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revision 1.2086 by mlosch, Tue Nov 4 16:20:59 2014 UTC revision 1.2087 by jmc, Tue Nov 4 18:24:46 2014 UTC
# Line 4  $Name$ Line 4  $Name$
4      Notes on tags used in MITgcmUV      Notes on tags used in MITgcmUV
5      ==============================      ==============================
6    
7  o pkg/seaice/seaice_preconditioner.F : fix cpp flags, so that code also  o pkg/dic: add modifications from Hajoon:
8    compiles when SEAICE_ALLOW_DYNAMICS is undefined    - add iron sedimentation flux function of the flux of PO4 out of bottom layer
9  o global_oce_llc90,cs32 : ecco_v4 verification exps now use separate    - light attenuation: add self-shading effect by climatological Chlorophyll
10    AUTODIFF_OPTIONS.h, CTRL_OPTIONS.h, ECCO_OPTIONS.h rather than      (read from file).
11    ECCO_CPPOPTIONS.h (i.e. replacing the deprecated, circumvoluted,  o pkg/seaice/seaice_preconditioner.F : fix cpp flags, so that code also
12    approach where CPP_OPTIONS.h includes an omnipotent      compiles when SEAICE_ALLOW_DYNAMICS is undefined
13    ECCO_CPPOPTIONS.h that superseeds pkgs '_OPTIONS.h').  o global_oce_llc90,cs32 : ecco_v4 verification exps now use separate
14  o pkg/ctrl/ctrl_map_ini_genarr.F : include GMREDI_OPTIONS.h where      AUTODIFF_OPTIONS.h, CTRL_OPTIONS.h, ECCO_OPTIONS.h rather than
15    ALLOW_3D_KAPGM, ALLOW_3D_KAPREDI (to be added later) belong.      ECCO_CPPOPTIONS.h (i.e. replacing the deprecated, circumvoluted,
16        approach where CPP_OPTIONS.h includes an omnipotent
17        ECCO_CPPOPTIONS.h that superseeds pkgs '_OPTIONS.h').
18    o pkg/ctrl/ctrl_map_ini_genarr.F : include GMREDI_OPTIONS.h where
19        ALLOW_3D_KAPGM, ALLOW_3D_KAPREDI (to be added later) belong.
20  o pkg/seaice/SEAICE_SIZE.h : replace ALLOW_AUTODIFF_TAMC with ALLOW_AUTODIFF  o pkg/seaice/SEAICE_SIZE.h : replace ALLOW_AUTODIFF_TAMC with ALLOW_AUTODIFF
21    to avoid needing AUTODIFF_OPTIONS.h anytime SEAICE_SIZE.h is included      to avoid needing AUTODIFF_OPTIONS.h anytime SEAICE_SIZE.h is included
22    (it seems that THSICE_SIZE.h, PTRACERS_SIZE.h have the same issue...)      (it seems that THSICE_SIZE.h, PTRACERS_SIZE.h have the same issue...)
23  o model/src, pkg/smooth, profiles, salt_plume, seaice, exf, ecco, ctrl :  o model/src, pkg/smooth, profiles, salt_plume, seaice, exf, ecco, ctrl :
24    add ECCO_OPTIONS.h, AUTODIFF_OPTIONS.h, CTRL_OPTIONS.h when needed    add ECCO_OPTIONS.h, AUTODIFF_OPTIONS.h, CTRL_OPTIONS.h when needed
25    - ECCO_OPTIONS.h is needed when including ecco_cost.h, ecco.h    - ECCO_OPTIONS.h is needed when including ecco_cost.h, ecco.h
26    - AUTODIFF_OPTIONS.h is needed when including tamc.h, tamc_keys.h    - AUTODIFF_OPTIONS.h is needed when including tamc.h, tamc_keys.h
27    - CTRL_OPTIONS.h is needed when including ctrl.h, optim.h, etc    - CTRL_OPTIONS.h is needed when including ctrl.h, optim.h, etc
28  o pkg/ctrl,ecco,exf :  o pkg/ctrl,ecco,exf :
29    - remove variables associated with NON-generic costs,    - remove variables associated with NON-generic costs,
30      unless ECCO_CTRL_DEPRECATED is defined.      unless ECCO_CTRL_DEPRECATED is defined.
31    - remove NON-generic NON-obcs controls,    - remove NON-generic NON-obcs controls,
32      unless ECCO_CTRL_DEPRECATED is defined.      unless ECCO_CTRL_DEPRECATED is defined.
33  o pkg/ctrl : added ctrl_local_params.h  o pkg/ctrl : added ctrl_local_params.h
34  o pkg/ecco : added ecco_local_params.h  o pkg/ecco : added ecco_local_params.h
35  o verification : added ECCO_CTRL_DEPRECATED to most as and oad  o verification : added ECCO_CTRL_DEPRECATED to most as and oad
36    experiments, which will progressively be removed once the      experiments, which will progressively be removed once the
37    experiments are revised to use only generic controls/costs.      experiments are revised to use only generic controls/costs.
38    
39  checkpoint65f (2014/10/13)  checkpoint65f (2014/10/13)
40  o pkg/ctrl, ecco, seaice : minor changes in headers  o pkg/ctrl, ecco, seaice : minor changes in headers
41  o global_oce_llc90,cs32 : ecco_v4 verification exps now test generic  o global_oce_llc90,cs32 : ecco_v4 verification exps now test generic
42    cost function and control capabilities added since checkpoint65c.      cost function and control capabilities added since checkpoint65c.
43  o pkg/ctrl: regroup all obcs ctrl variables in CTRL_OBCS.h.  o pkg/ctrl: regroup all obcs ctrl variables in CTRL_OBCS.h.
44  o pkg/ecco: increase modularity and improve logic  o pkg/ecco: increase modularity and improve logic
45    - ecco_toolbox.F (new) : basic operations that are often used,    - ecco_toolbox.F (new) : basic operations that are often used,
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