        always Nr), now assumed to be equal to number of levels of averaged field;
52        only used for DIC_COST monthly mean arrays: this fixes dic_aver_final.F
53    o pkg/sbo:
54      - fix ocean bottom pressure global-average & 2-D time-ave output (was
55        neither initialised nor filled).
56      - add starting iteration in suffix of global-average output file
57        (to avoid over-writing the file after a restart)
58      - use standard MDSIO pkg S/R instead of SBO_WRITEVECTOR (fix byte-swap Pb).
59    o time-average:
60      - use simple cumulative-time array (no k index) in all pkgs: {PKG}_timeAve(bi,bj)
61        (pkgs: aim_v23, bulk_force, dic, gmredi, kpp, land, ocn_compon_interf,
62         ggl90, my82, opps, pp81, ptracers, sbo, seaice, shelfice, thsice)
63        this fix DIC_COST cumulative-time array (previously: bi,bj,k)
64      - fix 1rst call (nIter0) snap-shot output and accumulation (pkg/shelfice)
65      - fix missing accumulation for pkg/opps.
66      - cumulate fields only if doing time-ave output ({PKG}_taveFreq > 0)
67         (pkgs: ptracers, kpp, ocn_compon_interf, ggl90, my82, pp81);
68      - fix initialisation of time-ave vars and do only full time-step increment
69        (i.e.: no first & last "half time-step") (pkgs: ggl90, my82, opps, pp81);
70    o pkg/layers:
71      - use standard RW pkg S/R to write the output
72        and remove local write_fld version (which had a problem).
73      - use simple cumulative-time array (no level index) to fix time-ave S/R calls.
74      - fix LAYERS_CALC argument list.
75    o pkg/timeave:
76      - store cumulative-time in a simple tiled array (drop the level index)
77      - add new S/R (TIMEAVE_NORMALIZE) which uses simple cumulative-time array.
78    o pkg/ocn,aim_compon_interf
79      - changes for multi-threaded coupled run. (tested with ifort-11 on danton)
80    
81    checkpoint62  (2009/12/23)
82    o switch on useOBCSbalance in tutorial_plume_on_slope exp. and update output.
83        (was not previously tested in any other exp.)
84  o pkg/monitor:  o pkg/monitor:
85    - clean-up _RL/_RS version: add specific S/R for statistics with mask & volume:    - clean-up _RL/_RS version: add specific S/R for statistics with mask & volume:
86      mon_writestats_rl/s,F mon_calc_stats_rl/s.F ; will keep the old one      mon_writestats_rl/s,F mon_calc_stats_rl/s.F ; will keep the old one
87      (mon_printstats_rl/s,F mon_stats_rl/s.F) just for bare statistics.      (mon_printstats_rl/s,F mon_stats_rl/s.F) just for bare statistics.
88    - use hFac & 2-D mask (instead of 3-D mask + hFac in previous mon_stats_rl.F).    - use hFac & 2-D mask (instead of 3-D mask + hFac in previous mon_stats_rl.F).
89    - change del2 calculation.    - change del2 calculation.
# Line 14  o pkg/monitor: Line 91  o pkg/monitor:
91    - shorter monitor suffix for forcing stats ("forcing" instead of "extforcing").    - shorter monitor suffix for forcing stats ("forcing" instead of "extforcing").
92  o mask & obcs:  o mask & obcs:
93    - define 2-D "interior" masks (i.e., zero beyond OB) at 3 locations (C, W & S).    - define 2-D "interior" masks (i.e., zero beyond OB) at 3 locations (C, W & S).
94    - move global area computation from ini_masks_etc.F to ini_linear_phisurf.F    - move global area computation from ini_masks_etc.F to ini_linear_phisurf.F
95      (called after packages_init_fixed)      (called after packages_init_fixed)
96  o pkg/obcs:  o pkg/obcs:
97    - move bi,bj loops into obcs_calc, so obcs_prescribe_read is called only once.    - move bi,bj loops into obcs_calc, so obcs_prescribe_read is called only once.
# Line 28  o nonHydrostatic: Line 105  o nonHydrostatic:
105      (in prep. for new NH free surface form).      (in prep. for new NH free surface form).
106  o pkg/obcs:  o pkg/obcs:
107    add files & OB-variables for wVel (Non-Hydrostatic) with useOBCSprescribe    add files & OB-variables for wVel (Non-Hydrostatic) with useOBCSprescribe
108  o model/src:  o model/src:
109    fix 2-D solver initialisation for deep-atmosphere (p-coord) with topography    fix 2-D solver initialisation for deep-atmosphere (p-coord) with topography
110    
111  checkpoint61z (2009/12/01)  checkpoint61z (2009/12/01)
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