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Notes on tags used in MITgcmUV |
Notes on tags used in MITgcmUV |
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============================== |
============================== |
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o adjustment.cs-32x32x1: test "blank tiles" when compiling with mpi |
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o eesupp/src: new S/R to stop everyone when 1 (or more) Proc. find an error |
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o pkg/exch2: new S/R EXCH2_CHECK_DEPTHS to check that unconnected tile |
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edges are closed (zero depth); might happen with "blank tiles"; |
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for now, disable if using OBCS. |
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o tools/gemake2: delete modifs from March 27-29 2009 (with option "-mpi": |
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link *_mpi files from "MODS" dir) to return to a strait-forward behavior. |
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o move read_write.F to write_utils.F ; new parameter (maxLengthPrt1D) |
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to reduce length of 1.D array print in STDOUT. |
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o adjustment.cs-32x32x1: changed to oceanic test with 1 continent |
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+ use 48 tiles (16x8): this will allow to test "blank tiles". |
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o start to test MPI + multi-threaded (change testreport to skip tests |
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where number of tiles do not match). |
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o genmake2: add option "-omp" to turn on Open-MP ; |
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passed to testreport (if using -mth) ; merge few (*+mth) optfiles. |
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o pkg/exch2 (+ utils/exch2): ignore blank tiles (instead of removing them) |
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and keep the original tile numbering. Note: compatible with old |
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W2_EXCH2_TOPOLOGY.h & w2_e2setup.F topology files. |
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checkpoint61l |
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o Overlaps had been forgotten in calculating ijk keys : fixed |
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o fix cyrus makedepend for gcc 4.4 |
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o experiment fizhi-cs-aqualev20: |
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switching to new version of S/R GETPWHERE (#define TRY_NEW_GETPWHERE) |
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and generate new output. Note: new output is much closer to the old |
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one (v1.8) generated with pgf77 -O2 on Mar 14 2007 than it is from |
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the previous one (v1.9) generated with pgf77 -O0 on Jun 13 2007. |
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o pkg/fizhi: |
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- change to avoid indices going deliberately over array-bounds |
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- remove unnecessary MPI stuff |
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- perpetual spring equinox with "#define FIZHI_USE_FIXED_DAY" |
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- new version of S/R GETPWHERE available with #define TRY_NEW_GETPWHERE: |
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does not go over array-bounds and therefore returns reliable output. |
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- in fizhi_driver.F & fizhi_turb.F, fix "get_alarm" calls: |
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this S/R has 4 output arguments, which are used inside "get_alarm"; |
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when it is called with the same variable "ndum" in place of several |
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output arguments, this produces weird side effect inside "get_alarm" |
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(e.g., datein=dates(n) is overwritten by timein=times(n) since both |
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datein & timein, resp. 2nd and 3rd arg., are pointed to the same "ndum" |
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address) and produces error. |
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o tools/gemake2: (March 27-29 2009) |
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with option "-mpi": link *_mpi files from "MODS" dir (this is what |
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testreport does). |
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o lab_sea experiment: change from 2x1 tiles to 2x2 tiles and regenerate output |
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o pkg/seaice: fix bug in new version of S/R SEAICE_LSR.F: |
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update lab_sea.lsr & lab_sea.salt_plume results |
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o pkg/seaice: |
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Major overhaul of the LSOR solver: change discretization from original |
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finite differences to finite volume. The old routine is still in the |
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file seaice_lsr.F and can be turned on with the CPP-flag |
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SEAICE_OLD_AND_BAD_DISCRETIZATION |
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Along with this change, the discretization of the strain rates is changed. |
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The same flag turns on the old discretization in seaice_calc_strainrates.F |
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All verification experiments with seaice are affected (except for |
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seaice_exf_offline); global_ocean.cs32x15/input.icedyn recovers the old |
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results by setting the above flag. |
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Further changes involve changes in defaults: |
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- ALLOW_FLOODING is defined and turned on by default |
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- SEAICEadvSnow = .true. is now the default |
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- SEAICEadvSalt = .true. is now the default |
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- SEAICEadvAge = .true. is now the default |
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- SEAICE_clipVelocities = .false. is now the default |
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(as per J. Zhang's recommendation) |
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- B-grid, and thus not tested: SEAICE_TEST_ICE_STRESS_1/EXPLICIT_SSH_SLOPE |
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is defined, SEAICE_TEST_ICE_STRESS_1 is renamed into SEAICE_BICE_STRESS |
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- seaice_growth: replace computation of UG by a simple copy from wspeed |
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checkpoint61k |
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o pkg/seaice: a few bug fixes mostly concerning the metric terms: |
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seaice_lsr: fixed a few metric terms, |
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affects lab_sea.lsr, lab_sea.salt_plume, seaice_obcs |
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add more debugging diagnostics |
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seaice_evp: removed superfluous many metric terms of FV discretization |
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of stress divergence |
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affects lab_sea, lab_sea.hb87 |
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seaice_ocean_stress: removed superfluous many metric terms of FV discretization |
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of stress divergence for non-evp solver |
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(this part is not tested anywhere) |
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seaice_calc_strainrates: fixed a bug in no-slip boundary conditions, |
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they were effectively only half slip |
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affects lab_sea.hb87 |
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updated all relevant verification experiments (except lab_sea//output_adm.txt |
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which was left over, but fails at level 7 & 6) |
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checkpoint61j |
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o pkg/seaice: turn a few hard wired parameters into run time parameters |
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o pkg/seaice/exf/monitor: turn netcdf coordinate variable T into model |
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time in seconds as promised by the usints in seaice_monitor and exf_monitor |
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o pkg/mnc: fix the coordinate variables for multi-tile curvi-linear grids |
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that are not cubed-sphere grids |
| 97 |
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o pkg/seaice: fix a bug for the rare case of SEAICE_VECTORIZE_LSR |
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o pkg/ctrl: |
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fix bug in ctrl_depth_ini.F (EXCH_XYZ was applied to 2-D field xx_r_low) |
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o non-hydrostatic (calc_gw.F): |
| 101 |
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fix viscA4 on CS-grid + fix diagnostics: Wm_Diss & Wm_Advec |
| 102 |
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update output of exp. global_ocean.cs32x15.viscA4 |
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o remove backward compatibility for thetaMin,phiMin |
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(replaced by xgOrigin,ygOrigin on Jan 27, 2009) |
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o pkg/exf: fix a serious bug in exf_set_uv.F: do a rotation of the |
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interpolated wind field not only for curvilineargrid=.true., but also |
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for a rotated grid (rotateGrid=.true.) |
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o pkg/exf: add capability to bypass interpolation for runoff |
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by setting yet another CPP-flag |
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o eesupp/src, B-grid exchange: |
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add simple (6 tiles, non MPI) CS exch + standard interface S/R. |
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o autodiff |
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new CPP option ALLOW_TAMC_SINGLEPREC_COMLEV |
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allows to switch to single-prec common blocks; |
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corresponding switch occurs in tamc.h, integer isbyte |
| 116 |
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TAF store directivs "byte" and "kind" seem equivalent; |
| 117 |
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Most tamc.h have been updated correspondingly. |
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checkpoint61i |
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o autodiff: |
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fix autodiff_sore/_restore indices for obcs |
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(spotted by I. Hoteit, M. Mazloff) |
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o pkg/autodiff, pkg/ctrl: |
o pkg/autodiff, pkg/ctrl: |
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Add flag to reduce all tapelev I/O to single-prec. |
Add flag to reduce all tapelev I/O to single-prec. |
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In data.ctrl set |
In data.ctrl set |
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doSinglePrecTapelev = .TRUE. |
doSinglePrecTapelev = .TRUE. |
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o model/src/ini_curvilinear_grid.F: check in hack for SX8 compiler |
o model/src/ini_curvilinear_grid.F, new grid-file format without EXCH2: |
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to make sure that recip_dxV and recip_dyU are never zero, until we |
check in hack for SX8 compiler (for dxV, dyU); remove it afterwards. |
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have a proper exchange for them. Most compilers do not seem |
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to mind divisions by zero in the overlaps, as long as the results are |
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not used anywhere, but sxf90 does. |
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o pkg/shelfice: fix bug with SHELFICEconserve flag, prepare for |
o pkg/shelfice: fix bug with SHELFICEconserve flag, prepare for |
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real fresh water flux (not yet) |
real fresh water flux (not yet) |
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o pkg/mdsio & rw: |
o pkg/mdsio & rw: |
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- my82 (Mellor and Yamada, 1982) level 2 turbulence closure scheme |
- my82 (Mellor and Yamada, 1982) level 2 turbulence closure scheme |
| 2472 |
- these scheme operate in a similar manner as KPP (without ghat, of |
- these scheme operate in a similar manner as KPP (without ghat, of |
| 2473 |
course), however there is only one diffusivity that is used for both |
course), however there is only one diffusivity that is used for both |
| 2474 |
temperature and salinity (and passive tracers)ç |
temperature and salinity (and passive tracers) |
| 2475 |
o add offline package |
o add offline package |
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o add "verification/dic_example" which contains a dic-gchem-ptracer setup |
o add "verification/dic_example" which contains a dic-gchem-ptracer setup |
| 2477 |
provided by Stephanie Dutkiewicz |
provided by Stephanie Dutkiewicz |
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