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Very prelim. preparations for forward dump&restart during adjoint calculation.
Use cluster local disks for purely local I/O vs. globally visible disks needed for ctrl stuff.
Small adjustments to global2x2_tot setup
o Modifications of obcs - bug fixes in cost package - bug fixes in grdchk package
Preparing next differentiable checkpoint and sync of MAIN vs. ecco-branch
Modifications, corrections and additions to obcs code.
Updating all adjoint-related makefiles
Modif's to enable tangent linear run in ECCO environment o main problem is missing call mdsreadfield out of exf_set_gen o incorrect g_active_write_... o (re-) init of bar files and g_bar files
Updating makefile to sync SRC list with cost/ ctrl/ exf/ obcs/
Modified adjoint/makefile and pkg/exf/exf_bulkformulae.F
updating
o exf totally restructured
- replaced all exf_set_ routines by one generic exf_set_gen.F
and made sure it's still differentiable
- split exf_getffields.F into new exf_bulkformulae.F
- exf_inscal_/exf_outscal_ suffixes consistent with field names
- updated adjoint/makefile and relevant verif. accordingly
Updating SOURCE list
makefile totally updated: o file list up to date with c49 o new target for tangent linear o old targets modified
o Added cost_ice for sea-ice volume sensitivity experiment.
o added verification/lab_sea as per release1_p12_pre
o adjoint-friendly modifications to pkg/seaice
- adjoint-friendly modifications
seaice adjoint test case
Modified Files: adjoint/makefile verification/natl_box_adjoint/README
Modifications to correctly handle evap field for adjoint.
o Merging pkg/exf and pkg/seaice from cvs tag ecco_ice2
Updating makefile
Updating makefile list.
Merging patches between release1_p1 and release1_p2: o fixed array boundary problem for adjoint (related to partial recomputation within subroutine related to dynamics -> calc_viscosity -> mom_... o fixed recomputation in thermodynamics o prepare (but not complete) recomputation problem in impldiff o fixed problem for adjoint of global_max o switched off sponge layer code in external_forcing Bug fix in ctrl_mask_set_yz (spotted by G. Gebbie)
o added new cost routines to diff. list. o removed comm_stats, ini_communication_patterns from diff. list (no more need to "keep" MPI headers for adjoint generation)
Enable I/O swapping of surface flux control vector for adjoint.
Small fix for SUN.
ssuming path for TAF and TAMC are known (e.g. in $path) -> $TAF and $TAMC are default.
Removed src file from list.
o Updating adjoint/makefile to ECCO code o Adding optim and lsopt for line search optimization. o Adding verif. experiments for ECCO Code will be tagged ecco-branch-mod1.
Fixed AD-related problems: o Store directives up-to-date with re-arranged Adams-Bashforth (mainly thermodynamics.F) o New store directives for multi-dim. advection schemes * new CPP flag ALLOW_MULTI_DIM_ADVECTION * new common block and key passkey (mainly gad_advection.F) o Modified store directives for split of dynamics/thermodynamics for the case ALLOW_KPP o Cleaned argument list for timestep_tracer.F
Updated to rearranged Adams-Bashforth.
Target "adrestore" added to targets "adtaf" and "adtamc".
Updating to new gad_... mom_... routines.
Updated to code in c40pre8.
o New package pkg/rw/ needed new flow directives for TAMC. o Replacement of calc_mom_rhs by mom_fluxform and mom_vecinv needed update of adjoint/makefile and additional store directives in the_main_loop.F to cover all cases.
Updates to generate tangent linear code.
Extended list of code to be differentiated: o added routines related to diffkr, kapgm o added routines related to split into dynamics/thermodynamics.
Missing routine in SRC list added.
Added a flow directive file for ecco_check_exp.
Added S/R forward_step.F
Added more routines to be differentiated.
o Updated makefile to incorporate new routines and flow directives o Added "make adtaf" for usage of TAF instead of TAMC. o Bug fix in adjoint_ecco_sed.com o Removed some adjoint prototype code
Updated reference adjoint code and TAMC protocol for test case verification/vero/.
See doc/tag-index and doc/notes_c37_adj.txt Preparation for stand-alone autodifferentiability.
Modifications and additions to enable automatic differentiation. Detailed info's in doc/notes_c37_adj.txt
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