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$Header$ |
$Header$ |
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MITgcmUV Getting Started |
MITgcmUV Getting Started |
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======================== |
======================== |
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o Introduction |
o Introduction |
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o Install |
This note is a guide to using the MIT General Circulation Model Ultra Verstaile |
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tar -xvf ... |
implementation, MITgmcUV. MITgcmUV is a Fortran code that implements the |
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cd tools |
algorithm described in Marshall et. al. 1997, Hill, Adcroft, ... |
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genmake.dec |
The MITgcmUV implementation is designed to work efficiently on all classes |
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cd ../bin |
of computer platforms. It can be used in both a single processor mode |
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ln -s ../tools/Makefile.dec makefile |
and a parallel processor mode. Parallel processing can be either multi-threaded |
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make depend |
shared memory such as that found on CRAY T90 machines or it can be multi-process |
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make |
distributed memory. A set of "execution enviroment" support routines are |
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setenv PARALLEL 1 |
used to allow the same numerical code to run on top of a single-process, multi-threaded |
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../exe/barrier |
or distributed multi-process configuration. |
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o Installing |
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To setup the model on a particular computer the code tree must be created |
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and appropriate compile and run scripts set up. For some platforms |
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the necessary scripts are included in the release - in this case follow |
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the steps below: |
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1. Extract MITgcmUV from the downloadable archive |
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tar -xvf checkpoint12.tar |
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2. Create platform specific make file |
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For example on a Digital UNIX machine the script "genmake.dec" can |
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be used as shown below |
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cd bin |
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../tools/genmake |
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cp Makefile.alpha Makefile ( On Alpha machine) |
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o Running |
3. Now create header file dependency entries |
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make depend |
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4. Compile code |
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make |
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5. Copy input files |
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cp ../verification/exp2/[a-z]* ../verification/exp2/*bin . |
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eedata |
6. Run baseline test case |
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data |
setenv PARALLEL 1 |
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dmpirun -np 2 ../exe/mitgcmuv ( Under Digital UNIX ) |
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mpirun.p4shmem ../exe/mitgcmuv -np 2 ( Under Solaris + mpich) |
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This runs a 4 degree global ocean climatological simulation. |
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By default this code is set to use two processors splitting |
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the model domain along the equator. Textual output is written |
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to files STDOUT.* and STDERR.* with one file for each process. |
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Model fileds are written to files suffixed .data and .meta |
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These files are written on a per process basis. The .meta |
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file indicates the location and shape of the subdomain in |
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each .data file. |
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This 4 degree global ocean climatological simulation is the baseline |
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configuration for the MITgcmUV code. The change files that |
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convert the model to a different configuration in the |
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verification directory all assume that the model is configured for |
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the baseline case and change the model code accordingly. |
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o Running |
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- Input and output files |
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Required files |
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============== |
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The model is configured to look for two files with fixed names. |
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These files are called |
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"eedata" and "data". |
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The file eedata contains "execution environment" data. At present |
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this consists of a specification of the number of threads to |
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use in X and Y under multithreaded execution. |
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- Serial execution |
- Serial execution |
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- Parallel execution. Hybrid |
- Parallel execution. Hybrid |
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o References |
o Cutomising the code |
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Model structure |
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=============== |
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The "numerical" model is contained within a execution |
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environment support wrapper. This wrapper is designed |
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to provide a general framework for grid-point models. |
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MITgcmUV is a specific numerical model that uses the |
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framework. |
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Under this structure the model is split into |
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execution environment support code and conventional |
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numerical model code. The execution environment |
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support code is held under the "eesupp" directory. |
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The grid point model code is held under the |
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"model" directory. |
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Code execution actually starts in the eesupp |
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routines and not in the model routines. For this |
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reason the top level main.F is in the eesupp/src |
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directory. End-users should not need to worry about |
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this level. The top-level routine for the numerical |
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part of the code is in model/src/the_model_main.F. |
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o References |
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Web sites - HP |
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for doc Digital |
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SGI |
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Sun |
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Linux threads |
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CRAY multitasking |
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PPT notes |
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