1 |
heimbach |
1.53.4.49 |
$Header: /u/gcmpack/MITgcm/doc/tag-index,v 1.53.4.48 2003/06/23 23:55:36 heimbach Exp $ |
2 |
cnh |
1.1 |
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3 |
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Notes on tags used in MITgcmUV |
4 |
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============================== |
5 |
heimbach |
1.53.4.48 |
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6 |
heimbach |
1.53.4.49 |
ecco_c50_e33a |
7 |
heimbach |
1.53.4.48 |
o first step in c51 merge |
8 |
heimbach |
1.53.4.49 |
- redundant update in model/src/ |
9 |
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- merge back's in autodiff, ctrl, kpp, seaice |
10 |
dimitri |
1.53.4.43 |
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11 |
heimbach |
1.53.4.46 |
ecco_c50_e33 |
12 |
dimitri |
1.53.4.43 |
o minor changes to pkg/seaice pkg/cost/cost_ice.F |
13 |
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and verification/natl_box_adjoint/README |
14 |
heimbach |
1.53.4.44 |
o Modif's to enable tangent linear run in ECCO environment |
15 |
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including time-dependent forcing |
16 |
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* main problem is missing call mdsreadfield out of exf_set_gen |
17 |
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(i.e. computation of trajectory in TLM mode) |
18 |
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* incorrect g_active_write_... |
19 |
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* (re-) init of bar files and g_bar files |
20 |
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o Reverted back to 3-dim. tbar, sbar for SST, SSS bar files. |
21 |
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o MERGES: |
22 |
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* obcs/ ctrl/ G. Gebbie code |
23 |
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(major changes in ctrl handling, volume flux balancing etc.) |
24 |
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* cost/ ctrl/ A. Koehl code |
25 |
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- new cost contributions (new data types) |
26 |
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- efficient pack/unpack for time-dependent 2-d fields |
27 |
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o replaced mutiple ctrl_get... by single generic ctrl_get_gen.F |
28 |
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(except obcs) |
29 |
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o somewhat cleaned package initialisation sequence for |
30 |
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ctrl/ cost/ ecco/ |
31 |
heimbach |
1.53.4.45 |
o extended grdchk to enable obcs gradient checks |
32 |
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o some generalizations for easier TLM <-> ADM switches |
33 |
heimbach |
1.53.4.46 |
o added configuration example for parallel divided adjoint |
34 |
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(see verification/natl_box_adjoint/code_diva_mpi/README ) |
35 |
heimbach |
1.53.4.47 |
o started verification exp. for obcs control |
36 |
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(still needs checking) |
37 |
dimitri |
1.53.4.39 |
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38 |
heimbach |
1.53.4.42 |
ecco_c50_e32 |
39 |
dimitri |
1.53.4.40 |
o Patrick's adjoint-model storage directives for pkg/seaice |
40 |
dimitri |
1.53.4.39 |
o merged with checkpoint50g_post (pkg/seaice and verification/lab_sea) |
41 |
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- added SEAICE_MULTILEVEL for 8-category sea-ice thermodynamics |
42 |
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- LSR sea-ice dynamic solver moved to SouthWest B-grid location and |
43 |
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made the default because of faster convergence than ADI |
44 |
heimbach |
1.53.4.41 |
o Modifications for adjoint of SEAICE_ALLOW_DYNAMICS |
45 |
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- extended state in checkpoint_lev... |
46 |
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- in lsr.F, replaced GO TO by fixed loop index (also avoid DO WHILE) |
47 |
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- YEAH: in lsr.F, (first) successful use of CADJ LOOP = ITERATION |
48 |
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- avoid stoing in S/R budget for now |
49 |
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- in dynsolver.F, avoid NPSEUDO loop for adjoint |
50 |
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- new comlev1_lsr in the_main_loop |
51 |
heimbach |
1.53.4.42 |
o Small modif's in lsopt/, optim/ to ease compilation |
52 |
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New script to run optim (lsopt) |
53 |
heimbach |
1.53.4.38 |
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54 |
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ecco_c50_e31 |
55 |
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o exf totally restructured |
56 |
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- replaced all exf_set_ routines by one generic exf_set_gen.F |
57 |
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and made sure it's still differentiable |
58 |
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- split exf_getffields.F into new exf_bulkformulae.F |
59 |
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- exf_inscal_/exf_outscal_ suffixes consistent with field names |
60 |
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o New cost function: Tini-Tfin to do model spinup optimization. |
61 |
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o Started new verification exp for Tini-Tfin optimization. |
62 |
heimbach |
1.53.4.35 |
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63 |
dimitri |
1.53.4.37 |
ecco_c50_e30 |
64 |
heimbach |
1.53.4.35 |
o corrected CPP option mismatch in exf_Bulk... functions for case |
65 |
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#define ALLOW_ATM_WIND && #undef ALLOW_ATM_TEMP |
66 |
dimitri |
1.53.4.36 |
o Merging from release1_p13 and from icebear5 |
67 |
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- bug fix for pkg/seaice dynamic solver |
68 |
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- Added SEAICE_initialHEFF to pkg/seaice |
69 |
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- Additional options for pkg/cost/cost_ice.F |
70 |
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- Updates to verification/natl_box_adjoint |
71 |
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- pkg/ctrl/ctrl_init.F |
72 |
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Fix for determination of startrec and endrec. |
73 |
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- pkg/cal/cal_toseconds.F |
74 |
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Fix for negative intervals shorter than 1 day. |
75 |
heimbach |
1.53.4.34 |
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76 |
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ecco_c50_e29 |
77 |
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Bug fix for merging between c50 and KPP. |
78 |
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ikey was passed from thermodynamics to kpp_calc via |
79 |
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common block rather than being recomputed in kpp_calc, |
80 |
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in contradiction with new key itdkey. |
81 |
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New key ikppkey created, and tamc.h headers updated. |
82 |
heimbach |
1.53.4.33 |
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83 |
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ecco_c50_e28 |
84 |
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o major merge: |
85 |
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ecco-branch merged with checkpoint50 |
86 |
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gmredi now available, grdchk, DIVA up-to-date for MPI |
87 |
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However, two outstanding problems: |
88 |
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- kpp adjoint is broken, needs fixing! |
89 |
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- a few minor modif's in handling of CPP option |
90 |
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ALLOW_TANGENTLINEAR_RUN in conjunction with |
91 |
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ALLOW_ECCO_OPTIMIZATION are necessary to enable |
92 |
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TLM runs with ECCO setup |
93 |
heimbach |
1.53.4.30 |
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94 |
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ecco_c44_e27 |
95 |
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o exf: |
96 |
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- Enable initialisation of forcing fields to constant |
97 |
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(runtime) values. |
98 |
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- in exf_getffields.F |
99 |
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Reduce i-/j-loop to interior domain, discarding overlaps. |
100 |
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That also fixes wrong TAF-key computations for key_1, key_2 |
101 |
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with bulf formulae. |
102 |
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- exf_init.F modify #ifdef for exf_init_evap |
103 |
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- exf_getffieldrec.F, ctrl_getrec.F |
104 |
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The following INT-usages are not safe: |
105 |
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fldsecs = int(fldsecs/fldperiod)*fldperiod |
106 |
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fldcount = int(fldsecs/fldperiod) + 1 |
107 |
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and were modified. |
108 |
heimbach |
1.53.4.32 |
- added repeatPeriod (from MAIN branch) |
109 |
heimbach |
1.53.4.30 |
o grdchk: updated and merged |
110 |
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- has both ADM and TLM checks |
111 |
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- works for single- and multi-proc. |
112 |
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- output cleaned |
113 |
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- worked successfully for parallel DIVA |
114 |
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Needed one update in EEPARAMS.h and updates in ctrl package |
115 |
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More modif's may be necessary for ECCO code to support TLM. |
116 |
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o autodiff: checkpoint_lev... |
117 |
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- updated storing for bulk formulae (some arrays were missing) |
118 |
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- added state for seaice package |
119 |
heimbach |
1.53.4.31 |
- synchronized with main branch |
120 |
heimbach |
1.53.4.30 |
o DIVA: |
121 |
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Modif.s in |
122 |
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- cost_init.F |
123 |
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- cost_averagesfields.F |
124 |
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- ecco_the_main_loop.F |
125 |
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- ecco_the_model_main.F |
126 |
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and added cost_final_restore.F cost_final_store.F |
127 |
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o With these changes, it is possible to fully separate |
128 |
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the first forward run to compute the cost function (mdthe_main_loop) |
129 |
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and adjoint runs over individual DIVA intervals (adthe_main_loop) |
130 |
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into separate model executions. |
131 |
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This enables better tuning of DIVA to given queue sizes. |
132 |
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o Loss of cost function value in consecutive DIVA runs is |
133 |
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fixed by storing to 'costfinal' file. |
134 |
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o Appropriate call of ctrl_unpack/_pack,grdchk_main at |
135 |
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beginning/end of adjoint integration is accounted for. |
136 |
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The current changes apply to TAF-1.4.26. |
137 |
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TAF has one remaining bug, requiring one manual change |
138 |
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(see MITgcm manual). |
139 |
heimbach |
1.53.4.31 |
o bug fix plus modif for ubar, vbar in cost_averagesfields |
140 |
heimbach |
1.53.4.32 |
o cal: synchronized between MAIN and ecco-branch |
141 |
dimitri |
1.53.4.25 |
|
142 |
dimitri |
1.53.4.28 |
icebear4 |
143 |
dimitri |
1.53.4.25 |
o Added cost_ice for sea-ice volume sensitivity experiment. |
144 |
dimitri |
1.53.4.26 |
o ecco_the_model_main.F: SEAICE_WRITE_PICKUP must precede WRITE_CHECKPOINT |
145 |
dimitri |
1.53.4.27 |
o Reduced derivative singularities in pkg/seaice. |
146 |
dimitri |
1.53.4.29 |
o Updated verification/natl_box_adjoint |
147 |
dimitri |
1.53.4.22 |
|
148 |
dimitri |
1.53.4.24 |
icebear3 |
149 |
dimitri |
1.53.4.22 |
o Removed spurious iikey and idkey |
150 |
dimitri |
1.53.4.23 |
o pkg/exf |
151 |
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- bug fix in treatment of downward radiation |
152 |
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o pkg/seaice |
153 |
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- added initial sea-ice thickness parameter SEAICE_initialHEFF |
154 |
dimitri |
1.53.4.24 |
o updated verification/natl_box_adjoint |
155 |
dimitri |
1.53.4.18 |
|
156 |
dimitri |
1.53.4.21 |
icebear2 |
157 |
dimitri |
1.53.4.19 |
o Added missing /* */ to CPP comments in pkg/seaice, pkg/exf, |
158 |
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kpp_transport_t.F,and ecco_the_main_loop.F |
159 |
dimitri |
1.53.4.18 |
o adjoint-friendly modifications to pkg/seaice |
160 |
dimitri |
1.53.4.20 |
o added verification/lab_sea as per release1_p12_pre |
161 |
dimitri |
1.53.4.16 |
|
162 |
heimbach |
1.53.4.17 |
ecco_c44_e26 |
163 |
dimitri |
1.53.4.16 |
o Merging pkg/exf and pkg/seaice from cvs tag ecco_ice2 |
164 |
heimbach |
1.53.4.17 |
o exf: Modifications to correctly handle evap field for adjoint |
165 |
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o grdchk: |
166 |
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Added code to perform gradient checks for bulk formulae/atmos. state |
167 |
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(atemp, aqh, uwind, vwind). |
168 |
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NOTE: |
169 |
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This package is out of synch with c48 package. |
170 |
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The latter also has the tangent linear gradient checks. |
171 |
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Need to be merged. |
172 |
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o verification/natl_box_adjoint: |
173 |
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* added new setup: code_bulk/, input_bulk, results_bulk |
174 |
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(Experiment 2, described in README) |
175 |
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uses bulk formulae and atmos. state as control instead of |
176 |
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air-sea fluxes. |
177 |
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Performs gradient checks for first 4 elements of atemp control. |
178 |
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* changed standard verification to perform |
179 |
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gradient checks on first 4 elements on hflux control. |
180 |
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* gmredi switched off (will come after merge with c48). |
181 |
heimbach |
1.53.4.15 |
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182 |
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ecco_c44_e25 |
183 |
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o Merging some GM changes from main trunk (c47) to ecco-branch. |
184 |
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o Updating verif. natl_box_adjoint with GMRedi. |
185 |
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o Adding setup with explicit differentiaton of pressure solver. |
186 |
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o Bug fix: missing OBCS_OPTIONS.h for sponge layer code. |
187 |
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o (Re-?) Commiting old bug fixes in kpp to ecco-branch |
188 |
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(kpp_calc.F, kpp_routines.F) |
189 |
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o exf: |
190 |
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updated external forcing package |
191 |
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- cleaned old exfa stuff |
192 |
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- bug fixes |
193 |
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(missing OBCS_OPTIONS.h in two routines) |
194 |
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- enable easy to use "no forcing". |
195 |
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- added exf I/O for atmospheric loading |
196 |
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- added exf I/O for runoff data |
197 |
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- transfered scaling between exf <-> MITgcm to exf namelist |
198 |
heimbach |
1.53.4.14 |
|
199 |
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ecco_c44_e24 |
200 |
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o modifications to gradient check package (Martin Losch) |
201 |
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- enable centered differences |
202 |
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- modified format of standard output |
203 |
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o bug fix for nwettile contents |
204 |
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so far assumed global sum in first entry (1,1,k), |
205 |
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needed for global control vector |
206 |
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-> introduced new variable nwet[c/w/s]global(nr) |
207 |
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o shifts of calls to cal/exf package to be accessible |
208 |
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in MITgcm stand-alone |
209 |
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o shifted packages_init_variables before convective_adjustment_ini |
210 |
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(corresponding update of TAF tape initialisation). |
211 |
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o removed auxiliary field in impldiff |
212 |
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(caused numerical differences for GMRedi cases) |
213 |
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o updated obcs control part (G. Gebbie) |
214 |
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o removed some f90 comments ("!") |
215 |
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o Bug fixes and updates in cost package |
216 |
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* cost_final: correct multiplier mult_tauv, mult_sflux |
217 |
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* cost_hyd: added call cost_ssh |
218 |
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* cost_init_barfiles.F: replaced arrays by tmpfld's |
219 |
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* cost_readtopexmean.F: ersmask -> tpmeanmask |
220 |
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* cost_weights.F: corrected wtheta[2], wsalt[2] |
221 |
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o cleaned exchanges in cg2d.F |
222 |
heimbach |
1.53.4.13 |
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223 |
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ecco_c44_e23 |
224 |
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merged patches between release1_p1 and release1_p2: |
225 |
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o fixed array boundary problem for adjoint |
226 |
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(related to partial recomputation within subroutine |
227 |
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related to dynamics -> calc_viscosity -> mom_... |
228 |
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o fixed recomputation in thermodynamics |
229 |
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o prepare (but not complete) recomputation problem in impldiff |
230 |
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o fixed problem for adjoint of global_max |
231 |
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o switched off sponge layer code in external_forcing |
232 |
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Bug fix in ctrl_mask_set_yz (spotted by G. Gebbie) |
233 |
heimbach |
1.53.4.12 |
|
234 |
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ecco_c44_e22 |
235 |
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o Finally, the merges with the Scripps cost function terms: |
236 |
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Various additions, modifications, quality checks. |
237 |
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o Plus: Included switch ALLOW_AUTODIFF_MONITOR to handle |
238 |
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monitoring of adjoint state. |
239 |
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o Plus: removed comm_stats, ini_communication_patterns from diff. list |
240 |
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(no more need to "keep" MPI headers for adjoint generation) |
241 |
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o Plus: exf changes: |
242 |
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o added run-off routine |
243 |
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o additional storing needed for ustress,vstess |
244 |
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because of state-dependent quality check |
245 |
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o added missing initialisations |
246 |
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o Plus: genmake with MAKEDEPEND variable was still missing in ecco-branch |
247 |
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NB: - verification/natl_box_adjoint/ 240 steps run |
248 |
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* looks ok under Linux (twain.lcs.mit.edu) |
249 |
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* looks ok on MIT SUN's (fjord.mit.edu) |
250 |
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* NaN in reverse mode on Scripps SUN's at iter=214 |
251 |
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* NaN in reverse mode on IBM SP3 (BlueHorizon) at iter=204 |
252 |
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- 1 year forward int. global 2x2 deg. produces similar cost functions |
253 |
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* all cost terms of new code are slightly smaller (0.5 to 3%). |
254 |
heimbach |
1.53.4.11 |
|
255 |
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ecco_c44_e21 |
256 |
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o reversed order of ctrl/cost initialisation |
257 |
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o gmredi_slope_psi.F: Inconsistent types in MIN/MAX expressions |
258 |
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o modified to enable ctrl field swapping |
259 |
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o bug fix for global sum of ncvarlength in ctrl_init |
260 |
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o no more call to ctrl_unpack from ctrl_init |
261 |
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o no more write of ctrl vector in ctrl_pack |
262 |
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however, init. of control vector from ctrl_unpack |
263 |
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o various bug fixes & consistent nobcs handling in |
264 |
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ctrl_pack/unpack routines (by G. Gebbie) |
265 |
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o optim package: Added obcs control part for lsopt I/O |
266 |
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(by G. Gebbie) |
267 |
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o missing call to obcs_diags |
268 |
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o moved calls in packages_init_fixed to packages_readparms |
269 |
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because some quantities are needed earlier. |
270 |
heimbach |
1.53.4.10 |
|
271 |
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ecco_c44_e20 |
272 |
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o before major merges from the Scripps setup |
273 |
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here are two small updates: |
274 |
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- field swapping for surface flux controls enabled |
275 |
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(remains t.b.d. for atmos. state plus obcs) |
276 |
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- bug fix in active_file.F for xz-/yz- routines |
277 |
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- added missing xz-/yz- routines to active_file_ad.F |
278 |
heimbach |
1.53.4.8 |
|
279 |
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ecco_c44_e19 |
280 |
heimbach |
1.53.4.9 |
o merged necessary patches: |
281 |
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- AD-related changes for GMRedi |
282 |
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- fixes i KPP (delZ -> drF) |
283 |
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- hook to OBCS songe layer code in external_forcing |
284 |
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- errorMessageUnit non-zero in eeboot.F |
285 |
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- included GMREDI, EXACT_CONSERV to natl_box_adjoint verif. |
286 |
heimbach |
1.53.4.8 |
|
287 |
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ecco_c44_e18 |
288 |
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o sponge layer code for obcs was missing |
289 |
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- added hook in external_forcing.F |
290 |
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- added storing for TAF |
291 |
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o new routine cost_init_barfiles to initialise |
292 |
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adjoint fields adtbar, adsbar, adpsbar |
293 |
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(needed in conjunction with corrected ladinit for active I/O) |
294 |
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o cleaned up and corrected order in packages_readparms, ecco_readparms |
295 |
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o corrected and simplified weights for obcs controls |
296 |
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- weight fields simplified |
297 |
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- bug fix in ctrl_pack |
298 |
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- no more write of control vector in ctrl_pack |
299 |
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o i/j index bug fixes in cost_ssh_mean |
300 |
heimbach |
1.53.4.7 |
|
301 |
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ecco_c44_e17 |
302 |
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o bug fixes in cost package |
303 |
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* wrong identifier for active I/O of monthly mean psbar |
304 |
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(cost_averagesfields, cost_ssh) xx_psbar_dummy |
305 |
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* cleaned all identifier for active I/O of monthly fields |
306 |
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* wrong ladinit in various cost routines |
307 |
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o merge with interval (chkpt44c_post - chkpt44d_post) |
308 |
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* added missing EXCLUDE_MONITOR flags |
309 |
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* changed "e" to "_d" in gmredi_slope_limit, gmredi_slope_psi |
310 |
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(incompatible typ in MIN/MAX expressions caused problems |
311 |
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on IBM SP3) |
312 |
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* in genmake added variable MAKEDEPEND |
313 |
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plus resetting for case SunOS |
314 |
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added timer_stats.c routine for IBM SP3 |
315 |
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* removed variables in dynamics |
316 |
heimbach |
1.53.4.6 |
|
317 |
|
|
ecco_c44_e16 |
318 |
|
|
o new ECCO checkpoint, the first since ecco_c43_e15 |
319 |
|
|
which is branched from MITgcm. |
320 |
|
|
All changes were merged in between (see ecco-branch-mod? tags). |
321 |
|
|
o last changes: |
322 |
|
|
* assuming path for TAF and TAMC are known (e.g. in $path) |
323 |
|
|
* genmake: |
324 |
|
|
- added tools/xmakedepend to circumvene shortcoming of |
325 |
|
|
SUN's makedepend (size too small) |
326 |
|
|
- invoking ../tools/xmakedepend instead of makedepend |
327 |
|
|
- changed compiler flags for case SunOS |
328 |
heimbach |
1.53.4.5 |
|
329 |
|
|
ecco-branch-mod5 |
330 |
|
|
o mod's to reproduce open boundary run |
331 |
|
|
o enable field swapping for OB's and climatology |
332 |
|
|
o update store directives for OB control |
333 |
|
|
o added option ALLOW_OBCS_PRESCRIBE |
334 |
|
|
o call of getobcs now out of obcs_calc (param. list modified) |
335 |
heimbach |
1.53.4.4 |
|
336 |
|
|
ecco-branch-mod4 |
337 |
|
|
o this is the second part of changes necessary to reconcile |
338 |
|
|
the natl_box_adjoint verification (with and without grdchk). |
339 |
|
|
>>>!!! CHANGES BETWEEN THE TAGS ecco-branch-mod3 !!!<<< |
340 |
|
|
>>>!!! AND ecco-branch-mod4 !!!<<< |
341 |
|
|
>>>!!! SHOULD BE MERGED INTO THE MAIN TRUNK !!!<<< |
342 |
|
|
- genmake: removed $S64 overwrite for case SunOS |
343 |
|
|
- pkg/exf: update and corrections for field swapping and obcs |
344 |
|
|
- pkg/ecco: parameter lists for the_model_main, the_main_loop |
345 |
|
|
harmonized between ECCO and MITgcm |
346 |
|
|
- pkg/autodiff: added flow directives for obcs, mdsio_gl_slice |
347 |
|
|
updated checkpointing_lev... lists for obcs |
348 |
|
|
- model/src: minor changes in forward_step, plot_field |
349 |
|
|
- pkg/mdsio: added mdsio_gl_slice |
350 |
heimbach |
1.53.4.3 |
|
351 |
|
|
ecco-branch-mod3 |
352 |
|
|
o this is the first part of changes necessary to reconcile |
353 |
|
|
natl_box_adjoint verification (with and without grdchk). |
354 |
|
|
This set of changes is relevant for ECCO only. |
355 |
|
|
The next set/tag of changes (ecco-branch-mod4) |
356 |
|
|
should be merged into the main trunk. |
357 |
|
|
- update some options |
358 |
|
|
- parameter lists of ecco_the_model_main and ecco_the_main_loop |
359 |
|
|
differed from those of the MITgcm counterparts. |
360 |
heimbach |
1.53.4.2 |
|
361 |
|
|
ecco-branch-mod2 |
362 |
|
|
o update ecco-branch-mod1 to checkpoint44 |
363 |
|
|
o exclude from updates: |
364 |
|
|
- verification/ |
365 |
|
|
- adjoint/ |
366 |
|
|
- pkg/cost |
367 |
|
|
- pkg/ctrl |
368 |
|
|
- pkg/ecco |
369 |
|
|
- pkg/obcs |
370 |
|
|
- model/src/the_model_main.F |
371 |
|
|
- model/src/the_main_loop.F |
372 |
|
|
|
373 |
|
|
checkpoint44 |
374 |
|
|
o apply Shapiro filter on T&S before calc_PhiHyd (stagger time stepping) |
375 |
|
|
o fix bug in mom_vi_del2uv |
376 |
|
|
o added some stuff for AD |
377 |
heimbach |
1.53.4.1 |
|
378 |
|
|
ecco-branch-mod1 |
379 |
|
|
o based on c43 |
380 |
|
|
o replaced packages cost, ctrl, ecco, obcs |
381 |
|
|
o removed MITgcm verif.'s, added ECCO verif.'s |
382 |
|
|
o added lsopt, optim for line search optimization. |
383 |
adcroft |
1.53 |
|
384 |
|
|
checkpoint43 |
385 |
|
|
o added two new advection tests |
386 |
|
|
o added global 4x4 degree ocean test |
387 |
|
|
o added test of H&S94 with free surface on cube |
388 |
|
|
o some final mods for gradient check, adjoint,... |
389 |
heimbach |
1.52 |
|
390 |
|
|
checkpoint42 |
391 |
|
|
Fixed AD-related problems: |
392 |
|
|
o Store directives up-to-date with re-arranged Adams-Bashforth |
393 |
|
|
(mainly thermodynamics.F) |
394 |
|
|
o New store directives for multi-dim. advection schemes |
395 |
|
|
* new CPP flag ALLOW_MULTI_DIM_ADVECTION |
396 |
|
|
* new common block and key passkey |
397 |
|
|
(mainly gad_advection.F) |
398 |
|
|
o Modified store directives for split of dynamics/thermodynamics |
399 |
|
|
for the case ALLOW_KPP |
400 |
|
|
o Cleaned argument list for timestep_tracer.F |
401 |
adcroft |
1.51 |
|
402 |
|
|
checkpoint41 |
403 |
|
|
o re-formatted/added comments in prologues of key subroutines |
404 |
|
|
to work with protex |
405 |
heimbach |
1.47 |
|
406 |
adcroft |
1.50 |
checkpoint40 |
407 |
|
|
o moved calc_gs, calc_gt and calc_tr1 back to model/src |
408 |
|
|
o added FLT (floats) package from Arne along with demo. experiment |
409 |
|
|
o re-arranged Adams-Bashforth scheme for tracers to allow easier |
410 |
|
|
implementation of forward-in-time forcing terms |
411 |
|
|
o more mods for non-linear free-surface including new variable |
412 |
|
|
o modified multi-dim method to work on cube |
413 |
|
|
o bug fix in KPP (from DM) |
414 |
|
|
|
415 |
adcroft |
1.49 |
checkpoint40pre9 |
416 |
|
|
o added DST advection schemes |
417 |
|
|
o fix MPI bug on SGI's |
418 |
|
|
o modifications for non-linear free-surface |
419 |
|
|
o fixed conditionals for fixed flow/passive tracer only mode |
420 |
|
|
o added tension/strain form of stress tensor |
421 |
|
|
o changes to commenting of arguments for TAF/TAMC |
422 |
|
|
o added/updated many matlab scripts |
423 |
adcroft |
1.50 |
o added multi-dimensional advection method for tracers |
424 |
adcroft |
1.49 |
|
425 |
adcroft |
1.48 |
checkpoint40pre8 |
426 |
heimbach |
1.47 |
o new package rw/ |
427 |
|
|
Added method for dumping intermediate local arrays: |
428 |
|
|
mdsio_writetile - same as mdsio_writefield except works from inside |
429 |
|
|
bi,bj loop |
430 |
|
|
mdsio_writelocal - same as mdsio_writetile except works for local |
431 |
|
|
arrays |
432 |
|
|
write_local_r? - higher-level wrapper for mdsio_writelocal |
433 |
|
|
Controlled by diagFreq. Defaults to zero (ie. no dumps) |
434 |
|
|
Example given at end of mom_vecinv.F that dumps some local arrays. |
435 |
|
|
o replaced calc_mom_rhs.F by mom_fluxform.F/mom_vecinc.F to |
436 |
|
|
control flux-form versus vector invariant code. |
437 |
|
|
Switch is runtime flag vectorInvariantMomentum (defaults to false) |
438 |
|
|
or genmake -DISABLE ... |
439 |
|
|
o TAMC-related update to cope with mom_fluxform.F/mom_vecinc.F |
440 |
|
|
(additional storing is now needed for case vecinv; |
441 |
|
|
currently nothing implemented to switch this storing off |
442 |
|
|
in case fluxform is used since no CPP flag available). |
443 |
heimbach |
1.46 |
|
444 |
|
|
checkpoint40pre7 |
445 |
|
|
o bug fix in dynamics.F |
446 |
|
|
calc_viscosity called before k=1,Nr loop. |
447 |
|
|
o added some #ifdef's ALLOW_PASSIVE_TRACER |
448 |
|
|
o cleaned initialisations in ctrl_map_ini |
449 |
|
|
related to TAF |
450 |
heimbach |
1.45 |
|
451 |
|
|
checkpoint40pre6 |
452 |
|
|
o split dynamics into thermodynamics & dynamics |
453 |
|
|
o corresponding split of calc_diffusivity into |
454 |
|
|
calc_diffusivity, calc_viscosity |
455 |
|
|
(kpp_calc_diff, kpp_calc_visc). |
456 |
|
|
o Added diffkr, kapgm to control variables |
457 |
|
|
o bug fix in gmredi_slope_limit for ldd97 |
458 |
adcroft |
1.44 |
|
459 |
|
|
checkpoint40pre5 |
460 |
|
|
o proper initialization of Adams-Bashforth time stepping |
461 |
|
|
+ uses forward step for very first step of model (iter=0) |
462 |
|
|
o re-generated *all* output since almost all output is modified by this |
463 |
|
|
change (sorry but we've been putting this one off for about 2 years) |
464 |
|
|
+ natl_box, aim.5l_Equatorial_Channel and aim.5l_zon-ave were |
465 |
|
|
*not* regenerated since they are already out of date and I don't |
466 |
|
|
want to create the impression that they are suddenly working. |
467 |
|
|
o removed KAP stuff for DEC's |
468 |
|
|
o modified/added many .cvsignore files in */code and */input |
469 |
|
|
o added new expt "solid-body.cs-32x32x1" |
470 |
|
|
+ this uses an alternative form of ini_curvilinear_grid.F which |
471 |
|
|
is not necessarily any better than the current one... |
472 |
heimbach |
1.43 |
|
473 |
|
|
checkpoint40pre4 |
474 |
|
|
o added re-initialisations of utrans,vtrans,rtrans in |
475 |
|
|
calc_common_factors which are crucial for TAF. |
476 |
|
|
o extended iMin,jMin range for calc_common_factors, |
477 |
|
|
calc_diffusivity |
478 |
|
|
o added option ALLOW_PASSIVE_TRACER |
479 |
|
|
o a few minor updates and fixes |
480 |
|
|
|
481 |
heimbach |
1.42 |
checkpoint40pre3 |
482 |
|
|
o created calc_gtr1.F for gad package |
483 |
|
|
o split the_main_loop and re-introduced forward_step |
484 |
|
|
o some recomputations of nIter0 for TAMC |
485 |
|
|
|
486 |
heimbach |
1.41 |
checkpoint40pre2 |
487 |
|
|
o Updated to latest branch of AJA, JMC |
488 |
|
|
o Added gradient check package |
489 |
|
|
o Added routines for passive tracer handling |
490 |
|
|
o Added carbon sequestration sensitivity experiment |
491 |
|
|
|
492 |
heimbach |
1.39 |
checkpoint39 |
493 |
|
|
o Modifications and fixes to support TAMC |
494 |
|
|
(mainly missing or wrong directives) |
495 |
|
|
o Corrected common blocks when fooling TAMC to produce adjoint I/O |
496 |
|
|
in addummy_in_stepping |
497 |
|
|
o Updated verification/vero/ (bug fixes in code/, correct pickups in input/) |
498 |
|
|
o Enabled "sliced" (xz-,yz-) exchanges, needed for obcs. |
499 |
|
|
o Included following packages: |
500 |
|
|
cal: calendar |
501 |
|
|
exf: external forcing |
502 |
|
|
ecco: essential routines to control use of cal, exf |
503 |
|
|
(NB: this is not the full ECCO environment) |
504 |
heimbach |
1.40 |
o disabled some packages by default in genmake |
505 |
heimbach |
1.39 |
|
506 |
heimbach |
1.38 |
checkpoint38 |
507 |
|
|
o see notes_c37_adj.txt |
508 |
|
|
o corrected wrong layer index in external_forcing_t |
509 |
|
|
o replaced the_main_loop/forward_step by the_main_loop |
510 |
|
|
o removed forceoutput from write_state |
511 |
|
|
(replaced criteria for initial/final state) |
512 |
|
|
o added runtime flag for pre-C35 pickups: usePickupBeforeC35 |
513 |
jmc |
1.36 |
|
514 |
jmc |
1.37 |
checkpoint37 |
515 |
|
|
o mdsio.F routine split and packaged in pkg/mdsio |
516 |
|
|
(mdsio.F and mdsio_gl.F still exist in eesupp/src but are not |
517 |
|
|
used unless genmake -disable=mdsio) |
518 |
|
|
o allow a more precise surface-geopotential gradient for the atmosphere |
519 |
|
|
taking into account the change in space of Alpha (=1/rho) at the surface. |
520 |
|
|
o variable "etaN" (replace cg2d_x) is the surface R-anomaly [r unit] |
521 |
|
|
(ocean: sea surface height [m] / atmos: surface pressure anomaly [Pa]) |
522 |
|
|
o Change units: Phi_Hydrostatic (=phiHyd), Phi_Surface(=cg2d_x) and |
523 |
|
|
Phi_NonHydrostatic (=cg3d_x), all have now the dimension of a potential |
524 |
|
|
[m2/s2] (pressure/rhoConst in the ocean ; Geo-Potential in the atmosphere). |
525 |
|
|
o Time-Average diagnostics defined as a pseudo package "timeave". |
526 |
|
|
o pickup files : old pickup (before c35) did not work with new code (c35 |
527 |
|
|
and after) unless activating 2 commented lines in initialise-varia. |
528 |
|
|
o Non-Hydrostatic pickup file Pb fixed. |
529 |
|
|
o bug with Rigid-lid version (since c35) fixed. |
530 |
|
|
|
531 |
jmc |
1.36 |
checkpoint36 |
532 |
jmc |
1.37 |
o implement Crank-Nickelson barotropic time-stepping |
533 |
jmc |
1.36 |
o recover Time-Average diagnostics |
534 |
|
|
o fix Pb in checkpoint (PR#19) |
535 |
|
|
o AIM become a standard package ; clean unused CPP_kees |
536 |
jmc |
1.35 |
|
537 |
|
|
checkpoint35 |
538 |
|
|
o subtantial rewrite of dynamics.f |
539 |
|
|
o allows staggered time-stepping |
540 |
|
|
o packaged obcs, aim (Atmospheric Physics), zonal_filt, shap_filt |
541 |
|
|
o added bottom drag (linear + quadratic) |
542 |
heimbach |
1.33 |
|
543 |
|
|
checkpoint34 |
544 |
|
|
o Modified exchange routines for correct reverse simulation. |
545 |
|
|
o Added verification output to comply with bug fix in impldiff.F |
546 |
|
|
as of c33 (exp2, natl_box). |
547 |
|
|
o Corrected store directives in dynamics.F |
548 |
|
|
o Corrected array boundaries in impldiff.F |
549 |
|
|
o Corrected array dimensions in gmredi. |
550 |
|
|
Added temporary scalars to avoid storage by TAMC (gmredi, kpp). |
551 |
heimbach |
1.34 |
o Added routine GLOBAL_SUM_INT to global_sum.F |
552 |
heimbach |
1.33 |
o Added mdsio_gl.F for ECCO purposes. |
553 |
adcroft |
1.32 |
|
554 |
|
|
checkpoint33 |
555 |
|
|
o Fixed bug in lower BC in impldiff.F |
556 |
|
|
o Fixed confusion about units of forcing arrays in FFIELDS.h |
557 |
|
|
namely Fu,Fv,Qnet,Qsw,EmPmR: |
558 |
|
|
- Removed verification/natl_box/code/external_fields_scale.F |
559 |
|
|
(did not differ from that in model/src) |
560 |
|
|
- Changed units of fu,fv,Qnet,Qsw,EmPmR back to proper units |
561 |
|
|
(see FFIELDS.h for description) |
562 |
|
|
- Scale fu,fv,Qnet,Qsw,EmPmR when used in external_forcing_surf.F, |
563 |
|
|
kpp_calc.F and kpp_transport_t.F |
564 |
|
|
- Removed model/src/external_fields_scale.F and calls to it |
565 |
|
|
- verification/natl_box uses flux data with "atmospheric" sign so |
566 |
|
|
a special version of external_fields_load.F is used to |
567 |
|
|
change the data as it's read in. This way, the arrays |
568 |
|
|
have the right units and signs at all times tha a user could |
569 |
|
|
possibly use them. |
570 |
|
|
o Corrected genmake to delete a temporary file during configuration |
571 |
heimbach |
1.31 |
|
572 |
|
|
checkpoint32 |
573 |
|
|
o Scaling of forcing fields moved from external_forcing.F to |
574 |
|
|
external_fields_scale.F, called directly after loading fields. |
575 |
|
|
o Surface relaxation terms added to surface tendency fields in |
576 |
|
|
extra subroutine. |
577 |
|
|
o impldiff.F changed to avoid storing by TAMC of huge intermediate |
578 |
|
|
fields. |
579 |
|
|
o Changes in GMRedi to comply with packaging structure. |
580 |
|
|
o Modifications and bug fixes in KPP package. |
581 |
|
|
o Verification experiment for KPP added (verification/nat_box/) |
582 |
heimbach |
1.30 |
|
583 |
|
|
checkpoint31 |
584 |
|
|
o Packages interface brought in line with defined standard |
585 |
|
|
-> new routines packages_...F |
586 |
|
|
-> changes in initialise_fixed.F, initialise_varia.F |
587 |
|
|
-> enables initialisation interface for ECCO package |
588 |
|
|
o Rescaling of external forcing fields immediately after read |
589 |
|
|
(removed from external_forcing.F) |
590 |
|
|
-> new: surface_fields_scale.F |
591 |
|
|
-> affects ini_foorcing.F, external_fields_load.F |
592 |
|
|
o Computation of surface tendencies before tendency updates. |
593 |
|
|
-> new: external_forcing_surf.F |
594 |
|
|
o Change of variable names useGMRedi, useKPP, useECCO |
595 |
|
|
o Further changes in dynamics.F, impldiff.F for TAMC |
596 |
|
|
o Tested for experiments 0, 2, 4. |
597 |
|
|
- not yet tested for GMRedi. |
598 |
|
|
- not yet tested for KPP. |
599 |
adcroft |
1.29 |
|
600 |
|
|
checkpoint30 |
601 |
|
|
o Updates for OBCs |
602 |
|
|
o New experiment for test OBCs (internal_wave) |
603 |
|
|
o New output.txt in verification/exp4/results/ |
604 |
|
|
o Updates for KPP: calculation of viscosity corrected, new variables |
605 |
|
|
kpp_dumpFreq and kpp_taveFreq |
606 |
|
|
o CPP'd calls to system routines for TARGET_CRAY_VECTOR (P.H.) |
607 |
|
|
and entry for T90 in genmake |
608 |
adcroft |
1.28 |
|
609 |
|
|
checkpoint29 |
610 |
|
|
o packaged KPP and GM/Redi |
611 |
heimbach |
1.27 |
|
612 |
|
|
checkpoint28 |
613 |
|
|
o Corrected initialization of hFacMin for difference vertical coordinates |
614 |
|
|
o Modified calculation of partial cell thickness to more robust algorithm |
615 |
|
|
o config_summary.F: replaced write_1D_... by write_0D_... |
616 |
|
|
read_write.F: added subroutines write_0D_... |
617 |
|
|
o routines calc_common_factors, calc_gs, calc_gt, calc_phi_hyd, find_rho: |
618 |
|
|
included some initialisations required for TAMC. |
619 |
|
|
o routine calc_isoslopes: modified sqrt computation to make it |
620 |
|
|
differentiable for zero argument. |
621 |
|
|
o routines dynamics, impldiff: |
622 |
|
|
included store directives and tape key computations required for TAMC. |
623 |
|
|
o ALL TAMC related changes are between ifdef ALLOW_AUTODIFF_TAMC |
624 |
adcroft |
1.26 |
|
625 |
|
|
checkpoint27 |
626 |
|
|
o fixed calc_isoslopes() to so that cancellation of terms in tensor |
627 |
|
|
formulation works properly with variable resolution. |
628 |
|
|
o restructured the calling tree between the_model_main() and dynamics() |
629 |
|
|
o split initialise() into initialise_fixed() and initialise_varia() |
630 |
|
|
o introduced initialization file pSurfInitFile for free surface (cg2d_x) |
631 |
|
|
in new routine ini_psurf() |
632 |
adcroft |
1.25 |
|
633 |
|
|
checkpoint26 |
634 |
|
|
o moved some #ifdef in optional routines to encompass everything |
635 |
|
|
except the argument declarations. This was using up some memory. |
636 |
|
|
o fixed macros like _ADT to work with both versions of Linux cpp |
637 |
|
|
o cleaned up some unused and uninitialized variables |
638 |
|
|
(helps when debugging with strict compile options) |
639 |
|
|
o split up CPP_EEOPTIONS.h into options and macros |
640 |
|
|
(macros are now in eesupp/inc/CPP_EEMACROS.h) |
641 |
|
|
o patch for 2 processor JAM mode |
642 |
adcroft |
1.24 |
|
643 |
|
|
checkpoint25 |
644 |
|
|
o updates for OBCs and NH |
645 |
|
|
o dramatically reduced memory usage |
646 |
|
|
o added "JAM" routines for use on Artic network |
647 |
|
|
o parameterization of convection by implicit vertical diffusion |
648 |
|
|
o added a diagnostic of convective index |
649 |
|
|
o moved call to calc_divg_hat() from dynamics() to solve_for_pressure() |
650 |
|
|
(this is was partly for OBCs and NH but also in anticipation of |
651 |
|
|
an explicit free-surface option) |
652 |
|
|
o initial state input files for U and V |
653 |
adcroft |
1.23 |
|
654 |
|
|
checkpoint24 |
655 |
|
|
o Removed some spurious "REAL"s |
656 |
|
|
o Updated KPP to latest version from JPL |
657 |
|
|
o Added a COS(latitude) in horizontal viscosity |
658 |
adcroft |
1.22 |
|
659 |
|
|
checkpoint23 |
660 |
|
|
o Added del^4 diffusion for salt and temperature |
661 |
|
|
o Multiple minor fixes (implicit none's, arguments to global_sum, etc.) |
662 |
adcroft |
1.21 |
|
663 |
|
|
checkpoint22 |
664 |
|
|
o Made many small changes: implicit none, format(i5), etc... |
665 |
|
|
o Introduced KPP mixing scheme (compiles and runs but *not* tested) |
666 |
adcroft |
1.20 |
|
667 |
|
|
checkpoint21 |
668 |
|
|
o Introduced new I/O package that supports direct-access records (mdsio.F) |
669 |
|
|
o Split-up mid-level I/O routines |
670 |
|
|
o Updated input data for experiments 0,1,2,4 and 5 |
671 |
|
|
o Finally removed the genmake.* scripts (everyone seems happy with genmake) |
672 |
adcroft |
1.18 |
|
673 |
adcroft |
1.19 |
checkpoint20 |
674 |
|
|
o Tidied up open-boundaries some more |
675 |
|
|
o Added non-hydrostatic code |
676 |
|
|
o Fixed some input data |
677 |
|
|
o Modified MPI start-up to work in "coupled" context. |
678 |
|
|
|
679 |
adcroft |
1.18 |
checkpoint19 |
680 |
|
|
o Tidied up directory structure for verification experiments. |
681 |
|
|
o Added new code for open boundaries. |
682 |
|
|
o Corrected advective terms near boundaries. |
683 |
|
|
o Added CPP flag for "old UV" geometry and corrected spherical geometry. |
684 |
|
|
o Implemented free-slip/no-slip BCs and del^4 dissipation. |
685 |
adcroft |
1.19 |
o Split default parameters out of ini_parms.F into set_defaults.F. |
686 |
cnh |
1.17 |
|
687 |
|
|
checkpoint18 |
688 |
|
|
o Further changes for optional code generation with |
689 |
|
|
CPP - ugh! |
690 |
cnh |
1.16 |
|
691 |
|
|
checkpoint17 |
692 |
|
|
o Beginning to incorporating modularity |
693 |
|
|
for supporting atmos. and ocean configs. |
694 |
|
|
o Small changes for TAMC complinace |
695 |
|
|
o New ultra simple test case. Barotropic box |
696 |
|
|
configuration "exp0". |
697 |
cnh |
1.15 |
|
698 |
|
|
checkpoint16 |
699 |
|
|
o Minor changes to exchange routines to support |
700 |
|
|
accumulation in reverse mode. Adjoint of an |
701 |
|
|
assignment is an addition. |
702 |
|
|
o Changes to support compilation by TAMC (LR(1) |
703 |
|
|
syntax) and by g77 under Linux ( 72 character |
704 |
|
|
limit ). |
705 |
cnh |
1.14 |
|
706 |
|
|
checkpoint15 |
707 |
|
|
Rewrote exchange routines to allow |
708 |
|
|
o General tile <-> tile connectivity. |
709 |
|
|
o TAMC reverse mode flag ( is this really needed? ) |
710 |
|
|
o Variable width overlap and exchange region widths. |
711 |
|
|
o Hooks for sharing data via DMA, Arctic, Memory Channel, |
712 |
|
|
shmput/shmget, VIA, SYSV shmem and every other cool |
713 |
|
|
communication method. |
714 |
cnh |
1.13 |
|
715 |
|
|
checkpoint14 |
716 |
|
|
Consistent isomorphism chages made. These allow dynamical core |
717 |
|
|
to support both pressure and meters as a vertical coordinate. |
718 |
cnh |
1.12 |
|
719 |
|
|
checkpoint13 |
720 |
|
|
Release which corrects global_max problem and a couple |
721 |
|
|
of KGM time-averaging diagnostic errors. Also contains |
722 |
|
|
a double-gyre experiment setup as well as the baseline |
723 |
|
|
4 degree global template. The double gyre template is |
724 |
|
|
organised to allow it to be applied automatically to |
725 |
|
|
the baseline configuration. |
726 |
adcroft |
1.11 |
|
727 |
|
|
branch-point-rdot |
728 |
|
|
A few tidy-ups have been made bt the real point of this |
729 |
|
|
check-point (excuse the pun) is to allow a branch to be |
730 |
|
|
made for the purposes of adding the rDot alterations. |
731 |
|
|
I don't want to commit the rDot to the main-trunk until |
732 |
|
|
we've actually tested it... |
733 |
cnh |
1.10 |
|
734 |
|
|
checkpoint12 |
735 |
|
|
Tidy up and added generic genmake script (formerly |
736 |
|
|
configure script). |
737 |
|
|
Released to testers. |
738 |
adcroft |
1.9 |
|
739 |
|
|
checkpoint11 |
740 |
|
|
Re-arranged initialise() and introduced ini_vertical_grid() |
741 |
|
|
and ini_masks_etc(). |
742 |
adcroft |
1.8 |
|
743 |
|
|
checkpoint10 |
744 |
|
|
Introduced the configure script. |
745 |
|
|
Separated out the diags package. |
746 |
|
|
Added template for writing time-averages of tile/intermediate quantities. |
747 |
|
|
Updated SIZE.h in exp2 and made the data big-endian. |
748 |
adcroft |
1.7 |
|
749 |
|
|
checkpoint9 |
750 |
|
|
MPI fix. Filename changes (meta/data). salbin*y stuff. |
751 |
|
|
General tidy-up. |
752 |
|
|
SST.bin SSS.bin added to verification/exp2 |
753 |
adcroft |
1.6 |
|
754 |
|
|
checkpoint8 |
755 |
|
|
Inludes time-dependant forcing and time-averaging. |
756 |
|
|
Works at 4x4 and 2.8125x2.8125 global |
757 |
|
|
|
758 |
|
|
checkpoint7-4degree-ref |
759 |
|
|
Branch from checkpoint7. Released for application to |
760 |
|
|
global modeling and general modeling - process studies, regional |
761 |
|
|
model etc.. |
762 |
|
|
Configured for verification/exp2 - 4 degree global, two process. |
763 |
cnh |
1.5 |
|
764 |
|
|
checkpoint7 |
765 |
|
|
Created by cnh |
766 |
|
|
Simple 4 degree global simulation |
767 |
|
|
configuration. |
768 |
|
|
Includes climatological wind, |
769 |
|
|
hydrography, bathymetry etc |
770 |
|
|
Does not include Heat Flux and E-P |
771 |
cnh |
1.4 |
|
772 |
|
|
checkpoint6 |
773 |
|
|
Created by cnh |
774 |
|
|
merged checkpoint5 with CD and |
775 |
|
|
spherical polar code. |
776 |
|
|
Still some problems with GM Redi |
777 |
|
|
abd full topography. |
778 |
cnh |
1.3 |
|
779 |
|
|
checkpoint5 |
780 |
|
|
Created by AJA |
781 |
|
|
contains updates to GM Redi |
782 |
|
|
and reordered timestepping loop |
783 |
|
|
for Implicit Diffusion. |
784 |
cnh |
1.2 |
|
785 |
|
|
checkpoint4 |
786 |
|
|
Created by cnh |
787 |
|
|
Contains memory saving macros ( _rdxc etc..) for when |
788 |
|
|
grid variations are limited. |
789 |
|
|
Contains polynomial coeffs for EOS and knudsen program |
790 |
|
|
for generation. |
791 |
|
|
|
792 |
cnh |
1.1 |
checkpoint3 |
793 |
|
|
Created by cnh |
794 |
|
|
Added extra flags for runtime options |
795 |
|
|
Added this file |
796 |
|
|
Added implicit free-surface |
797 |
|
|
Added pre-conditioner |
798 |
|
|
Put compare01 into repository ( compare01/... ) |
799 |
|
|
Put data and eedata into repository ( verification/exp1 ) |
800 |
|
|
|
801 |
|
|
checkpoint2 |
802 |
|
|
Created by AJA |
803 |
|
|
Added GM/Redi |
804 |
|
|
|
805 |
|
|
checkpoint1 |
806 |
|
|
Created by AJA |
807 |
|
|
Restructured kloop in dynamics.F |
808 |
|
|
Added non-linear EOS |
809 |
|
|
|
810 |
cnh |
1.2 |
baseline |
811 |
|
|
Original checked in code |
812 |
cnh |
1.1 |
|