1 |
adcroft |
1.51 |
$Header: /u/gcmpack/models/MITgcmUV/doc/tag-index,v 1.50 2001/09/27 14:24:19 adcroft Exp $ |
2 |
cnh |
1.1 |
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3 |
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Notes on tags used in MITgcmUV |
4 |
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============================== |
5 |
adcroft |
1.51 |
|
6 |
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checkpoint41 |
7 |
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o re-formatted/added comments in prologues of key subroutines |
8 |
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to work with protex |
9 |
heimbach |
1.47 |
|
10 |
adcroft |
1.50 |
checkpoint40 |
11 |
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o moved calc_gs, calc_gt and calc_tr1 back to model/src |
12 |
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o added FLT (floats) package from Arne along with demo. experiment |
13 |
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o re-arranged Adams-Bashforth scheme for tracers to allow easier |
14 |
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implementation of forward-in-time forcing terms |
15 |
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o more mods for non-linear free-surface including new variable |
16 |
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o modified multi-dim method to work on cube |
17 |
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o bug fix in KPP (from DM) |
18 |
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|
19 |
adcroft |
1.49 |
checkpoint40pre9 |
20 |
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o added DST advection schemes |
21 |
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o fix MPI bug on SGI's |
22 |
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o modifications for non-linear free-surface |
23 |
|
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o fixed conditionals for fixed flow/passive tracer only mode |
24 |
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o added tension/strain form of stress tensor |
25 |
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o changes to commenting of arguments for TAF/TAMC |
26 |
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o added/updated many matlab scripts |
27 |
adcroft |
1.50 |
o added multi-dimensional advection method for tracers |
28 |
adcroft |
1.49 |
|
29 |
adcroft |
1.48 |
checkpoint40pre8 |
30 |
heimbach |
1.47 |
o new package rw/ |
31 |
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Added method for dumping intermediate local arrays: |
32 |
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mdsio_writetile - same as mdsio_writefield except works from inside |
33 |
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bi,bj loop |
34 |
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mdsio_writelocal - same as mdsio_writetile except works for local |
35 |
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arrays |
36 |
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write_local_r? - higher-level wrapper for mdsio_writelocal |
37 |
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Controlled by diagFreq. Defaults to zero (ie. no dumps) |
38 |
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Example given at end of mom_vecinv.F that dumps some local arrays. |
39 |
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o replaced calc_mom_rhs.F by mom_fluxform.F/mom_vecinc.F to |
40 |
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control flux-form versus vector invariant code. |
41 |
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Switch is runtime flag vectorInvariantMomentum (defaults to false) |
42 |
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or genmake -DISABLE ... |
43 |
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o TAMC-related update to cope with mom_fluxform.F/mom_vecinc.F |
44 |
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(additional storing is now needed for case vecinv; |
45 |
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currently nothing implemented to switch this storing off |
46 |
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in case fluxform is used since no CPP flag available). |
47 |
heimbach |
1.46 |
|
48 |
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checkpoint40pre7 |
49 |
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o bug fix in dynamics.F |
50 |
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calc_viscosity called before k=1,Nr loop. |
51 |
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o added some #ifdef's ALLOW_PASSIVE_TRACER |
52 |
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o cleaned initialisations in ctrl_map_ini |
53 |
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related to TAF |
54 |
heimbach |
1.45 |
|
55 |
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checkpoint40pre6 |
56 |
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o split dynamics into thermodynamics & dynamics |
57 |
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o corresponding split of calc_diffusivity into |
58 |
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calc_diffusivity, calc_viscosity |
59 |
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(kpp_calc_diff, kpp_calc_visc). |
60 |
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o Added diffkr, kapgm to control variables |
61 |
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o bug fix in gmredi_slope_limit for ldd97 |
62 |
adcroft |
1.44 |
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63 |
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checkpoint40pre5 |
64 |
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o proper initialization of Adams-Bashforth time stepping |
65 |
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+ uses forward step for very first step of model (iter=0) |
66 |
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o re-generated *all* output since almost all output is modified by this |
67 |
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change (sorry but we've been putting this one off for about 2 years) |
68 |
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+ natl_box, aim.5l_Equatorial_Channel and aim.5l_zon-ave were |
69 |
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*not* regenerated since they are already out of date and I don't |
70 |
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want to create the impression that they are suddenly working. |
71 |
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o removed KAP stuff for DEC's |
72 |
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o modified/added many .cvsignore files in */code and */input |
73 |
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o added new expt "solid-body.cs-32x32x1" |
74 |
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+ this uses an alternative form of ini_curvilinear_grid.F which |
75 |
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is not necessarily any better than the current one... |
76 |
heimbach |
1.43 |
|
77 |
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checkpoint40pre4 |
78 |
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o added re-initialisations of utrans,vtrans,rtrans in |
79 |
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calc_common_factors which are crucial for TAF. |
80 |
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o extended iMin,jMin range for calc_common_factors, |
81 |
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calc_diffusivity |
82 |
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o added option ALLOW_PASSIVE_TRACER |
83 |
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o a few minor updates and fixes |
84 |
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85 |
heimbach |
1.42 |
checkpoint40pre3 |
86 |
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o created calc_gtr1.F for gad package |
87 |
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o split the_main_loop and re-introduced forward_step |
88 |
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o some recomputations of nIter0 for TAMC |
89 |
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90 |
heimbach |
1.41 |
checkpoint40pre2 |
91 |
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o Updated to latest branch of AJA, JMC |
92 |
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o Added gradient check package |
93 |
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o Added routines for passive tracer handling |
94 |
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o Added carbon sequestration sensitivity experiment |
95 |
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96 |
heimbach |
1.39 |
checkpoint39 |
97 |
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o Modifications and fixes to support TAMC |
98 |
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(mainly missing or wrong directives) |
99 |
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o Corrected common blocks when fooling TAMC to produce adjoint I/O |
100 |
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in addummy_in_stepping |
101 |
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o Updated verification/vero/ (bug fixes in code/, correct pickups in input/) |
102 |
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o Enabled "sliced" (xz-,yz-) exchanges, needed for obcs. |
103 |
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o Included following packages: |
104 |
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cal: calendar |
105 |
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exf: external forcing |
106 |
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ecco: essential routines to control use of cal, exf |
107 |
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(NB: this is not the full ECCO environment) |
108 |
heimbach |
1.40 |
o disabled some packages by default in genmake |
109 |
heimbach |
1.39 |
|
110 |
heimbach |
1.38 |
checkpoint38 |
111 |
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o see notes_c37_adj.txt |
112 |
|
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o corrected wrong layer index in external_forcing_t |
113 |
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o replaced the_main_loop/forward_step by the_main_loop |
114 |
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o removed forceoutput from write_state |
115 |
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(replaced criteria for initial/final state) |
116 |
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o added runtime flag for pre-C35 pickups: usePickupBeforeC35 |
117 |
jmc |
1.36 |
|
118 |
jmc |
1.37 |
checkpoint37 |
119 |
|
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o mdsio.F routine split and packaged in pkg/mdsio |
120 |
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(mdsio.F and mdsio_gl.F still exist in eesupp/src but are not |
121 |
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used unless genmake -disable=mdsio) |
122 |
|
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o allow a more precise surface-geopotential gradient for the atmosphere |
123 |
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taking into account the change in space of Alpha (=1/rho) at the surface. |
124 |
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o variable "etaN" (replace cg2d_x) is the surface R-anomaly [r unit] |
125 |
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(ocean: sea surface height [m] / atmos: surface pressure anomaly [Pa]) |
126 |
|
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o Change units: Phi_Hydrostatic (=phiHyd), Phi_Surface(=cg2d_x) and |
127 |
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Phi_NonHydrostatic (=cg3d_x), all have now the dimension of a potential |
128 |
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[m2/s2] (pressure/rhoConst in the ocean ; Geo-Potential in the atmosphere). |
129 |
|
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o Time-Average diagnostics defined as a pseudo package "timeave". |
130 |
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o pickup files : old pickup (before c35) did not work with new code (c35 |
131 |
|
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and after) unless activating 2 commented lines in initialise-varia. |
132 |
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|
o Non-Hydrostatic pickup file Pb fixed. |
133 |
|
|
o bug with Rigid-lid version (since c35) fixed. |
134 |
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|
135 |
jmc |
1.36 |
checkpoint36 |
136 |
jmc |
1.37 |
o implement Crank-Nickelson barotropic time-stepping |
137 |
jmc |
1.36 |
o recover Time-Average diagnostics |
138 |
|
|
o fix Pb in checkpoint (PR#19) |
139 |
|
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o AIM become a standard package ; clean unused CPP_kees |
140 |
jmc |
1.35 |
|
141 |
|
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checkpoint35 |
142 |
|
|
o subtantial rewrite of dynamics.f |
143 |
|
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o allows staggered time-stepping |
144 |
|
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o packaged obcs, aim (Atmospheric Physics), zonal_filt, shap_filt |
145 |
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o added bottom drag (linear + quadratic) |
146 |
heimbach |
1.33 |
|
147 |
|
|
checkpoint34 |
148 |
|
|
o Modified exchange routines for correct reverse simulation. |
149 |
|
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o Added verification output to comply with bug fix in impldiff.F |
150 |
|
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as of c33 (exp2, natl_box). |
151 |
|
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o Corrected store directives in dynamics.F |
152 |
|
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o Corrected array boundaries in impldiff.F |
153 |
|
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o Corrected array dimensions in gmredi. |
154 |
|
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Added temporary scalars to avoid storage by TAMC (gmredi, kpp). |
155 |
heimbach |
1.34 |
o Added routine GLOBAL_SUM_INT to global_sum.F |
156 |
heimbach |
1.33 |
o Added mdsio_gl.F for ECCO purposes. |
157 |
adcroft |
1.32 |
|
158 |
|
|
checkpoint33 |
159 |
|
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o Fixed bug in lower BC in impldiff.F |
160 |
|
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o Fixed confusion about units of forcing arrays in FFIELDS.h |
161 |
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namely Fu,Fv,Qnet,Qsw,EmPmR: |
162 |
|
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- Removed verification/natl_box/code/external_fields_scale.F |
163 |
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(did not differ from that in model/src) |
164 |
|
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- Changed units of fu,fv,Qnet,Qsw,EmPmR back to proper units |
165 |
|
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(see FFIELDS.h for description) |
166 |
|
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- Scale fu,fv,Qnet,Qsw,EmPmR when used in external_forcing_surf.F, |
167 |
|
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kpp_calc.F and kpp_transport_t.F |
168 |
|
|
- Removed model/src/external_fields_scale.F and calls to it |
169 |
|
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- verification/natl_box uses flux data with "atmospheric" sign so |
170 |
|
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a special version of external_fields_load.F is used to |
171 |
|
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change the data as it's read in. This way, the arrays |
172 |
|
|
have the right units and signs at all times tha a user could |
173 |
|
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possibly use them. |
174 |
|
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o Corrected genmake to delete a temporary file during configuration |
175 |
heimbach |
1.31 |
|
176 |
|
|
checkpoint32 |
177 |
|
|
o Scaling of forcing fields moved from external_forcing.F to |
178 |
|
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external_fields_scale.F, called directly after loading fields. |
179 |
|
|
o Surface relaxation terms added to surface tendency fields in |
180 |
|
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extra subroutine. |
181 |
|
|
o impldiff.F changed to avoid storing by TAMC of huge intermediate |
182 |
|
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fields. |
183 |
|
|
o Changes in GMRedi to comply with packaging structure. |
184 |
|
|
o Modifications and bug fixes in KPP package. |
185 |
|
|
o Verification experiment for KPP added (verification/nat_box/) |
186 |
heimbach |
1.30 |
|
187 |
|
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checkpoint31 |
188 |
|
|
o Packages interface brought in line with defined standard |
189 |
|
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-> new routines packages_...F |
190 |
|
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-> changes in initialise_fixed.F, initialise_varia.F |
191 |
|
|
-> enables initialisation interface for ECCO package |
192 |
|
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o Rescaling of external forcing fields immediately after read |
193 |
|
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(removed from external_forcing.F) |
194 |
|
|
-> new: surface_fields_scale.F |
195 |
|
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-> affects ini_foorcing.F, external_fields_load.F |
196 |
|
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o Computation of surface tendencies before tendency updates. |
197 |
|
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-> new: external_forcing_surf.F |
198 |
|
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o Change of variable names useGMRedi, useKPP, useECCO |
199 |
|
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o Further changes in dynamics.F, impldiff.F for TAMC |
200 |
|
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o Tested for experiments 0, 2, 4. |
201 |
|
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- not yet tested for GMRedi. |
202 |
|
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- not yet tested for KPP. |
203 |
adcroft |
1.29 |
|
204 |
|
|
checkpoint30 |
205 |
|
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o Updates for OBCs |
206 |
|
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o New experiment for test OBCs (internal_wave) |
207 |
|
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o New output.txt in verification/exp4/results/ |
208 |
|
|
o Updates for KPP: calculation of viscosity corrected, new variables |
209 |
|
|
kpp_dumpFreq and kpp_taveFreq |
210 |
|
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o CPP'd calls to system routines for TARGET_CRAY_VECTOR (P.H.) |
211 |
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and entry for T90 in genmake |
212 |
adcroft |
1.28 |
|
213 |
|
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checkpoint29 |
214 |
|
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o packaged KPP and GM/Redi |
215 |
heimbach |
1.27 |
|
216 |
|
|
checkpoint28 |
217 |
|
|
o Corrected initialization of hFacMin for difference vertical coordinates |
218 |
|
|
o Modified calculation of partial cell thickness to more robust algorithm |
219 |
|
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o config_summary.F: replaced write_1D_... by write_0D_... |
220 |
|
|
read_write.F: added subroutines write_0D_... |
221 |
|
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o routines calc_common_factors, calc_gs, calc_gt, calc_phi_hyd, find_rho: |
222 |
|
|
included some initialisations required for TAMC. |
223 |
|
|
o routine calc_isoslopes: modified sqrt computation to make it |
224 |
|
|
differentiable for zero argument. |
225 |
|
|
o routines dynamics, impldiff: |
226 |
|
|
included store directives and tape key computations required for TAMC. |
227 |
|
|
o ALL TAMC related changes are between ifdef ALLOW_AUTODIFF_TAMC |
228 |
adcroft |
1.26 |
|
229 |
|
|
checkpoint27 |
230 |
|
|
o fixed calc_isoslopes() to so that cancellation of terms in tensor |
231 |
|
|
formulation works properly with variable resolution. |
232 |
|
|
o restructured the calling tree between the_model_main() and dynamics() |
233 |
|
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o split initialise() into initialise_fixed() and initialise_varia() |
234 |
|
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o introduced initialization file pSurfInitFile for free surface (cg2d_x) |
235 |
|
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in new routine ini_psurf() |
236 |
adcroft |
1.25 |
|
237 |
|
|
checkpoint26 |
238 |
|
|
o moved some #ifdef in optional routines to encompass everything |
239 |
|
|
except the argument declarations. This was using up some memory. |
240 |
|
|
o fixed macros like _ADT to work with both versions of Linux cpp |
241 |
|
|
o cleaned up some unused and uninitialized variables |
242 |
|
|
(helps when debugging with strict compile options) |
243 |
|
|
o split up CPP_EEOPTIONS.h into options and macros |
244 |
|
|
(macros are now in eesupp/inc/CPP_EEMACROS.h) |
245 |
|
|
o patch for 2 processor JAM mode |
246 |
adcroft |
1.24 |
|
247 |
|
|
checkpoint25 |
248 |
|
|
o updates for OBCs and NH |
249 |
|
|
o dramatically reduced memory usage |
250 |
|
|
o added "JAM" routines for use on Artic network |
251 |
|
|
o parameterization of convection by implicit vertical diffusion |
252 |
|
|
o added a diagnostic of convective index |
253 |
|
|
o moved call to calc_divg_hat() from dynamics() to solve_for_pressure() |
254 |
|
|
(this is was partly for OBCs and NH but also in anticipation of |
255 |
|
|
an explicit free-surface option) |
256 |
|
|
o initial state input files for U and V |
257 |
adcroft |
1.23 |
|
258 |
|
|
checkpoint24 |
259 |
|
|
o Removed some spurious "REAL"s |
260 |
|
|
o Updated KPP to latest version from JPL |
261 |
|
|
o Added a COS(latitude) in horizontal viscosity |
262 |
adcroft |
1.22 |
|
263 |
|
|
checkpoint23 |
264 |
|
|
o Added del^4 diffusion for salt and temperature |
265 |
|
|
o Multiple minor fixes (implicit none's, arguments to global_sum, etc.) |
266 |
adcroft |
1.21 |
|
267 |
|
|
checkpoint22 |
268 |
|
|
o Made many small changes: implicit none, format(i5), etc... |
269 |
|
|
o Introduced KPP mixing scheme (compiles and runs but *not* tested) |
270 |
adcroft |
1.20 |
|
271 |
|
|
checkpoint21 |
272 |
|
|
o Introduced new I/O package that supports direct-access records (mdsio.F) |
273 |
|
|
o Split-up mid-level I/O routines |
274 |
|
|
o Updated input data for experiments 0,1,2,4 and 5 |
275 |
|
|
o Finally removed the genmake.* scripts (everyone seems happy with genmake) |
276 |
adcroft |
1.18 |
|
277 |
adcroft |
1.19 |
checkpoint20 |
278 |
|
|
o Tidied up open-boundaries some more |
279 |
|
|
o Added non-hydrostatic code |
280 |
|
|
o Fixed some input data |
281 |
|
|
o Modified MPI start-up to work in "coupled" context. |
282 |
|
|
|
283 |
adcroft |
1.18 |
checkpoint19 |
284 |
|
|
o Tidied up directory structure for verification experiments. |
285 |
|
|
o Added new code for open boundaries. |
286 |
|
|
o Corrected advective terms near boundaries. |
287 |
|
|
o Added CPP flag for "old UV" geometry and corrected spherical geometry. |
288 |
|
|
o Implemented free-slip/no-slip BCs and del^4 dissipation. |
289 |
adcroft |
1.19 |
o Split default parameters out of ini_parms.F into set_defaults.F. |
290 |
cnh |
1.17 |
|
291 |
|
|
checkpoint18 |
292 |
|
|
o Further changes for optional code generation with |
293 |
|
|
CPP - ugh! |
294 |
cnh |
1.16 |
|
295 |
|
|
checkpoint17 |
296 |
|
|
o Beginning to incorporating modularity |
297 |
|
|
for supporting atmos. and ocean configs. |
298 |
|
|
o Small changes for TAMC complinace |
299 |
|
|
o New ultra simple test case. Barotropic box |
300 |
|
|
configuration "exp0". |
301 |
cnh |
1.15 |
|
302 |
|
|
checkpoint16 |
303 |
|
|
o Minor changes to exchange routines to support |
304 |
|
|
accumulation in reverse mode. Adjoint of an |
305 |
|
|
assignment is an addition. |
306 |
|
|
o Changes to support compilation by TAMC (LR(1) |
307 |
|
|
syntax) and by g77 under Linux ( 72 character |
308 |
|
|
limit ). |
309 |
cnh |
1.14 |
|
310 |
|
|
checkpoint15 |
311 |
|
|
Rewrote exchange routines to allow |
312 |
|
|
o General tile <-> tile connectivity. |
313 |
|
|
o TAMC reverse mode flag ( is this really needed? ) |
314 |
|
|
o Variable width overlap and exchange region widths. |
315 |
|
|
o Hooks for sharing data via DMA, Arctic, Memory Channel, |
316 |
|
|
shmput/shmget, VIA, SYSV shmem and every other cool |
317 |
|
|
communication method. |
318 |
cnh |
1.13 |
|
319 |
|
|
checkpoint14 |
320 |
|
|
Consistent isomorphism chages made. These allow dynamical core |
321 |
|
|
to support both pressure and meters as a vertical coordinate. |
322 |
cnh |
1.12 |
|
323 |
|
|
checkpoint13 |
324 |
|
|
Release which corrects global_max problem and a couple |
325 |
|
|
of KGM time-averaging diagnostic errors. Also contains |
326 |
|
|
a double-gyre experiment setup as well as the baseline |
327 |
|
|
4 degree global template. The double gyre template is |
328 |
|
|
organised to allow it to be applied automatically to |
329 |
|
|
the baseline configuration. |
330 |
adcroft |
1.11 |
|
331 |
|
|
branch-point-rdot |
332 |
|
|
A few tidy-ups have been made bt the real point of this |
333 |
|
|
check-point (excuse the pun) is to allow a branch to be |
334 |
|
|
made for the purposes of adding the rDot alterations. |
335 |
|
|
I don't want to commit the rDot to the main-trunk until |
336 |
|
|
we've actually tested it... |
337 |
cnh |
1.10 |
|
338 |
|
|
checkpoint12 |
339 |
|
|
Tidy up and added generic genmake script (formerly |
340 |
|
|
configure script). |
341 |
|
|
Released to testers. |
342 |
adcroft |
1.9 |
|
343 |
|
|
checkpoint11 |
344 |
|
|
Re-arranged initialise() and introduced ini_vertical_grid() |
345 |
|
|
and ini_masks_etc(). |
346 |
adcroft |
1.8 |
|
347 |
|
|
checkpoint10 |
348 |
|
|
Introduced the configure script. |
349 |
|
|
Separated out the diags package. |
350 |
|
|
Added template for writing time-averages of tile/intermediate quantities. |
351 |
|
|
Updated SIZE.h in exp2 and made the data big-endian. |
352 |
adcroft |
1.7 |
|
353 |
|
|
checkpoint9 |
354 |
|
|
MPI fix. Filename changes (meta/data). salbin*y stuff. |
355 |
|
|
General tidy-up. |
356 |
|
|
SST.bin SSS.bin added to verification/exp2 |
357 |
adcroft |
1.6 |
|
358 |
|
|
checkpoint8 |
359 |
|
|
Inludes time-dependant forcing and time-averaging. |
360 |
|
|
Works at 4x4 and 2.8125x2.8125 global |
361 |
|
|
|
362 |
|
|
checkpoint7-4degree-ref |
363 |
|
|
Branch from checkpoint7. Released for application to |
364 |
|
|
global modeling and general modeling - process studies, regional |
365 |
|
|
model etc.. |
366 |
|
|
Configured for verification/exp2 - 4 degree global, two process. |
367 |
cnh |
1.5 |
|
368 |
|
|
checkpoint7 |
369 |
|
|
Created by cnh |
370 |
|
|
Simple 4 degree global simulation |
371 |
|
|
configuration. |
372 |
|
|
Includes climatological wind, |
373 |
|
|
hydrography, bathymetry etc |
374 |
|
|
Does not include Heat Flux and E-P |
375 |
cnh |
1.4 |
|
376 |
|
|
checkpoint6 |
377 |
|
|
Created by cnh |
378 |
|
|
merged checkpoint5 with CD and |
379 |
|
|
spherical polar code. |
380 |
|
|
Still some problems with GM Redi |
381 |
|
|
abd full topography. |
382 |
cnh |
1.3 |
|
383 |
|
|
checkpoint5 |
384 |
|
|
Created by AJA |
385 |
|
|
contains updates to GM Redi |
386 |
|
|
and reordered timestepping loop |
387 |
|
|
for Implicit Diffusion. |
388 |
cnh |
1.2 |
|
389 |
|
|
checkpoint4 |
390 |
|
|
Created by cnh |
391 |
|
|
Contains memory saving macros ( _rdxc etc..) for when |
392 |
|
|
grid variations are limited. |
393 |
|
|
Contains polynomial coeffs for EOS and knudsen program |
394 |
|
|
for generation. |
395 |
|
|
|
396 |
cnh |
1.1 |
checkpoint3 |
397 |
|
|
Created by cnh |
398 |
|
|
Added extra flags for runtime options |
399 |
|
|
Added this file |
400 |
|
|
Added implicit free-surface |
401 |
|
|
Added pre-conditioner |
402 |
|
|
Put compare01 into repository ( compare01/... ) |
403 |
|
|
Put data and eedata into repository ( verification/exp1 ) |
404 |
|
|
|
405 |
|
|
checkpoint2 |
406 |
|
|
Created by AJA |
407 |
|
|
Added GM/Redi |
408 |
|
|
|
409 |
|
|
checkpoint1 |
410 |
|
|
Created by AJA |
411 |
|
|
Restructured kloop in dynamics.F |
412 |
|
|
Added non-linear EOS |
413 |
|
|
|
414 |
cnh |
1.2 |
baseline |
415 |
|
|
Original checked in code |
416 |
cnh |
1.1 |
|