/[MITgcm]/MITgcm/doc/tag-index
ViewVC logotype

Annotation of /MITgcm/doc/tag-index

Parent Directory Parent Directory | Revision Log Revision Log | View Revision Graph Revision Graph


Revision 1.61 - (hide annotations) (download)
Fri Feb 15 21:31:57 2002 UTC (22 years, 2 months ago) by heimbach
Branch: MAIN
CVS Tags: chkpt44d_post, checkpoint44e_pre
Branch point for: release1_final
Changes since 1.60: +13 -1 lines
Creating chkpt44d_post
(I forgot to create chkpt44d_pre,
but chkpt44d_pre = chkpt44c_post).

1 heimbach 1.61 $Header: /u/gcmpack/MITgcm/doc/tag-index,v 1.60 2002/02/10 20:07:14 jmc Exp $
2 cnh 1.1
3     Notes on tags used in MITgcmUV
4     ==============================
5 jmc 1.60
6     o real fresh water flux implemented with non-linear free-surface.
7 heimbach 1.61
8     chkpt44d_pre,post
9     o added missing EXCLUDE_MONITOR flags
10     o changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi
11     (incompatible typ in MIN/MAX expressions caused problems
12     on IBM SP3)
13     o in genmake added variable MAKEDEPEND
14     plus resetting for case SunOS
15     o added timer_stats.c routine for IBM SP3
16     o removed variables in dynamics
17     !!! I forgot to create tag chkpt44d_pre !!!
18     !!! But chkpt44d_pre = chkpt44c_post !!!
19 heimbach 1.58
20 jmc 1.59 chkpt44c_pre,post
21     o few fix (mask in shap_s2, EmPmR in external_field_load,
22     USE_NATURAL_BCS in solve_for_P);
23     o add arguments myIter & myTime to S/R obcs_calc & solve_for_P
24    
25 heimbach 1.58 checkpoint44b_pre/_post
26     o merge of relevant stuff from the ecco-branch:
27     - genmake: removed $S64 overwrite for case SunOS
28     - pkg/exf: update and corrections for field swapping and obcs
29     - pkg/ecco: parameter lists for the_model_main, the_main_loop
30     harmonized between ECCO and MITgcm
31     - pkg/autodiff: added flow directives for obcs, mdsio_gl_slice
32     updated checkpointing_lev... lists for obcs
33     - model/src: minor changes in forward_step, plot_field
34     added directive for divided adjoint in the_main_loop
35     - pkg/mdsio: added mdsio_gl_slice
36 jmc 1.57
37     o check parameters & config (chkpt44a_pre,post)
38 jmc 1.56 o OBC and NonLin_FrSurf.
39    
40 heimbach 1.55 checkpoint44
41 jmc 1.54 o fix bug in mom_vi_del2uv
42 jmc 1.56 o select when filters are applied ; add options to zonal_filter (data.zonfilt)
43     o gmredi: fix Pb in the adiabatic form ; add options (.e.g. Bolus advection)
44     o update AIM experiments (NCEP input files)
45     o improve and extend diagnostics (Monitor, TimeAve with NonLin-FrSurf)
46 heimbach 1.55 o added some stuff for AD
47 adcroft 1.53
48     checkpoint43
49     o added two new advection tests
50     o added global 4x4 degree ocean test
51     o added test of H&S94 with free surface on cube
52     o some final mods for gradient check, adjoint,...
53 heimbach 1.52
54     checkpoint42
55     Fixed AD-related problems:
56     o Store directives up-to-date with re-arranged Adams-Bashforth
57     (mainly thermodynamics.F)
58     o New store directives for multi-dim. advection schemes
59     * new CPP flag ALLOW_MULTI_DIM_ADVECTION
60     * new common block and key passkey
61     (mainly gad_advection.F)
62     o Modified store directives for split of dynamics/thermodynamics
63     for the case ALLOW_KPP
64     o Cleaned argument list for timestep_tracer.F
65 adcroft 1.51
66     checkpoint41
67     o re-formatted/added comments in prologues of key subroutines
68     to work with protex
69 heimbach 1.47
70 adcroft 1.50 checkpoint40
71     o moved calc_gs, calc_gt and calc_tr1 back to model/src
72     o added FLT (floats) package from Arne along with demo. experiment
73     o re-arranged Adams-Bashforth scheme for tracers to allow easier
74     implementation of forward-in-time forcing terms
75     o more mods for non-linear free-surface including new variable
76     o modified multi-dim method to work on cube
77     o bug fix in KPP (from DM)
78    
79 adcroft 1.49 checkpoint40pre9
80     o added DST advection schemes
81     o fix MPI bug on SGI's
82     o modifications for non-linear free-surface
83     o fixed conditionals for fixed flow/passive tracer only mode
84     o added tension/strain form of stress tensor
85     o changes to commenting of arguments for TAF/TAMC
86     o added/updated many matlab scripts
87 adcroft 1.50 o added multi-dimensional advection method for tracers
88 adcroft 1.49
89 adcroft 1.48 checkpoint40pre8
90 heimbach 1.47 o new package rw/
91     Added method for dumping intermediate local arrays:
92     mdsio_writetile - same as mdsio_writefield except works from inside
93     bi,bj loop
94     mdsio_writelocal - same as mdsio_writetile except works for local
95     arrays
96     write_local_r? - higher-level wrapper for mdsio_writelocal
97     Controlled by diagFreq. Defaults to zero (ie. no dumps)
98     Example given at end of mom_vecinv.F that dumps some local arrays.
99     o replaced calc_mom_rhs.F by mom_fluxform.F/mom_vecinc.F to
100     control flux-form versus vector invariant code.
101     Switch is runtime flag vectorInvariantMomentum (defaults to false)
102     or genmake -DISABLE ...
103     o TAMC-related update to cope with mom_fluxform.F/mom_vecinc.F
104     (additional storing is now needed for case vecinv;
105     currently nothing implemented to switch this storing off
106     in case fluxform is used since no CPP flag available).
107 heimbach 1.46
108     checkpoint40pre7
109     o bug fix in dynamics.F
110     calc_viscosity called before k=1,Nr loop.
111     o added some #ifdef's ALLOW_PASSIVE_TRACER
112     o cleaned initialisations in ctrl_map_ini
113     related to TAF
114 heimbach 1.45
115     checkpoint40pre6
116     o split dynamics into thermodynamics & dynamics
117     o corresponding split of calc_diffusivity into
118     calc_diffusivity, calc_viscosity
119     (kpp_calc_diff, kpp_calc_visc).
120     o Added diffkr, kapgm to control variables
121     o bug fix in gmredi_slope_limit for ldd97
122 adcroft 1.44
123     checkpoint40pre5
124     o proper initialization of Adams-Bashforth time stepping
125     + uses forward step for very first step of model (iter=0)
126     o re-generated *all* output since almost all output is modified by this
127     change (sorry but we've been putting this one off for about 2 years)
128     + natl_box, aim.5l_Equatorial_Channel and aim.5l_zon-ave were
129     *not* regenerated since they are already out of date and I don't
130     want to create the impression that they are suddenly working.
131     o removed KAP stuff for DEC's
132     o modified/added many .cvsignore files in */code and */input
133     o added new expt "solid-body.cs-32x32x1"
134     + this uses an alternative form of ini_curvilinear_grid.F which
135     is not necessarily any better than the current one...
136 heimbach 1.43
137     checkpoint40pre4
138     o added re-initialisations of utrans,vtrans,rtrans in
139     calc_common_factors which are crucial for TAF.
140     o extended iMin,jMin range for calc_common_factors,
141     calc_diffusivity
142     o added option ALLOW_PASSIVE_TRACER
143     o a few minor updates and fixes
144    
145 heimbach 1.42 checkpoint40pre3
146     o created calc_gtr1.F for gad package
147     o split the_main_loop and re-introduced forward_step
148     o some recomputations of nIter0 for TAMC
149    
150 heimbach 1.41 checkpoint40pre2
151     o Updated to latest branch of AJA, JMC
152     o Added gradient check package
153     o Added routines for passive tracer handling
154     o Added carbon sequestration sensitivity experiment
155    
156 heimbach 1.39 checkpoint39
157     o Modifications and fixes to support TAMC
158     (mainly missing or wrong directives)
159     o Corrected common blocks when fooling TAMC to produce adjoint I/O
160     in addummy_in_stepping
161     o Updated verification/vero/ (bug fixes in code/, correct pickups in input/)
162     o Enabled "sliced" (xz-,yz-) exchanges, needed for obcs.
163     o Included following packages:
164     cal: calendar
165     exf: external forcing
166     ecco: essential routines to control use of cal, exf
167     (NB: this is not the full ECCO environment)
168 heimbach 1.40 o disabled some packages by default in genmake
169 heimbach 1.39
170 heimbach 1.38 checkpoint38
171     o see notes_c37_adj.txt
172     o corrected wrong layer index in external_forcing_t
173     o replaced the_main_loop/forward_step by the_main_loop
174     o removed forceoutput from write_state
175     (replaced criteria for initial/final state)
176     o added runtime flag for pre-C35 pickups: usePickupBeforeC35
177 jmc 1.36
178 jmc 1.37 checkpoint37
179     o mdsio.F routine split and packaged in pkg/mdsio
180     (mdsio.F and mdsio_gl.F still exist in eesupp/src but are not
181     used unless genmake -disable=mdsio)
182     o allow a more precise surface-geopotential gradient for the atmosphere
183     taking into account the change in space of Alpha (=1/rho) at the surface.
184     o variable "etaN" (replace cg2d_x) is the surface R-anomaly [r unit]
185     (ocean: sea surface height [m] / atmos: surface pressure anomaly [Pa])
186     o Change units: Phi_Hydrostatic (=phiHyd), Phi_Surface(=cg2d_x) and
187     Phi_NonHydrostatic (=cg3d_x), all have now the dimension of a potential
188     [m2/s2] (pressure/rhoConst in the ocean ; Geo-Potential in the atmosphere).
189     o Time-Average diagnostics defined as a pseudo package "timeave".
190     o pickup files : old pickup (before c35) did not work with new code (c35
191     and after) unless activating 2 commented lines in initialise-varia.
192     o Non-Hydrostatic pickup file Pb fixed.
193     o bug with Rigid-lid version (since c35) fixed.
194    
195 jmc 1.36 checkpoint36
196 jmc 1.37 o implement Crank-Nickelson barotropic time-stepping
197 jmc 1.36 o recover Time-Average diagnostics
198     o fix Pb in checkpoint (PR#19)
199     o AIM become a standard package ; clean unused CPP_kees
200 jmc 1.35
201     checkpoint35
202     o subtantial rewrite of dynamics.f
203     o allows staggered time-stepping
204     o packaged obcs, aim (Atmospheric Physics), zonal_filt, shap_filt
205     o added bottom drag (linear + quadratic)
206 heimbach 1.33
207     checkpoint34
208     o Modified exchange routines for correct reverse simulation.
209     o Added verification output to comply with bug fix in impldiff.F
210     as of c33 (exp2, natl_box).
211     o Corrected store directives in dynamics.F
212     o Corrected array boundaries in impldiff.F
213     o Corrected array dimensions in gmredi.
214     Added temporary scalars to avoid storage by TAMC (gmredi, kpp).
215 heimbach 1.34 o Added routine GLOBAL_SUM_INT to global_sum.F
216 heimbach 1.33 o Added mdsio_gl.F for ECCO purposes.
217 adcroft 1.32
218     checkpoint33
219     o Fixed bug in lower BC in impldiff.F
220     o Fixed confusion about units of forcing arrays in FFIELDS.h
221     namely Fu,Fv,Qnet,Qsw,EmPmR:
222     - Removed verification/natl_box/code/external_fields_scale.F
223     (did not differ from that in model/src)
224     - Changed units of fu,fv,Qnet,Qsw,EmPmR back to proper units
225     (see FFIELDS.h for description)
226     - Scale fu,fv,Qnet,Qsw,EmPmR when used in external_forcing_surf.F,
227     kpp_calc.F and kpp_transport_t.F
228     - Removed model/src/external_fields_scale.F and calls to it
229     - verification/natl_box uses flux data with "atmospheric" sign so
230     a special version of external_fields_load.F is used to
231     change the data as it's read in. This way, the arrays
232     have the right units and signs at all times tha a user could
233     possibly use them.
234     o Corrected genmake to delete a temporary file during configuration
235 heimbach 1.31
236     checkpoint32
237     o Scaling of forcing fields moved from external_forcing.F to
238     external_fields_scale.F, called directly after loading fields.
239     o Surface relaxation terms added to surface tendency fields in
240     extra subroutine.
241     o impldiff.F changed to avoid storing by TAMC of huge intermediate
242     fields.
243     o Changes in GMRedi to comply with packaging structure.
244     o Modifications and bug fixes in KPP package.
245     o Verification experiment for KPP added (verification/nat_box/)
246 heimbach 1.30
247     checkpoint31
248     o Packages interface brought in line with defined standard
249     -> new routines packages_...F
250     -> changes in initialise_fixed.F, initialise_varia.F
251     -> enables initialisation interface for ECCO package
252     o Rescaling of external forcing fields immediately after read
253     (removed from external_forcing.F)
254     -> new: surface_fields_scale.F
255     -> affects ini_foorcing.F, external_fields_load.F
256     o Computation of surface tendencies before tendency updates.
257     -> new: external_forcing_surf.F
258     o Change of variable names useGMRedi, useKPP, useECCO
259     o Further changes in dynamics.F, impldiff.F for TAMC
260     o Tested for experiments 0, 2, 4.
261     - not yet tested for GMRedi.
262     - not yet tested for KPP.
263 adcroft 1.29
264     checkpoint30
265     o Updates for OBCs
266     o New experiment for test OBCs (internal_wave)
267     o New output.txt in verification/exp4/results/
268     o Updates for KPP: calculation of viscosity corrected, new variables
269     kpp_dumpFreq and kpp_taveFreq
270     o CPP'd calls to system routines for TARGET_CRAY_VECTOR (P.H.)
271     and entry for T90 in genmake
272 adcroft 1.28
273     checkpoint29
274     o packaged KPP and GM/Redi
275 heimbach 1.27
276     checkpoint28
277     o Corrected initialization of hFacMin for difference vertical coordinates
278     o Modified calculation of partial cell thickness to more robust algorithm
279     o config_summary.F: replaced write_1D_... by write_0D_...
280     read_write.F: added subroutines write_0D_...
281     o routines calc_common_factors, calc_gs, calc_gt, calc_phi_hyd, find_rho:
282     included some initialisations required for TAMC.
283     o routine calc_isoslopes: modified sqrt computation to make it
284     differentiable for zero argument.
285     o routines dynamics, impldiff:
286     included store directives and tape key computations required for TAMC.
287     o ALL TAMC related changes are between ifdef ALLOW_AUTODIFF_TAMC
288 adcroft 1.26
289     checkpoint27
290     o fixed calc_isoslopes() to so that cancellation of terms in tensor
291     formulation works properly with variable resolution.
292     o restructured the calling tree between the_model_main() and dynamics()
293     o split initialise() into initialise_fixed() and initialise_varia()
294     o introduced initialization file pSurfInitFile for free surface (cg2d_x)
295     in new routine ini_psurf()
296 adcroft 1.25
297     checkpoint26
298     o moved some #ifdef in optional routines to encompass everything
299     except the argument declarations. This was using up some memory.
300     o fixed macros like _ADT to work with both versions of Linux cpp
301     o cleaned up some unused and uninitialized variables
302     (helps when debugging with strict compile options)
303     o split up CPP_EEOPTIONS.h into options and macros
304     (macros are now in eesupp/inc/CPP_EEMACROS.h)
305     o patch for 2 processor JAM mode
306 adcroft 1.24
307     checkpoint25
308     o updates for OBCs and NH
309     o dramatically reduced memory usage
310     o added "JAM" routines for use on Artic network
311     o parameterization of convection by implicit vertical diffusion
312     o added a diagnostic of convective index
313     o moved call to calc_divg_hat() from dynamics() to solve_for_pressure()
314     (this is was partly for OBCs and NH but also in anticipation of
315     an explicit free-surface option)
316     o initial state input files for U and V
317 adcroft 1.23
318     checkpoint24
319     o Removed some spurious "REAL"s
320     o Updated KPP to latest version from JPL
321     o Added a COS(latitude) in horizontal viscosity
322 adcroft 1.22
323     checkpoint23
324     o Added del^4 diffusion for salt and temperature
325     o Multiple minor fixes (implicit none's, arguments to global_sum, etc.)
326 adcroft 1.21
327     checkpoint22
328     o Made many small changes: implicit none, format(i5), etc...
329     o Introduced KPP mixing scheme (compiles and runs but *not* tested)
330 adcroft 1.20
331     checkpoint21
332     o Introduced new I/O package that supports direct-access records (mdsio.F)
333     o Split-up mid-level I/O routines
334     o Updated input data for experiments 0,1,2,4 and 5
335     o Finally removed the genmake.* scripts (everyone seems happy with genmake)
336 adcroft 1.18
337 adcroft 1.19 checkpoint20
338     o Tidied up open-boundaries some more
339     o Added non-hydrostatic code
340     o Fixed some input data
341     o Modified MPI start-up to work in "coupled" context.
342    
343 adcroft 1.18 checkpoint19
344     o Tidied up directory structure for verification experiments.
345     o Added new code for open boundaries.
346     o Corrected advective terms near boundaries.
347     o Added CPP flag for "old UV" geometry and corrected spherical geometry.
348     o Implemented free-slip/no-slip BCs and del^4 dissipation.
349 adcroft 1.19 o Split default parameters out of ini_parms.F into set_defaults.F.
350 cnh 1.17
351     checkpoint18
352     o Further changes for optional code generation with
353     CPP - ugh!
354 cnh 1.16
355     checkpoint17
356     o Beginning to incorporating modularity
357     for supporting atmos. and ocean configs.
358     o Small changes for TAMC complinace
359     o New ultra simple test case. Barotropic box
360     configuration "exp0".
361 cnh 1.15
362     checkpoint16
363     o Minor changes to exchange routines to support
364     accumulation in reverse mode. Adjoint of an
365     assignment is an addition.
366     o Changes to support compilation by TAMC (LR(1)
367     syntax) and by g77 under Linux ( 72 character
368     limit ).
369 cnh 1.14
370     checkpoint15
371     Rewrote exchange routines to allow
372     o General tile <-> tile connectivity.
373     o TAMC reverse mode flag ( is this really needed? )
374     o Variable width overlap and exchange region widths.
375     o Hooks for sharing data via DMA, Arctic, Memory Channel,
376     shmput/shmget, VIA, SYSV shmem and every other cool
377     communication method.
378 cnh 1.13
379     checkpoint14
380     Consistent isomorphism chages made. These allow dynamical core
381     to support both pressure and meters as a vertical coordinate.
382 cnh 1.12
383     checkpoint13
384     Release which corrects global_max problem and a couple
385     of KGM time-averaging diagnostic errors. Also contains
386     a double-gyre experiment setup as well as the baseline
387     4 degree global template. The double gyre template is
388     organised to allow it to be applied automatically to
389     the baseline configuration.
390 adcroft 1.11
391     branch-point-rdot
392     A few tidy-ups have been made bt the real point of this
393     check-point (excuse the pun) is to allow a branch to be
394     made for the purposes of adding the rDot alterations.
395     I don't want to commit the rDot to the main-trunk until
396     we've actually tested it...
397 cnh 1.10
398     checkpoint12
399     Tidy up and added generic genmake script (formerly
400     configure script).
401     Released to testers.
402 adcroft 1.9
403     checkpoint11
404     Re-arranged initialise() and introduced ini_vertical_grid()
405     and ini_masks_etc().
406 adcroft 1.8
407     checkpoint10
408     Introduced the configure script.
409     Separated out the diags package.
410     Added template for writing time-averages of tile/intermediate quantities.
411     Updated SIZE.h in exp2 and made the data big-endian.
412 adcroft 1.7
413     checkpoint9
414     MPI fix. Filename changes (meta/data). salbin*y stuff.
415     General tidy-up.
416     SST.bin SSS.bin added to verification/exp2
417 adcroft 1.6
418     checkpoint8
419     Inludes time-dependant forcing and time-averaging.
420     Works at 4x4 and 2.8125x2.8125 global
421    
422     checkpoint7-4degree-ref
423     Branch from checkpoint7. Released for application to
424     global modeling and general modeling - process studies, regional
425     model etc..
426     Configured for verification/exp2 - 4 degree global, two process.
427 cnh 1.5
428     checkpoint7
429     Created by cnh
430     Simple 4 degree global simulation
431     configuration.
432     Includes climatological wind,
433     hydrography, bathymetry etc
434     Does not include Heat Flux and E-P
435 cnh 1.4
436     checkpoint6
437     Created by cnh
438     merged checkpoint5 with CD and
439     spherical polar code.
440     Still some problems with GM Redi
441     abd full topography.
442 cnh 1.3
443     checkpoint5
444     Created by AJA
445     contains updates to GM Redi
446     and reordered timestepping loop
447     for Implicit Diffusion.
448 cnh 1.2
449     checkpoint4
450     Created by cnh
451     Contains memory saving macros ( _rdxc etc..) for when
452     grid variations are limited.
453     Contains polynomial coeffs for EOS and knudsen program
454     for generation.
455    
456 cnh 1.1 checkpoint3
457     Created by cnh
458     Added extra flags for runtime options
459     Added this file
460     Added implicit free-surface
461     Added pre-conditioner
462     Put compare01 into repository ( compare01/... )
463     Put data and eedata into repository ( verification/exp1 )
464    
465     checkpoint2
466     Created by AJA
467     Added GM/Redi
468    
469     checkpoint1
470     Created by AJA
471     Restructured kloop in dynamics.F
472     Added non-linear EOS
473    
474 cnh 1.2 baseline
475     Original checked in code
476 cnh 1.1

  ViewVC Help
Powered by ViewVC 1.1.22